Wall clock time and date at job start Tue Mar 31 2020 00:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32993 * 119.99775 * 2 1 4 4 C 1.47100 * 120.00453 * 2.44926 * 3 2 1 5 5 O 1.21621 * 119.99596 * 354.83317 * 4 3 2 6 6 N 1.34770 * 120.00509 * 174.83103 * 4 3 2 7 7 C 1.46502 * 120.00109 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.46865 * 180.02562 * 7 6 4 9 9 H 1.08998 * 112.84865 * 314.66262 * 8 7 6 10 10 C 1.53778 * 113.61915 * 85.86111 * 8 7 6 11 11 C 1.53950 * 87.02123 * 139.94920 * 10 8 7 12 12 H 1.09003 * 113.53553 * 89.18925 * 11 10 8 13 13 N 1.46502 * 113.74272 * 220.05813 * 11 10 8 14 14 C 1.36941 * 120.00038 * 252.59770 * 13 11 10 15 15 H 1.08005 * 119.99688 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00190 * 180.02562 * 14 13 11 17 17 N 1.31620 * 119.99675 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99853 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47289 * 59.99814 * 18 16 14 20 20 H 1.48504 * 109.46900 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46900 * 299.99654 * 18 16 14 22 22 C 1.53784 * 113.61084 * 183.47087 * 8 7 6 23 23 C 1.50698 * 120.00125 * 180.02562 * 2 1 3 24 24 C 1.53007 * 117.51723 * 345.36280 * 23 2 1 25 25 C 1.52995 * 117.50257 * 53.99044 * 23 2 1 26 26 H 1.08998 * 109.47079 * 178.20642 * 1 2 3 27 27 H 1.08998 * 109.47075 * 298.20553 * 1 2 3 28 28 H 1.08998 * 109.46992 * 58.20907 * 1 2 3 29 29 H 1.08002 * 120.00070 * 182.44182 * 3 2 1 30 30 H 0.97002 * 120.00284 * 359.97438 * 6 4 3 31 31 H 1.09007 * 109.46815 * 299.99411 * 7 6 4 32 32 H 1.08992 * 109.47572 * 60.00331 * 7 6 4 33 33 H 1.09000 * 113.61463 * 254.52970 * 10 8 7 34 34 H 1.09001 * 113.61310 * 25.42839 * 10 8 7 35 35 H 0.96995 * 120.00519 * 72.59756 * 13 11 10 36 36 H 0.96998 * 119.99252 * 180.02562 * 17 16 14 37 37 H 1.08993 * 113.61541 * 334.56122 * 22 8 7 38 38 H 1.08998 * 113.61583 * 105.38845 * 22 8 7 39 39 H 1.09000 * 115.54900 * 199.66861 * 23 2 1 40 40 H 1.08998 * 117.49959 * 214.97355 * 24 23 2 41 41 H 1.09001 * 117.49384 * 359.97438 * 24 23 2 42 42 H 1.09004 * 117.49340 * 359.97438 * 25 23 2 43 43 H 1.08999 * 117.49926 * 144.99828 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4375 2.4251 0.0544 5 8 0.2223 2.4288 0.0046 6 7 2.1111 3.5877 0.1596 7 6 1.3795 4.8558 0.2144 8 6 2.3733 6.0132 0.3316 9 1 3.1555 5.8266 1.0674 10 6 2.9074 6.5063 -1.0235 11 6 2.7889 7.9340 -0.4599 12 1 3.6858 8.2731 0.0587 13 7 2.2887 8.9115 -1.4297 14 6 3.1394 9.8411 -1.9659 15 1 4.1792 9.8534 -1.6740 16 6 2.6653 10.7676 -2.8845 17 7 1.3983 10.7522 -3.2405 18 14 3.8259 12.0352 -3.6163 19 1 4.9233 11.3429 -4.3387 20 1 3.0793 12.9012 -4.5639 21 1 4.3980 12.8689 -2.5286 22 6 1.7021 7.3887 0.4815 23 6 2.2605 -1.3051 -0.0006 24 6 1.4770 -2.5739 0.3418 25 6 1.9229 -2.3154 -1.0988 26 1 -0.3633 -1.0271 -0.0322 27 1 -0.3633 0.4857 0.9056 28 1 -0.3633 0.5414 -0.8735 29 1 3.2512 1.1523 -0.0398 30 1 3.0802 3.5848 0.1998 31 1 0.7897 4.9745 -0.6946 32 1 0.7172 4.8561 1.0800 33 1 3.9336 6.1997 -1.2261 34 1 2.2331 6.3085 -1.8567 35 1 1.3550 8.9002 -1.6922 36 1 1.0672 11.3994 -3.8827 37 1 0.6977 7.4325 0.0606 38 1 1.7554 7.7927 1.4925 39 1 3.2975 -1.2493 0.3304 40 1 1.9985 -3.3528 0.8979 41 1 0.4163 -2.4647 0.5679 42 1 1.1553 -2.0362 -1.8207 43 1 2.7377 -2.9242 -1.4904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691690417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:21 Heat of formation + Delta-G solvation = 27.267188 kcal Electronic energy + Delta-G solvation = -20591.270910 eV Core-core repulsion = 17445.242146 eV Total energy + Delta-G solvation = -3146.028764 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -39.97286 -38.68196 -38.02289 -34.71211 -33.33313 -33.25885 -30.32005 -28.49443 -26.90017 -25.07284 -24.38160 -23.54308 -22.78109 -21.04689 -20.65923 -19.13580 -18.62434 -17.11513 -16.91531 -16.60789 -15.56046 -15.31532 -15.03375 -14.65225 -14.54986 -13.75132 -13.62209 -13.41519 -13.23756 -12.92808 -12.73816 -12.28395 -11.87244 -11.85302 -11.78394 -11.55539 -11.36773 -11.28859 -11.20712 -10.85994 -10.81572 -10.50912 -10.19394 -10.12864 -9.81111 -9.63258 -9.42804 -9.26527 -8.86799 -8.79773 -6.95542 -5.77452 -3.06316 1.16350 3.19845 3.26815 3.43592 3.47887 3.49142 3.56678 4.22269 4.43965 4.53106 4.58947 4.63297 4.81171 4.97213 5.01858 5.11294 5.18721 5.26281 5.38300 5.47687 5.48491 5.54240 5.64790 5.67771 5.70723 5.84715 5.85694 5.91836 5.96929 6.10611 6.28177 6.28584 6.32255 6.35630 6.38724 6.53347 6.61879 6.85222 7.13154 7.59075 7.69054 8.29257 8.41216 9.52008 10.10608 10.44814 11.44882 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037363 B = 0.002407 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.224859 B =11629.743641 C =11810.343605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.004 4.004 3 C -0.226 4.226 4 C 0.541 3.459 5 O -0.546 6.546 6 N -0.722 5.722 7 C 0.133 3.867 8 C -0.127 4.127 9 H 0.087 0.913 10 C -0.161 4.161 11 C 0.166 3.834 12 H 0.075 0.925 13 N -0.713 5.713 14 C -0.244 4.244 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.142 4.142 23 C -0.134 4.134 24 C -0.174 4.174 25 C -0.166 4.166 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.400 0.600 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.336 -25.123 8.913 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.006 4.006 3 C -0.247 4.247 4 C 0.331 3.669 5 O -0.426 6.426 6 N -0.372 5.372 7 C 0.010 3.990 8 C -0.146 4.146 9 H 0.106 0.894 10 C -0.202 4.202 11 C 0.054 3.946 12 H 0.093 0.907 13 N -0.351 5.351 14 C -0.376 4.376 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.182 4.182 23 C -0.152 4.152 24 C -0.210 4.210 25 C -0.203 4.203 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.143 0.857 30 H 0.234 0.766 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.590 -24.912 8.796 26.467 hybrid contribution 0.988 0.736 -0.533 1.342 sum 2.578 -24.176 8.263 25.679 Atomic orbital electron populations 1.21089 0.90698 1.01095 1.04616 1.21770 0.96192 0.92311 0.90331 1.22306 1.00093 0.91908 1.10426 1.18500 0.87398 0.84309 0.76717 1.90777 1.13806 1.87623 1.50367 1.45940 1.10451 1.06164 1.74695 1.21405 0.94395 0.81283 1.01939 1.22635 0.98326 0.93714 0.99964 0.89446 1.23966 1.00068 1.00852 0.95314 1.21550 0.95081 0.87812 0.90185 0.90719 1.42407 1.10232 1.34524 1.47889 1.19261 0.92135 1.07407 1.18768 0.91160 1.24779 0.96202 0.99782 1.00218 1.69654 1.13063 1.38623 1.36690 0.86258 0.79796 0.81323 0.78738 1.21260 1.21686 1.21238 1.23439 1.00352 0.93931 1.00473 1.21288 0.99662 0.88437 1.05784 1.23102 1.01220 0.98126 0.98577 1.22989 1.03877 1.01367 0.92021 0.92820 0.89919 0.89601 0.85726 0.76650 0.91316 0.91892 0.92807 0.90392 0.78063 0.93400 0.90132 0.92025 0.86698 0.88272 0.87869 0.88274 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.06 36.01 0.29 -0.93 16 2 C 0.00 -0.04 5.83 -101.17 -0.59 -0.63 16 3 C -0.23 -2.31 9.67 -37.81 -0.37 -2.67 16 4 C 0.54 7.11 7.73 -12.67 -0.10 7.01 16 5 O -0.55 -8.87 13.09 5.26 0.07 -8.80 16 6 N -0.72 -8.59 5.55 -61.49 -0.34 -8.93 16 7 C 0.13 1.81 5.50 -4.04 -0.02 1.78 16 8 C -0.13 -1.73 3.75 -89.81 -0.34 -2.07 16 9 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 10 C -0.16 -2.69 7.45 -25.83 -0.19 -2.89 16 11 C 0.17 3.23 4.48 -67.03 -0.30 2.93 16 12 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 13 N -0.71 -17.94 5.41 -52.54 -0.28 -18.22 16 14 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 18 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 C -0.14 -2.29 7.40 -25.91 -0.19 -2.49 16 23 C -0.13 -0.96 6.01 -91.77 -0.55 -1.51 16 24 C -0.17 -1.03 9.80 -26.73 -0.26 -1.30 16 25 C -0.17 -1.03 10.10 -26.74 -0.27 -1.30 16 26 H 0.05 0.43 5.66 -51.93 -0.29 0.13 16 27 H 0.08 0.96 7.33 -51.93 -0.38 0.58 16 28 H 0.09 1.04 7.12 -51.93 -0.37 0.67 16 29 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.40 3.76 8.46 -40.82 -0.35 3.42 16 31 H 0.07 1.07 7.87 -51.92 -0.41 0.66 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.45 7.92 -51.93 -0.41 1.04 16 35 H 0.39 10.34 7.92 -40.82 -0.32 10.01 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.61 6.19 -51.93 -0.32 0.29 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -31.93 353.18 -9.71 -41.64 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.04 Total: 10.71 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -3.13 Total: -11.49 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.10 Total: -54.78 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.80 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.93 -9.71 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691690417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.909 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds