Wall clock time and date at job start Tue Mar 31 2020 00:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32993 * 119.99775 * 2 1 4 4 C 1.47100 * 120.00453 * 2.44926 * 3 2 1 5 5 O 1.21621 * 119.99596 * 354.83317 * 4 3 2 6 6 N 1.34770 * 120.00509 * 174.83103 * 4 3 2 7 7 C 1.46502 * 120.00109 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.46865 * 180.02562 * 7 6 4 9 9 H 1.08998 * 112.84865 * 314.66262 * 8 7 6 10 10 C 1.53778 * 113.61915 * 85.86111 * 8 7 6 11 11 C 1.53950 * 87.02123 * 139.94920 * 10 8 7 12 12 H 1.09003 * 113.53553 * 89.18925 * 11 10 8 13 13 N 1.46502 * 113.74272 * 220.05813 * 11 10 8 14 14 C 1.36941 * 120.00038 * 252.59770 * 13 11 10 15 15 H 1.08005 * 119.99688 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00190 * 180.02562 * 14 13 11 17 17 N 1.31620 * 119.99675 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99853 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47289 * 59.99814 * 18 16 14 20 20 H 1.48504 * 109.46900 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46900 * 299.99654 * 18 16 14 22 22 C 1.53784 * 113.61084 * 183.47087 * 8 7 6 23 23 C 1.50698 * 120.00125 * 180.02562 * 2 1 3 24 24 C 1.53007 * 117.51723 * 345.36280 * 23 2 1 25 25 C 1.52995 * 117.50257 * 53.99044 * 23 2 1 26 26 H 1.08998 * 109.47079 * 178.20642 * 1 2 3 27 27 H 1.08998 * 109.47075 * 298.20553 * 1 2 3 28 28 H 1.08998 * 109.46992 * 58.20907 * 1 2 3 29 29 H 1.08002 * 120.00070 * 182.44182 * 3 2 1 30 30 H 0.97002 * 120.00284 * 359.97438 * 6 4 3 31 31 H 1.09007 * 109.46815 * 299.99411 * 7 6 4 32 32 H 1.08992 * 109.47572 * 60.00331 * 7 6 4 33 33 H 1.09000 * 113.61463 * 254.52970 * 10 8 7 34 34 H 1.09001 * 113.61310 * 25.42839 * 10 8 7 35 35 H 0.96995 * 120.00519 * 72.59756 * 13 11 10 36 36 H 0.96998 * 119.99252 * 180.02562 * 17 16 14 37 37 H 1.08993 * 113.61541 * 334.56122 * 22 8 7 38 38 H 1.08998 * 113.61583 * 105.38845 * 22 8 7 39 39 H 1.09000 * 115.54900 * 199.66861 * 23 2 1 40 40 H 1.08998 * 117.49959 * 214.97355 * 24 23 2 41 41 H 1.09001 * 117.49384 * 359.97438 * 24 23 2 42 42 H 1.09004 * 117.49340 * 359.97438 * 25 23 2 43 43 H 1.08999 * 117.49926 * 144.99828 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4375 2.4251 0.0544 5 8 0.2223 2.4288 0.0046 6 7 2.1111 3.5877 0.1596 7 6 1.3795 4.8558 0.2144 8 6 2.3733 6.0132 0.3316 9 1 3.1555 5.8266 1.0674 10 6 2.9074 6.5063 -1.0235 11 6 2.7889 7.9340 -0.4599 12 1 3.6858 8.2731 0.0587 13 7 2.2887 8.9115 -1.4297 14 6 3.1394 9.8411 -1.9659 15 1 4.1792 9.8534 -1.6740 16 6 2.6653 10.7676 -2.8845 17 7 1.3983 10.7522 -3.2405 18 14 3.8259 12.0352 -3.6163 19 1 4.9233 11.3429 -4.3387 20 1 3.0793 12.9012 -4.5639 21 1 4.3980 12.8689 -2.5286 22 6 1.7021 7.3887 0.4815 23 6 2.2605 -1.3051 -0.0006 24 6 1.4770 -2.5739 0.3418 25 6 1.9229 -2.3154 -1.0988 26 1 -0.3633 -1.0271 -0.0322 27 1 -0.3633 0.4857 0.9056 28 1 -0.3633 0.5414 -0.8735 29 1 3.2512 1.1523 -0.0398 30 1 3.0802 3.5848 0.1998 31 1 0.7897 4.9745 -0.6946 32 1 0.7172 4.8561 1.0800 33 1 3.9336 6.1997 -1.2261 34 1 2.2331 6.3085 -1.8567 35 1 1.3550 8.9002 -1.6922 36 1 1.0672 11.3994 -3.8827 37 1 0.6977 7.4325 0.0606 38 1 1.7554 7.7927 1.4925 39 1 3.2975 -1.2493 0.3304 40 1 1.9985 -3.3528 0.8979 41 1 0.4163 -2.4647 0.5679 42 1 1.1553 -2.0362 -1.8207 43 1 2.7377 -2.9242 -1.4904 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691690417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:20 Heat of formation + Delta-G solvation = 7.364728 kcal Electronic energy + Delta-G solvation = -20592.133946 eV Core-core repulsion = 17445.242146 eV Total energy + Delta-G solvation = -3146.891799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.99849 -39.91051 -38.77463 -36.06933 -34.99603 -34.09907 -32.20896 -29.59895 -27.99277 -26.46361 -25.93386 -24.71495 -23.22331 -22.43702 -21.62986 -20.50567 -19.47686 -19.01837 -17.89833 -17.44430 -16.71008 -16.48735 -16.32652 -15.90319 -15.67674 -15.25260 -15.00500 -14.66451 -14.34254 -13.91229 -13.82449 -13.37673 -13.24250 -13.00359 -12.94518 -12.90262 -12.61314 -12.46974 -12.24197 -12.14153 -12.07658 -11.88602 -11.57112 -11.52577 -11.34574 -11.07408 -10.82107 -10.56802 -10.18466 -9.70117 -8.97988 -7.94381 -5.22988 0.35509 1.47010 1.50356 1.56417 2.28251 2.29966 2.56974 3.03413 3.37060 3.56650 3.73701 3.76080 3.87207 3.92116 3.96718 4.12303 4.15719 4.25556 4.29454 4.36095 4.43428 4.56239 4.65806 4.76847 4.79317 4.84578 4.97309 4.98633 5.00161 5.05186 5.10993 5.13877 5.22133 5.26152 5.37923 5.46873 5.52804 5.53492 5.57446 5.73665 6.27721 6.66372 7.32450 7.32975 8.11400 8.33266 9.28981 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037363 B = 0.002407 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.224859 B =11629.743641 C =11810.343605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.000 4.000 3 C -0.236 4.236 4 C 0.533 3.467 5 O -0.586 6.586 6 N -0.713 5.713 7 C 0.140 3.860 8 C -0.095 4.095 9 H 0.122 0.878 10 C -0.153 4.153 11 C 0.144 3.856 12 H 0.082 0.918 13 N -0.730 5.730 14 C -0.243 4.243 15 H 0.080 0.920 16 C -0.082 4.082 17 N -0.973 5.973 18 Si 0.975 3.025 19 H -0.277 1.277 20 H -0.298 1.298 21 H -0.276 1.276 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.168 4.168 25 C -0.164 4.164 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.154 0.846 30 H 0.415 0.585 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.371 0.629 36 H 0.250 0.750 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.724 -27.007 10.114 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.002 4.002 3 C -0.257 4.257 4 C 0.324 3.676 5 O -0.469 6.469 6 N -0.364 5.364 7 C 0.016 3.984 8 C -0.114 4.114 9 H 0.140 0.860 10 C -0.194 4.194 11 C 0.034 3.966 12 H 0.100 0.900 13 N -0.368 5.368 14 C -0.375 4.375 15 H 0.098 0.902 16 C -0.273 4.273 17 N -0.623 5.623 18 Si 0.804 3.196 19 H -0.203 1.203 20 H -0.224 1.224 21 H -0.202 1.202 22 C -0.176 4.176 23 C -0.161 4.161 24 C -0.205 4.205 25 C -0.201 4.201 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.172 0.828 30 H 0.251 0.749 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.203 0.797 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.134 0.866 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.046 -26.836 10.041 28.937 hybrid contribution 0.217 1.225 -0.854 1.509 sum 4.263 -25.611 9.187 27.540 Atomic orbital electron populations 1.21001 0.91794 1.01778 1.02706 1.22000 0.95737 0.93591 0.88879 1.22375 1.01300 0.90399 1.11586 1.19077 0.87143 0.85462 0.75902 1.90766 1.15663 1.88226 1.52245 1.45809 1.11164 1.05243 1.74164 1.21172 0.94343 0.82178 1.00724 1.22464 0.98232 0.92210 0.98465 0.86034 1.23742 1.00590 0.98892 0.96174 1.21989 0.96485 0.87781 0.90330 0.90028 1.42635 1.09406 1.35541 1.49186 1.19710 0.92794 1.07184 1.17831 0.90247 1.25633 0.97771 1.02395 1.01538 1.69827 1.14996 1.39692 1.37824 0.85185 0.77787 0.78761 0.77874 1.20340 1.22442 1.20182 1.23323 0.98689 0.95289 1.00345 1.21353 1.00299 0.87410 1.07069 1.23200 1.01129 0.97626 0.98532 1.23072 1.04173 1.00856 0.91981 0.90732 0.91605 0.91922 0.82840 0.74852 0.93901 0.91877 0.91306 0.92837 0.79705 0.94115 0.91633 0.90241 0.85099 0.86569 0.88173 0.89038 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.06 71.24 0.57 -1.82 16 2 C 0.00 0.00 5.83 -17.62 -0.10 -0.10 16 3 C -0.24 -4.42 9.67 23.43 0.23 -4.20 16 4 C 0.53 13.69 7.73 86.57 0.67 14.36 16 5 O -0.59 -19.55 13.09 -4.10 -0.05 -19.60 16 6 N -0.71 -15.85 5.55 -466.70 -2.59 -18.44 16 7 C 0.14 3.68 5.50 86.38 0.48 4.15 16 8 C -0.09 -2.37 3.75 -10.27 -0.04 -2.41 16 9 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 10 C -0.15 -4.96 7.45 31.18 0.23 -4.72 16 11 C 0.14 5.48 4.48 45.58 0.20 5.69 16 12 H 0.08 3.00 8.10 -2.39 -0.02 2.98 16 13 N -0.73 -37.27 5.41 -320.15 -1.73 -39.00 16 14 C -0.24 -13.57 9.97 84.03 0.84 -12.74 16 15 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 16 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 17 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 18 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 C -0.14 -4.27 7.40 31.12 0.23 -4.04 16 23 C -0.14 -1.70 6.01 -11.54 -0.07 -1.77 16 24 C -0.17 -1.57 9.80 30.60 0.30 -1.27 16 25 C -0.16 -1.64 10.10 30.59 0.31 -1.33 16 26 H 0.07 1.15 5.66 -2.39 -0.01 1.14 16 27 H 0.07 1.57 7.33 -2.39 -0.02 1.56 16 28 H 0.06 1.59 7.12 -2.39 -0.02 1.57 16 29 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 30 H 0.41 6.62 8.46 -92.71 -0.78 5.83 16 31 H 0.04 1.36 7.87 -2.38 -0.02 1.34 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 2.01 7.92 -2.39 -0.02 1.99 16 35 H 0.37 20.64 7.92 -92.71 -0.73 19.90 16 36 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 0.99 6.19 -2.39 -0.01 0.98 16 42 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -70.90 353.18 1.74 -69.16 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -0.51 Total: 34.33 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 4.31 Total: -14.48 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -4.04 Total: -117.88 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.05 Total: -19.60 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -70.90 1.74 -69.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691690417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.529 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds