Wall clock time and date at job start Tue Mar 31 2020 01:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46857 * 124.36135 * 3 2 1 5 5 C 1.53001 * 109.46843 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46982 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00153 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00297 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00252 * 185.12397 * 8 6 5 10 10 C 1.53007 * 109.47256 * 298.24036 * 9 8 6 11 11 C 1.52998 * 109.47084 * 58.24140 * 9 8 6 12 12 N 1.46494 * 109.47223 * 59.99956 * 11 9 8 13 13 C 1.36938 * 120.00039 * 179.97438 * 12 11 9 14 14 H 1.07996 * 119.99936 * 0.02562 * 13 12 11 15 15 C 1.38819 * 119.99762 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00137 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99756 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47171 * 60.00300 * 17 15 13 19 19 H 1.48501 * 109.47145 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47256 * 300.00344 * 17 15 13 21 21 C 1.52995 * 109.47073 * 178.24230 * 9 8 6 22 22 C 1.53000 * 117.49829 * 132.09347 * 21 9 8 23 23 C 1.52998 * 117.50270 * 63.43472 * 21 9 8 24 24 H 4.44652 * 5.63316 * 180.02562 * 4 1 2 25 25 H 1.08995 * 109.47716 * 4.36210 * 3 2 1 26 26 H 1.09000 * 109.46822 * 244.35740 * 3 2 1 27 27 H 1.09005 * 109.46892 * 59.99698 * 4 3 2 28 28 H 1.08994 * 109.47354 * 299.99828 * 4 3 2 29 29 H 1.08993 * 109.47089 * 60.00562 * 5 4 3 30 30 H 1.09000 * 109.47063 * 299.99744 * 5 4 3 31 31 H 0.96996 * 119.99515 * 5.12907 * 8 6 5 32 32 H 1.09001 * 109.46988 * 300.00216 * 10 9 8 33 33 H 1.08997 * 109.47303 * 179.97438 * 10 9 8 34 34 H 1.09004 * 109.46816 * 60.00060 * 10 9 8 35 35 H 1.08997 * 109.47250 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47258 * 300.00105 * 11 9 8 37 37 H 0.97002 * 120.00037 * 359.97438 * 12 11 9 38 38 H 0.97000 * 119.99845 * 180.02562 * 16 15 13 39 39 H 1.09001 * 115.54848 * 277.76138 * 21 9 8 40 40 H 1.08996 * 117.50453 * 0.02562 * 22 21 9 41 41 H 1.09000 * 117.49801 * 145.02120 * 22 21 9 42 42 H 1.09000 * 117.50110 * 214.98522 * 23 21 9 43 43 H 1.09007 * 117.49577 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1556 0.8151 -1.1908 5 6 4.6857 0.8163 -1.1905 6 6 5.1876 1.6190 -2.3630 7 8 4.3992 2.1385 -3.1243 8 7 6.5126 1.7596 -2.5657 9 6 7.0013 2.6306 -3.6375 10 6 6.5088 2.1041 -4.9871 11 6 6.4744 4.0505 -3.4209 12 7 6.9459 4.5546 -2.1287 13 6 6.5985 5.8135 -1.7168 14 1 5.9766 6.4346 -2.3443 15 6 7.0449 6.2909 -0.4921 16 7 7.8024 5.5337 0.2729 17 14 6.5717 8.0085 0.0695 18 1 5.0929 8.1089 0.1627 19 1 7.1704 8.2762 1.4018 20 1 7.0748 9.0055 -0.9093 21 6 8.5311 2.6467 -3.6238 22 6 9.2517 2.4399 -4.9576 23 6 9.2541 1.3281 -3.9056 24 1 -1.0501 0.0000 0.0003 25 1 3.0099 -1.0238 -0.0782 26 1 3.0091 0.4456 0.9265 27 1 2.7917 1.8396 -1.1127 28 1 2.7925 0.3703 -2.1173 29 1 5.0498 -0.2080 -1.2685 30 1 5.0484 1.2614 -0.2640 31 1 7.1425 1.2840 -2.0020 32 1 6.8842 1.0925 -5.1413 33 1 6.8721 2.7524 -5.7844 34 1 5.4189 2.0927 -4.9967 35 1 6.8376 4.6985 -4.2185 36 1 5.3844 4.0391 -3.4305 37 1 7.5042 3.9966 -1.5649 38 1 8.1140 5.8672 1.1288 39 1 8.9877 3.3275 -2.9054 40 1 8.6359 2.2928 -5.8449 41 1 10.1825 2.9843 -5.1165 42 1 10.1865 1.1414 -3.3727 43 1 8.6398 0.4489 -4.1002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698642091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:02 Heat of formation + Delta-G solvation = 42.812118 kcal Electronic energy + Delta-G solvation = -22049.386039 eV Core-core repulsion = 18904.031354 eV Total energy + Delta-G solvation = -3145.354685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.02942 -37.88687 -35.54106 -34.57674 -33.37185 -32.30646 -31.08446 -29.69617 -27.61999 -25.80226 -23.76548 -22.47198 -22.07813 -22.02969 -19.78728 -18.70804 -18.21335 -17.12523 -16.89331 -15.74656 -15.62424 -15.17601 -14.49219 -14.41988 -14.25571 -13.84425 -13.36397 -13.20658 -12.83765 -12.54782 -12.46533 -12.14168 -12.02606 -11.83515 -11.45623 -11.32836 -11.04264 -10.86158 -10.78061 -10.77148 -10.69588 -10.22242 -10.14506 -10.09095 -10.08962 -9.78200 -9.62928 -9.18207 -8.74394 -8.49008 -6.81084 -5.71306 -2.97074 2.78459 2.82988 3.12418 3.47576 3.50102 3.51843 3.53831 4.13872 4.36766 4.65172 4.82735 4.97410 5.07860 5.12937 5.16830 5.23074 5.38342 5.47016 5.53434 5.58284 5.62947 5.65008 5.74053 5.77699 5.85118 5.99655 6.02879 6.10026 6.22047 6.25896 6.29120 6.32182 6.39100 6.49985 6.63483 6.74804 6.96583 7.18904 7.60739 7.76899 8.02204 8.48684 8.73890 9.60061 10.18558 10.54827 11.51886 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009800 B = 0.006116 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.332826 B = 4577.315612 C = 6754.063994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.178 4.178 3 C -0.016 4.016 4 C -0.097 4.097 5 C -0.142 4.142 6 C 0.522 3.478 7 O -0.539 6.539 8 N -0.712 5.712 9 C 0.202 3.798 10 C -0.162 4.162 11 C 0.143 3.857 12 N -0.725 5.725 13 C -0.230 4.230 14 H 0.067 0.933 15 C -0.015 4.015 16 N -0.937 5.937 17 Si 0.904 3.096 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.287 1.287 21 C -0.149 4.149 22 C -0.174 4.174 23 C -0.183 4.183 24 H 0.215 0.785 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.396 0.604 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.022 0.978 36 H 0.045 0.955 37 H 0.382 0.618 38 H 0.253 0.747 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 -14.631 -4.946 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.178 4.178 3 C -0.052 4.052 4 C -0.135 4.135 5 C -0.182 4.182 6 C 0.309 3.691 7 O -0.416 6.416 8 N -0.363 5.363 9 C 0.116 3.884 10 C -0.221 4.221 11 C 0.015 3.985 12 N -0.370 5.370 13 C -0.361 4.361 14 H 0.085 0.915 15 C -0.211 4.211 16 N -0.587 5.587 17 Si 0.736 3.264 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.214 1.214 21 C -0.167 4.167 22 C -0.211 4.211 23 C -0.220 4.220 24 H 0.232 0.768 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.230 0.770 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.216 0.784 38 H 0.063 0.937 39 H 0.139 0.861 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.349 -14.064 -5.485 15.463 hybrid contribution 0.191 0.672 0.964 1.190 sum -3.159 -13.392 -4.522 14.483 Atomic orbital electron populations 1.24864 0.95965 1.01554 1.01390 1.23186 0.94640 0.99966 1.00019 1.18811 0.84706 1.01478 1.00223 1.21241 0.93327 1.01517 0.97375 1.21665 0.97091 1.00809 0.98599 1.20382 0.82229 0.80609 0.85915 1.90622 1.55434 1.48556 1.46974 1.45934 1.06787 1.48096 1.35458 1.19997 0.90505 0.91231 0.86638 1.22289 1.03656 1.00041 0.96077 1.21049 0.98246 0.89577 0.89593 1.42231 1.61338 1.15880 1.17537 1.19202 1.24952 0.91296 1.00677 0.91467 1.24659 1.00829 0.98286 0.97302 1.69634 1.40065 1.36531 1.12461 0.86297 0.77906 0.84604 0.77597 1.21416 1.21786 1.21384 1.22578 0.93225 1.00128 1.00793 1.23055 1.02298 1.02498 0.93280 1.22939 1.02378 0.92772 1.03925 0.76813 0.89677 0.89303 0.90510 0.91078 0.89399 0.88359 0.76989 0.93113 0.91847 0.90258 0.95988 0.93689 0.78396 0.93696 0.86050 0.88296 0.88959 0.88989 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.50 19.25 29.55 0.57 -1.94 16 2 C -0.18 -2.22 13.34 -37.12 -0.50 -2.71 16 3 C -0.02 -0.17 5.70 -29.52 -0.17 -0.34 16 4 C -0.10 -1.24 4.46 -26.73 -0.12 -1.36 16 5 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 6 C 0.52 8.54 7.23 -10.99 -0.08 8.46 16 7 O -0.54 -10.63 12.22 5.55 0.07 -10.56 16 8 N -0.71 -10.92 4.73 -47.61 -0.23 -11.14 16 9 C 0.20 3.34 0.54 -131.82 -0.07 3.27 16 10 C -0.16 -2.40 7.06 37.16 0.26 -2.14 16 11 C 0.14 3.09 4.94 -4.05 -0.02 3.07 16 12 N -0.73 -18.38 5.03 -59.91 -0.30 -18.68 16 13 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 16 N -0.94 -28.06 13.06 55.49 0.72 -27.33 16 17 Si 0.90 22.89 29.55 -169.99 -5.02 17.86 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 C -0.15 -2.26 4.86 -90.62 -0.44 -2.70 16 22 C -0.17 -2.20 9.63 -26.70 -0.26 -2.45 16 23 C -0.18 -2.17 9.72 -26.70 -0.26 -2.43 16 24 H 0.21 1.66 7.80 -54.09 -0.42 1.24 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 28 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.40 5.22 8.38 -40.82 -0.34 4.88 16 32 H 0.05 0.66 7.00 -51.93 -0.36 0.29 16 33 H 0.06 0.88 6.81 -51.93 -0.35 0.52 16 34 H 0.08 1.33 6.13 -51.93 -0.32 1.01 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 1.08 6.22 -51.93 -0.32 0.76 16 37 H 0.38 9.87 6.63 -40.82 -0.27 9.60 16 38 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.12 2.23 7.09 -51.93 -0.37 1.86 16 40 H 0.10 1.17 5.88 -51.93 -0.31 0.86 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.00 7.39 -51.93 -0.38 0.61 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -33.05 352.50 -7.73 -40.78 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -6.80 Total: 14.21 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -1.48 Total: -10.44 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.20 Total: -57.16 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.05 -7.73 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698642091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.589 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds