Wall clock time and date at job start Tue Mar 31 2020 01:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46857 * 124.36135 * 3 2 1 5 5 C 1.53001 * 109.46843 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46982 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00153 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00297 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00252 * 185.12397 * 8 6 5 10 10 C 1.53007 * 109.47256 * 298.24036 * 9 8 6 11 11 C 1.52998 * 109.47084 * 58.24140 * 9 8 6 12 12 N 1.46494 * 109.47223 * 59.99956 * 11 9 8 13 13 C 1.36938 * 120.00039 * 179.97438 * 12 11 9 14 14 H 1.07996 * 119.99936 * 0.02562 * 13 12 11 15 15 C 1.38819 * 119.99762 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00137 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99756 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47171 * 60.00300 * 17 15 13 19 19 H 1.48501 * 109.47145 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47256 * 300.00344 * 17 15 13 21 21 C 1.52995 * 109.47073 * 178.24230 * 9 8 6 22 22 C 1.53000 * 117.49829 * 132.09347 * 21 9 8 23 23 C 1.52998 * 117.50270 * 63.43472 * 21 9 8 24 24 H 4.44652 * 5.63316 * 180.02562 * 4 1 2 25 25 H 1.08995 * 109.47716 * 4.36210 * 3 2 1 26 26 H 1.09000 * 109.46822 * 244.35740 * 3 2 1 27 27 H 1.09005 * 109.46892 * 59.99698 * 4 3 2 28 28 H 1.08994 * 109.47354 * 299.99828 * 4 3 2 29 29 H 1.08993 * 109.47089 * 60.00562 * 5 4 3 30 30 H 1.09000 * 109.47063 * 299.99744 * 5 4 3 31 31 H 0.96996 * 119.99515 * 5.12907 * 8 6 5 32 32 H 1.09001 * 109.46988 * 300.00216 * 10 9 8 33 33 H 1.08997 * 109.47303 * 179.97438 * 10 9 8 34 34 H 1.09004 * 109.46816 * 60.00060 * 10 9 8 35 35 H 1.08997 * 109.47250 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47258 * 300.00105 * 11 9 8 37 37 H 0.97002 * 120.00037 * 359.97438 * 12 11 9 38 38 H 0.97000 * 119.99845 * 180.02562 * 16 15 13 39 39 H 1.09001 * 115.54848 * 277.76138 * 21 9 8 40 40 H 1.08996 * 117.50453 * 0.02562 * 22 21 9 41 41 H 1.09000 * 117.49801 * 145.02120 * 22 21 9 42 42 H 1.09000 * 117.50110 * 214.98522 * 23 21 9 43 43 H 1.09007 * 117.49577 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1556 0.8151 -1.1908 5 6 4.6857 0.8163 -1.1905 6 6 5.1876 1.6190 -2.3630 7 8 4.3992 2.1385 -3.1243 8 7 6.5126 1.7596 -2.5657 9 6 7.0013 2.6306 -3.6375 10 6 6.5088 2.1041 -4.9871 11 6 6.4744 4.0505 -3.4209 12 7 6.9459 4.5546 -2.1287 13 6 6.5985 5.8135 -1.7168 14 1 5.9766 6.4346 -2.3443 15 6 7.0449 6.2909 -0.4921 16 7 7.8024 5.5337 0.2729 17 14 6.5717 8.0085 0.0695 18 1 5.0929 8.1089 0.1627 19 1 7.1704 8.2762 1.4018 20 1 7.0748 9.0055 -0.9093 21 6 8.5311 2.6467 -3.6238 22 6 9.2517 2.4399 -4.9576 23 6 9.2541 1.3281 -3.9056 24 1 -1.0501 0.0000 0.0003 25 1 3.0099 -1.0238 -0.0782 26 1 3.0091 0.4456 0.9265 27 1 2.7917 1.8396 -1.1127 28 1 2.7925 0.3703 -2.1173 29 1 5.0498 -0.2080 -1.2685 30 1 5.0484 1.2614 -0.2640 31 1 7.1425 1.2840 -2.0020 32 1 6.8842 1.0925 -5.1413 33 1 6.8721 2.7524 -5.7844 34 1 5.4189 2.0927 -4.9967 35 1 6.8376 4.6985 -4.2185 36 1 5.3844 4.0391 -3.4305 37 1 7.5042 3.9966 -1.5649 38 1 8.1140 5.8672 1.1288 39 1 8.9877 3.3275 -2.9054 40 1 8.6359 2.2928 -5.8449 41 1 10.1825 2.9843 -5.1165 42 1 10.1865 1.1414 -3.3727 43 1 8.6398 0.4489 -4.1002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698642091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:01 Heat of formation + Delta-G solvation = 21.871206 kcal Electronic energy + Delta-G solvation = -22050.294105 eV Core-core repulsion = 18904.031354 eV Total energy + Delta-G solvation = -3146.262751 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.33427 -39.10945 -36.55935 -36.27123 -34.91366 -33.43435 -32.81003 -31.20167 -28.61410 -27.55737 -25.22862 -24.18433 -23.28929 -23.04544 -20.97752 -20.08284 -19.21368 -19.11556 -18.04861 -16.96853 -16.83432 -16.67252 -16.22889 -15.62898 -15.43967 -15.24939 -14.95799 -14.56174 -14.20988 -13.89599 -13.74068 -13.47938 -13.37827 -13.08604 -13.03690 -12.78131 -12.47509 -12.43266 -12.23214 -12.04320 -12.00111 -11.89455 -11.74491 -11.21393 -11.14113 -11.05140 -10.96534 -10.89218 -10.40762 -9.84801 -8.93989 -7.95219 -5.21055 1.43981 1.46460 1.52584 1.81970 1.88613 1.93442 2.33202 2.55252 3.07233 3.37224 3.54207 3.65623 3.84411 3.95508 3.98460 4.11031 4.19675 4.20719 4.26818 4.48438 4.52018 4.67211 4.70754 4.78005 4.81417 4.82116 4.89234 4.94382 5.01549 5.04680 5.14624 5.21782 5.23020 5.30921 5.34324 5.36093 5.45438 5.50016 5.78064 6.27556 6.72819 6.80093 7.35039 7.49255 8.09733 8.39373 9.27414 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009800 B = 0.006116 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.332826 B = 4577.315612 C = 6754.063994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.218 4.218 3 C -0.010 4.010 4 C -0.089 4.089 5 C -0.133 4.133 6 C 0.510 3.490 7 O -0.579 6.579 8 N -0.706 5.706 9 C 0.210 3.790 10 C -0.152 4.152 11 C 0.145 3.855 12 N -0.727 5.727 13 C -0.247 4.247 14 H 0.060 0.940 15 C -0.065 4.065 16 N -0.961 5.961 17 Si 0.966 3.034 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.280 1.280 21 C -0.175 4.175 22 C -0.167 4.167 23 C -0.153 4.153 24 H 0.243 0.757 25 H 0.113 0.887 26 H 0.095 0.905 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.131 0.869 30 H 0.100 0.900 31 H 0.409 0.591 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.014 0.986 36 H 0.017 0.983 37 H 0.379 0.621 38 H 0.252 0.748 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 -16.369 -5.062 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.218 4.218 3 C -0.047 4.047 4 C -0.127 4.127 5 C -0.172 4.172 6 C 0.298 3.702 7 O -0.459 6.459 8 N -0.357 5.357 9 C 0.124 3.876 10 C -0.210 4.210 11 C 0.018 3.982 12 N -0.371 5.371 13 C -0.379 4.379 14 H 0.078 0.922 15 C -0.258 4.258 16 N -0.612 5.612 17 Si 0.796 3.204 18 H -0.212 1.212 19 H -0.215 1.215 20 H -0.206 1.206 21 C -0.194 4.194 22 C -0.204 4.204 23 C -0.189 4.189 24 H 0.259 0.741 25 H 0.132 0.868 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.118 0.882 31 H 0.244 0.756 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.035 0.965 37 H 0.212 0.788 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.730 -15.820 -5.610 17.006 hybrid contribution -0.037 1.241 0.958 1.568 sum -2.767 -14.579 -4.652 15.552 Atomic orbital electron populations 1.25719 0.97034 1.00583 1.00204 1.23809 0.95791 1.00997 1.01157 1.18824 0.84063 1.02605 0.99161 1.21116 0.93754 0.99628 0.98235 1.21682 0.96496 1.02514 0.96531 1.21165 0.82179 0.80408 0.86459 1.90610 1.56415 1.50257 1.48644 1.45922 1.06897 1.47520 1.35348 1.19780 0.91518 0.88327 0.87971 1.22191 1.02142 1.01653 0.95035 1.21070 0.96513 0.93037 0.87621 1.42267 1.61112 1.14987 1.18691 1.19493 1.24789 0.92628 1.00968 0.92182 1.25377 1.01156 1.01878 0.97408 1.69763 1.40900 1.37954 1.12571 0.85328 0.77467 0.80515 0.77139 1.21223 1.21474 1.20585 1.22246 0.92009 1.02724 1.02377 1.23183 1.02046 1.02532 0.92652 1.23030 1.02100 0.91705 1.02103 0.74076 0.86849 0.88720 0.94315 0.91848 0.85054 0.88221 0.75555 0.90383 0.90976 0.92528 0.96815 0.96537 0.78804 0.93940 0.89690 0.87088 0.88448 0.87754 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.74 19.25 74.32 1.43 -3.31 16 2 C -0.22 -5.28 13.34 31.12 0.42 -4.86 16 3 C -0.01 -0.21 5.70 28.79 0.16 -0.04 16 4 C -0.09 -2.30 4.46 30.60 0.14 -2.17 16 5 C -0.13 -3.14 5.70 29.85 0.17 -2.97 16 6 C 0.51 16.70 7.23 87.66 0.63 17.34 16 7 O -0.58 -23.70 12.22 -3.05 -0.04 -23.74 16 8 N -0.71 -21.24 4.73 -422.92 -2.00 -23.24 16 9 C 0.21 6.92 0.54 3.60 0.00 6.92 16 10 C -0.15 -4.33 7.06 71.98 0.51 -3.82 16 11 C 0.15 6.50 4.94 86.38 0.43 6.93 16 12 N -0.73 -38.05 5.03 -343.46 -1.73 -39.78 16 13 C -0.25 -14.48 9.99 84.03 0.84 -13.64 16 14 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 15 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 16 N -0.96 -58.17 13.06 21.65 0.28 -57.89 16 17 Si 0.97 47.50 29.55 68.60 2.03 49.52 16 18 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 19 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 21 C -0.17 -5.15 4.86 -10.80 -0.05 -5.20 16 22 C -0.17 -3.82 9.63 30.62 0.29 -3.52 16 23 C -0.15 -3.14 9.72 30.62 0.30 -2.84 16 24 H 0.24 3.32 7.80 -4.41 -0.03 3.29 16 25 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.04 1.27 8.10 -2.38 -0.02 1.25 16 28 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 29 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16 31 H 0.41 10.16 8.38 -92.71 -0.78 9.38 16 32 H 0.08 1.79 7.00 -2.39 -0.02 1.77 16 33 H 0.07 1.90 6.81 -2.39 -0.02 1.88 16 34 H 0.06 1.90 6.13 -2.39 -0.01 1.89 16 35 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.02 0.85 6.22 -2.39 -0.01 0.83 16 37 H 0.38 20.13 6.63 -92.71 -0.61 19.51 16 38 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.08 3.18 7.09 -2.39 -0.02 3.16 16 40 H 0.11 2.28 5.88 -2.39 -0.01 2.27 16 41 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.11 1.90 7.39 -2.38 -0.02 1.89 16 Total: -1.00 -73.94 352.50 3.90 -70.05 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: -0.38 Total: 39.64 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 5.73 Total: -14.56 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -3.44 Total: -120.91 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.04 Total: -23.74 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.52 kcal Total: -73.94 3.90 -70.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698642091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.919 kcal (2) G-P(sol) polarization free energy of solvation -73.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds