Wall clock time and date at job start Tue Mar 31 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47504 * 2 1 4 4 N 1.46495 * 109.47377 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00056 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99904 * 359.97438 * 5 4 3 7 7 C 1.38813 * 120.00111 * 179.97438 * 5 4 3 8 8 N 1.31614 * 119.99934 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00059 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47335 * 90.00423 * 9 7 5 11 11 H 1.48507 * 109.47340 * 210.00545 * 9 7 5 12 12 H 1.48504 * 109.47187 * 330.00013 * 9 7 5 13 13 N 1.46502 * 109.47149 * 120.00416 * 2 1 3 14 14 C 1.34777 * 119.99994 * 304.29305 * 13 2 1 15 15 O 1.21281 * 119.99567 * 354.99373 * 14 13 2 16 16 C 1.50693 * 119.99843 * 174.98902 * 14 13 2 17 17 H 1.09000 * 115.55141 * 34.41814 * 16 14 13 18 18 C 1.53004 * 117.49907 * 248.74221 * 16 14 13 19 19 C 1.52993 * 59.99970 * 252.48861 * 18 16 14 20 20 C 1.52991 * 138.58299 * 130.88956 * 19 18 16 21 21 C 1.52991 * 138.59057 * 229.10265 * 19 18 16 22 22 C 1.53004 * 109.46938 * 240.00082 * 2 1 3 23 23 C 1.52995 * 117.50050 * 12.69322 * 22 2 1 24 24 C 1.52996 * 117.50284 * 304.06888 * 22 2 1 25 25 H 1.08998 * 109.46861 * 299.99843 * 1 2 3 26 26 H 1.08998 * 109.47136 * 59.99619 * 1 2 3 27 27 H 1.08996 * 109.46979 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47235 * 300.00320 * 3 2 1 29 29 H 1.09001 * 109.46424 * 60.00201 * 3 2 1 30 30 H 0.97004 * 120.00124 * 0.02562 * 4 3 2 31 31 H 0.97000 * 120.00213 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99794 * 124.28785 * 13 2 1 33 33 H 1.08999 * 117.49688 * 359.97438 * 18 16 14 34 34 H 1.09009 * 117.49517 * 144.99721 * 18 16 14 35 35 H 1.09005 * 117.50232 * 238.37956 * 20 19 18 36 36 H 1.09000 * 117.50172 * 23.41078 * 20 19 18 37 37 H 1.09007 * 117.49613 * 336.60034 * 21 19 18 38 38 H 1.08997 * 117.49912 * 121.59971 * 21 19 18 39 39 H 1.09002 * 115.54608 * 158.39932 * 22 2 1 40 40 H 1.09000 * 117.49922 * 0.02562 * 23 22 2 41 41 H 1.09003 * 117.49983 * 145.01830 * 23 22 2 42 42 H 1.08999 * 117.50227 * 214.97709 * 24 22 2 43 43 H 1.09002 * 117.49656 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1898 2.6283 0.0013 6 1 3.6498 3.5636 0.0009 7 6 5.5779 2.6283 0.0024 8 7 6.2360 1.4884 0.0023 9 14 6.5119 4.2460 0.0025 10 1 6.7584 4.6751 1.4026 11 1 7.8101 4.0682 -0.6965 12 1 5.7100 5.2807 -0.6985 13 7 2.0184 -0.6907 1.1961 14 6 1.6230 -0.2830 2.4184 15 8 0.9365 0.7102 2.5336 16 6 2.0338 -1.0612 3.6417 17 1 3.0226 -1.5177 3.5984 18 6 0.9396 -1.8163 4.3990 19 6 1.5510 -0.5492 5.0003 20 6 1.0818 0.7632 5.6311 21 6 2.1487 -0.0827 6.3291 22 6 2.0400 -0.7213 -1.2493 23 6 1.0273 -1.0167 -2.3574 24 6 1.5587 -2.1545 -1.4836 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 3.9901 0.6023 0.0006 31 1 7.2060 1.4884 0.0027 32 1 2.6262 -1.4415 1.1084 33 1 -0.0775 -1.7498 4.0126 34 1 1.2086 -2.7697 4.8539 35 1 1.4045 1.6917 5.1600 36 1 0.0855 0.7814 6.0729 37 1 1.8542 -0.6211 7.2300 38 1 3.1733 0.2889 6.3172 39 1 3.0588 -0.4769 -1.5502 40 1 -0.0023 -0.6968 -2.1966 41 1 1.3796 -0.9666 -3.3877 42 1 2.2607 -2.8531 -1.9390 43 1 0.8784 -2.5836 -0.7479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698649962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:11 Heat of formation + Delta-G solvation = 65.783899 kcal Electronic energy + Delta-G solvation = -22526.524076 eV Core-core repulsion = 19382.165522 eV Total energy + Delta-G solvation = -3144.358554 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.13335 -38.46863 -36.86373 -34.57838 -33.35626 -32.55797 -31.01159 -29.57674 -25.87917 -24.40045 -23.06488 -22.30292 -22.26319 -22.01307 -20.26607 -18.94478 -18.58337 -17.12518 -16.97251 -15.81060 -15.21738 -14.96341 -14.79512 -14.61358 -14.35287 -13.93825 -13.66399 -13.13964 -12.78149 -12.36294 -12.21163 -12.03630 -11.92531 -11.61183 -11.40692 -11.28981 -11.01382 -10.77915 -10.76119 -10.70905 -10.16540 -10.12420 -10.05345 -9.98287 -9.90236 -9.76456 -9.61947 -9.13835 -8.72676 -8.47012 -6.79454 -5.70042 -2.95652 2.89567 3.32194 3.47841 3.52964 3.54497 3.84069 3.88450 4.18190 4.40477 4.66020 4.83007 4.86834 4.93121 5.13253 5.22575 5.28973 5.42832 5.49664 5.52220 5.60036 5.65973 5.67998 5.71478 5.74548 5.76874 5.84850 6.00706 6.00927 6.04051 6.10156 6.26828 6.29770 6.30513 6.33190 6.49268 6.63804 6.74727 6.98367 7.20467 7.78118 8.04304 8.49832 8.75469 9.61104 10.20062 10.56007 11.53301 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.006795 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.455836 B = 4119.841799 C = 5896.134692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.203 3.797 3 C 0.144 3.856 4 N -0.725 5.725 5 C -0.228 4.228 6 H 0.068 0.932 7 C -0.017 4.017 8 N -0.937 5.937 9 Si 0.905 3.095 10 H -0.292 1.292 11 H -0.292 1.292 12 H -0.283 1.283 13 N -0.706 5.706 14 C 0.549 3.451 15 O -0.530 6.530 16 C -0.137 4.137 17 H 0.122 0.878 18 C -0.103 4.103 19 C -0.199 4.199 20 C -0.112 4.112 21 C -0.133 4.133 22 C -0.150 4.150 23 C -0.173 4.173 24 C -0.182 4.182 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.022 0.978 29 H 0.044 0.956 30 H 0.382 0.618 31 H 0.253 0.747 32 H 0.398 0.602 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 -10.485 5.154 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.118 3.882 3 C 0.016 3.984 4 N -0.369 5.369 5 C -0.360 4.360 6 H 0.086 0.914 7 C -0.212 4.212 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.208 1.208 13 N -0.356 5.356 14 C 0.335 3.665 15 O -0.407 6.407 16 C -0.158 4.158 17 H 0.139 0.861 18 C -0.141 4.141 19 C -0.199 4.199 20 C -0.149 4.149 21 C -0.170 4.170 22 C -0.168 4.168 23 C -0.211 4.211 24 C -0.219 4.219 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.215 0.785 31 H 0.062 0.938 32 H 0.231 0.769 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.144 -9.578 5.209 16.321 hybrid contribution 1.338 0.204 -0.188 1.367 sum -10.806 -9.374 5.021 15.161 Atomic orbital electron populations 1.22274 0.94856 1.01503 1.03525 1.19996 0.92968 0.93075 0.82195 1.21059 0.86421 0.91826 0.99072 1.42225 0.99217 1.06124 1.89361 1.19245 0.89020 0.86251 1.41444 0.91413 1.24668 0.96289 0.96671 1.03596 1.69644 1.06573 1.23764 1.58697 0.86212 0.79408 0.83316 0.77447 1.21914 1.21895 1.20850 1.45842 1.49381 1.35411 1.04999 1.19396 0.79641 0.84195 0.83303 1.90613 1.38859 1.25075 1.86166 1.21993 1.00370 1.03121 0.90322 0.86061 1.22618 0.97171 0.94093 1.00189 1.21089 1.07087 0.98305 0.93434 1.22570 0.98384 0.93580 1.00371 1.22750 0.99083 1.02371 0.92753 1.22572 1.00696 0.96969 0.96580 1.23043 0.99287 1.02869 0.95879 1.22927 1.03978 0.91557 1.03449 0.90214 0.91695 0.93054 0.96053 0.93777 0.78457 0.93764 0.76858 0.88384 0.88005 0.87994 0.88863 0.88658 0.88481 0.86039 0.88313 0.88943 0.88989 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 6.98 37.16 0.26 -2.19 16 2 C 0.20 3.44 0.54 -131.81 -0.07 3.37 16 3 C 0.14 3.17 5.03 -4.05 -0.02 3.14 16 4 N -0.73 -18.69 5.04 -59.91 -0.30 -18.99 16 5 C -0.23 -6.61 9.99 -15.06 -0.15 -6.76 16 6 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 7 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 8 N -0.94 -28.48 13.06 55.49 0.72 -27.76 16 9 Si 0.90 23.12 29.55 -169.99 -5.02 18.10 16 10 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.71 -11.42 4.73 -47.61 -0.22 -11.65 16 14 C 0.55 9.49 7.02 -10.99 -0.08 9.42 16 15 O -0.53 -10.76 12.48 5.56 0.07 -10.69 16 16 C -0.14 -1.95 6.19 -91.77 -0.57 -2.52 16 17 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 18 C -0.10 -1.19 10.23 -26.73 -0.27 -1.46 16 19 C -0.20 -2.71 5.05 -154.52 -0.78 -3.49 16 20 C -0.11 -1.52 10.16 -26.73 -0.27 -1.79 16 21 C -0.13 -1.57 10.53 -26.73 -0.28 -1.85 16 22 C -0.15 -2.32 4.84 -90.62 -0.44 -2.76 16 23 C -0.17 -2.22 9.63 -26.74 -0.26 -2.48 16 24 C -0.18 -2.22 9.82 -26.73 -0.26 -2.48 16 25 H 0.08 1.35 6.04 -51.93 -0.31 1.04 16 26 H 0.06 0.90 6.78 -51.93 -0.35 0.55 16 27 H 0.05 0.68 6.98 -51.93 -0.36 0.31 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 1.08 6.32 -51.93 -0.33 0.75 16 30 H 0.38 10.06 6.62 -40.82 -0.27 9.79 16 31 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.40 5.75 8.48 -40.82 -0.35 5.40 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.12 2.26 7.09 -51.93 -0.37 1.90 16 40 H 0.10 1.18 5.88 -51.93 -0.31 0.88 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.09 1.04 7.35 -51.93 -0.38 0.66 16 LS Contribution 346.80 15.07 5.23 5.23 Total: -1.00 -32.63 346.80 -9.62 -42.25 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -6.80 Total: 15.97 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -3.29 Total: -12.46 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.20 Total: -58.40 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.63 -9.62 -42.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698649962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.032 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds