Wall clock time and date at job start Tue Mar 31 2020 01:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47504 * 2 1 4 4 N 1.46495 * 109.47377 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00056 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99904 * 359.97438 * 5 4 3 7 7 C 1.38813 * 120.00111 * 179.97438 * 5 4 3 8 8 N 1.31614 * 119.99934 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00059 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47335 * 90.00423 * 9 7 5 11 11 H 1.48507 * 109.47340 * 210.00545 * 9 7 5 12 12 H 1.48504 * 109.47187 * 330.00013 * 9 7 5 13 13 N 1.46502 * 109.47149 * 120.00416 * 2 1 3 14 14 C 1.34777 * 119.99994 * 304.29305 * 13 2 1 15 15 O 1.21281 * 119.99567 * 354.99373 * 14 13 2 16 16 C 1.50693 * 119.99843 * 174.98902 * 14 13 2 17 17 H 1.09000 * 115.55141 * 34.41814 * 16 14 13 18 18 C 1.53004 * 117.49907 * 248.74221 * 16 14 13 19 19 C 1.52993 * 59.99970 * 252.48861 * 18 16 14 20 20 C 1.52991 * 138.58299 * 130.88956 * 19 18 16 21 21 C 1.52991 * 138.59057 * 229.10265 * 19 18 16 22 22 C 1.53004 * 109.46938 * 240.00082 * 2 1 3 23 23 C 1.52995 * 117.50050 * 12.69322 * 22 2 1 24 24 C 1.52996 * 117.50284 * 304.06888 * 22 2 1 25 25 H 1.08998 * 109.46861 * 299.99843 * 1 2 3 26 26 H 1.08998 * 109.47136 * 59.99619 * 1 2 3 27 27 H 1.08996 * 109.46979 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47235 * 300.00320 * 3 2 1 29 29 H 1.09001 * 109.46424 * 60.00201 * 3 2 1 30 30 H 0.97004 * 120.00124 * 0.02562 * 4 3 2 31 31 H 0.97000 * 120.00213 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99794 * 124.28785 * 13 2 1 33 33 H 1.08999 * 117.49688 * 359.97438 * 18 16 14 34 34 H 1.09009 * 117.49517 * 144.99721 * 18 16 14 35 35 H 1.09005 * 117.50232 * 238.37956 * 20 19 18 36 36 H 1.09000 * 117.50172 * 23.41078 * 20 19 18 37 37 H 1.09007 * 117.49613 * 336.60034 * 21 19 18 38 38 H 1.08997 * 117.49912 * 121.59971 * 21 19 18 39 39 H 1.09002 * 115.54608 * 158.39932 * 22 2 1 40 40 H 1.09000 * 117.49922 * 0.02562 * 23 22 2 41 41 H 1.09003 * 117.49983 * 145.01830 * 23 22 2 42 42 H 1.08999 * 117.50227 * 214.97709 * 24 22 2 43 43 H 1.09002 * 117.49656 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1898 2.6283 0.0013 6 1 3.6498 3.5636 0.0009 7 6 5.5779 2.6283 0.0024 8 7 6.2360 1.4884 0.0023 9 14 6.5119 4.2460 0.0025 10 1 6.7584 4.6751 1.4026 11 1 7.8101 4.0682 -0.6965 12 1 5.7100 5.2807 -0.6985 13 7 2.0184 -0.6907 1.1961 14 6 1.6230 -0.2830 2.4184 15 8 0.9365 0.7102 2.5336 16 6 2.0338 -1.0612 3.6417 17 1 3.0226 -1.5177 3.5984 18 6 0.9396 -1.8163 4.3990 19 6 1.5510 -0.5492 5.0003 20 6 1.0818 0.7632 5.6311 21 6 2.1487 -0.0827 6.3291 22 6 2.0400 -0.7213 -1.2493 23 6 1.0273 -1.0167 -2.3574 24 6 1.5587 -2.1545 -1.4836 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 3.9901 0.6023 0.0006 31 1 7.2060 1.4884 0.0027 32 1 2.6262 -1.4415 1.1084 33 1 -0.0775 -1.7498 4.0126 34 1 1.2086 -2.7697 4.8539 35 1 1.4045 1.6917 5.1600 36 1 0.0855 0.7814 6.0729 37 1 1.8542 -0.6211 7.2300 38 1 3.1733 0.2889 6.3172 39 1 3.0588 -0.4769 -1.5502 40 1 -0.0023 -0.6968 -2.1966 41 1 1.3796 -0.9666 -3.3877 42 1 2.2607 -2.8531 -1.9390 43 1 0.8784 -2.5836 -0.7479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698649962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:09 Heat of formation + Delta-G solvation = 45.460101 kcal Electronic energy + Delta-G solvation = -22527.405382 eV Core-core repulsion = 19382.165522 eV Total energy + Delta-G solvation = -3145.239860 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.44958 -39.62265 -38.03682 -36.36976 -34.93393 -33.69920 -32.86017 -31.11185 -27.61898 -25.81026 -24.55986 -23.90679 -23.28617 -23.11348 -21.37170 -20.25049 -19.82339 -19.24434 -18.20955 -17.07753 -16.79341 -16.33075 -16.04864 -15.84854 -15.75839 -15.37984 -15.24023 -14.84856 -14.31866 -13.80557 -13.70708 -13.40042 -13.22398 -13.08202 -12.82858 -12.64468 -12.44255 -12.35302 -12.22857 -12.04491 -12.01198 -11.76396 -11.26320 -11.14027 -11.07708 -11.00492 -10.90812 -10.89710 -10.38325 -9.88333 -8.96447 -7.97478 -5.23548 1.41789 1.43649 1.52059 1.63523 2.13196 2.52909 2.78321 2.83938 3.08560 3.35017 3.37703 3.62415 3.83437 3.86836 3.93375 3.95648 4.16212 4.21012 4.24898 4.45909 4.49944 4.61063 4.70378 4.74211 4.77499 4.79138 4.83221 4.86519 4.90546 4.98723 5.00717 5.02588 5.07535 5.12222 5.27179 5.29710 5.32946 5.42814 5.46846 5.74487 6.25215 6.75056 7.32247 7.43931 8.07430 8.36064 9.25531 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.006795 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.455836 B = 4119.841799 C = 5896.134692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.212 3.788 3 C 0.146 3.854 4 N -0.728 5.728 5 C -0.245 4.245 6 H 0.062 0.938 7 C -0.069 4.069 8 N -0.963 5.963 9 Si 0.969 3.031 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.539 3.461 15 O -0.568 6.568 16 C -0.158 4.158 17 H 0.130 0.870 18 C -0.068 4.068 19 C -0.226 4.226 20 C -0.130 4.130 21 C -0.111 4.111 22 C -0.177 4.177 23 C -0.164 4.164 24 C -0.152 4.152 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.377 0.623 31 H 0.251 0.749 32 H 0.406 0.594 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.501 -12.415 5.455 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.126 3.874 3 C 0.018 3.982 4 N -0.371 5.371 5 C -0.377 4.377 6 H 0.080 0.920 7 C -0.262 4.262 8 N -0.614 5.614 9 Si 0.798 3.202 10 H -0.218 1.218 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.351 5.351 14 C 0.327 3.673 15 O -0.448 6.448 16 C -0.179 4.179 17 H 0.148 0.852 18 C -0.105 4.105 19 C -0.226 4.226 20 C -0.167 4.167 21 C -0.148 4.148 22 C -0.196 4.196 23 C -0.201 4.201 24 C -0.189 4.189 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.210 0.790 31 H 0.060 0.940 32 H 0.241 0.759 33 H 0.117 0.883 34 H 0.154 0.846 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.995 -11.526 5.500 18.220 hybrid contribution 1.584 0.853 -0.301 1.824 sum -11.411 -10.673 5.199 16.467 Atomic orbital electron populations 1.22176 0.92947 1.02998 1.02943 1.19801 0.94145 0.90080 0.83362 1.21091 0.84331 0.95603 0.97135 1.42275 1.00710 1.05018 1.89062 1.19545 0.89739 0.87155 1.41276 0.92048 1.25431 0.97009 1.00004 1.03755 1.69780 1.06569 1.25537 1.59502 0.85213 0.78028 0.79671 0.77307 1.21772 1.21477 1.19888 1.45859 1.49241 1.35303 1.04722 1.20033 0.78975 0.83945 0.84363 1.90599 1.40671 1.26734 1.86776 1.22024 1.01997 1.04555 0.89325 0.85195 1.22737 0.96072 0.94303 0.97370 1.21414 1.08179 0.99305 0.93747 1.22527 0.99967 0.92553 1.01609 1.22820 0.98061 1.00910 0.93001 1.22249 0.99718 1.00397 0.97244 1.23176 0.99021 1.02413 0.95497 1.23013 1.03309 0.89874 1.02736 0.92447 0.90632 0.90367 0.96656 0.96723 0.78985 0.93972 0.75865 0.88307 0.84581 0.91409 0.87240 0.85531 0.89225 0.89700 0.86995 0.88320 0.87757 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 6.98 71.98 0.50 -3.93 16 2 C 0.21 7.22 0.54 3.61 0.00 7.22 16 3 C 0.15 6.69 5.03 86.38 0.43 7.12 16 4 N -0.73 -39.01 5.04 -343.46 -1.73 -40.74 16 5 C -0.25 -14.64 9.99 84.03 0.84 -13.80 16 6 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 7 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 8 N -0.96 -59.52 13.06 21.65 0.28 -59.24 16 9 Si 0.97 48.18 29.55 68.60 2.03 50.21 16 10 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 11 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 12 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 13 N -0.70 -22.78 4.73 -422.92 -2.00 -24.78 16 14 C 0.54 18.95 7.02 87.65 0.62 19.57 16 15 O -0.57 -24.03 12.48 -3.03 -0.04 -24.07 16 16 C -0.16 -4.39 6.19 -11.54 -0.07 -4.47 16 17 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 18 C -0.07 -1.38 10.23 30.59 0.31 -1.07 16 19 C -0.23 -5.94 5.05 -52.19 -0.26 -6.21 16 20 C -0.13 -3.54 10.16 30.59 0.31 -3.23 16 21 C -0.11 -2.48 10.53 30.59 0.32 -2.16 16 22 C -0.18 -5.40 4.84 -10.80 -0.05 -5.46 16 23 C -0.16 -3.83 9.63 30.59 0.29 -3.54 16 24 C -0.15 -3.29 9.82 30.59 0.30 -2.99 16 25 H 0.06 1.96 6.04 -2.39 -0.01 1.95 16 26 H 0.07 2.01 6.78 -2.39 -0.02 1.99 16 27 H 0.08 1.85 6.98 -2.39 -0.02 1.83 16 28 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.01 0.77 6.32 -2.39 -0.02 0.75 16 30 H 0.38 20.67 6.62 -92.71 -0.61 20.06 16 31 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.41 11.61 8.48 -92.71 -0.79 10.83 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.14 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.08 3.26 7.09 -2.39 -0.02 3.24 16 40 H 0.11 2.34 5.88 -2.39 -0.01 2.32 16 41 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.11 2.02 7.35 -2.39 -0.02 2.00 16 Total: -1.00 -73.06 346.80 2.18 -70.88 By element: Atomic # 1 Polarization: 44.72 SS G_CDS: -0.38 Total: 44.35 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 4.01 Total: -16.60 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -3.45 Total: -124.76 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.04 Total: -24.07 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -73.06 2.18 -70.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698649962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.340 kcal (2) G-P(sol) polarization free energy of solvation -73.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds