Wall clock time and date at job start Tue Mar 31 2020 01:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 N 1.46502 * 109.47508 * 300.00344 * 3 2 1 5 5 C 1.36933 * 120.00094 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99911 * 0.02562 * 5 4 3 7 7 C 1.38808 * 119.99770 * 180.02562 * 5 4 3 8 8 N 1.31618 * 120.00188 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99900 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47102 * 89.99607 * 9 7 5 11 11 H 1.48494 * 109.47022 * 209.99516 * 9 7 5 12 12 H 1.48503 * 109.47187 * 329.99840 * 9 7 5 13 13 N 1.46504 * 109.46983 * 240.00484 * 2 1 3 14 14 C 1.34772 * 119.99974 * 175.38914 * 13 2 1 15 15 O 1.21282 * 120.00294 * 355.82422 * 14 13 2 16 16 C 1.50706 * 120.00164 * 175.83065 * 14 13 2 17 17 H 1.09002 * 115.55619 * 325.69756 * 16 14 13 18 18 C 1.53005 * 117.50243 * 111.38683 * 16 14 13 19 19 C 1.52997 * 60.02787 * 107.50352 * 18 16 14 20 20 C 1.52997 * 138.58799 * 229.09423 * 19 18 16 21 21 C 1.52993 * 138.58764 * 130.88746 * 19 18 16 22 22 C 1.52995 * 109.47713 * 120.00392 * 2 1 3 23 23 C 1.53003 * 117.49965 * 121.75891 * 22 2 1 24 24 C 1.53006 * 60.00123 * 252.51086 * 23 22 2 25 25 H 1.09000 * 109.47022 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47099 * 299.99588 * 1 2 3 27 27 H 1.09001 * 109.47870 * 59.99581 * 1 2 3 28 28 H 1.09002 * 109.46832 * 60.00249 * 3 2 1 29 29 H 1.09004 * 109.47353 * 180.02562 * 3 2 1 30 30 H 0.97003 * 119.99300 * 359.97438 * 4 3 2 31 31 H 0.97008 * 119.99979 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99738 * 355.38865 * 13 2 1 33 33 H 1.08999 * 117.49370 * 0.02562 * 18 16 14 34 34 H 1.08997 * 117.49913 * 215.00576 * 18 16 14 35 35 H 1.09000 * 117.49800 * 336.60083 * 20 19 18 36 36 H 1.08997 * 117.49971 * 121.61310 * 20 19 18 37 37 H 1.09001 * 117.49400 * 238.37667 * 21 19 18 38 38 H 1.09003 * 117.49920 * 23.36999 * 21 19 18 39 39 H 1.09001 * 115.55149 * 267.47163 * 22 2 1 40 40 H 1.09000 * 117.49864 * 0.02562 * 23 22 2 41 41 H 1.09006 * 117.49698 * 145.02698 * 23 22 2 42 42 H 1.08996 * 117.50080 * 252.50840 * 24 23 22 43 43 H 1.08998 * 117.49415 * 107.48750 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8819 3.4444 -1.4125 6 1 2.5029 3.9692 -0.7015 7 6 1.4188 4.0989 -2.5455 8 7 0.6624 3.4592 -3.4122 9 14 1.8700 5.8874 -2.8411 10 1 3.1324 5.9571 -3.6200 11 1 0.7820 6.5533 -3.6012 12 1 2.0545 6.5734 -1.5370 13 7 2.0183 -0.6905 -1.1963 14 6 3.3397 -0.7330 -1.4576 15 8 4.1184 -0.1361 -0.7446 16 6 3.8499 -1.5222 -2.6358 17 1 3.2973 -2.4330 -2.8665 18 6 4.4405 -0.7378 -3.8092 19 6 5.3610 -1.5314 -2.8798 20 6 6.6528 -1.3183 -2.0882 21 6 6.4999 -2.5473 -2.9865 22 6 2.0401 -0.7213 1.2491 23 6 2.9491 -1.9346 1.0426 24 6 1.5080 -2.1304 1.5180 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4426 -0.0005 30 1 0.9942 1.6617 -1.8348 31 1 0.3390 3.9165 -4.2042 32 1 1.3904 -1.1172 -1.8002 33 1 4.4604 0.3491 -3.7287 34 1 4.2762 -1.1323 -4.8119 35 1 7.3250 -0.5292 -2.4251 36 1 6.6141 -1.4747 -1.0102 37 1 6.3606 -3.5124 -2.4994 38 1 7.0714 -2.5672 -3.9145 39 1 2.2377 -0.0849 2.1117 40 1 3.1840 -2.2186 0.0168 41 1 3.7452 -2.0965 1.7694 42 1 1.3561 -2.4212 2.5574 43 1 0.7947 -2.5436 0.8049 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698649963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:16 Heat of formation + Delta-G solvation = 73.301545 kcal Electronic energy + Delta-G solvation = -22856.729543 eV Core-core repulsion = 19712.696979 eV Total energy + Delta-G solvation = -3144.032565 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.32325 -38.26049 -36.42980 -34.87738 -33.25789 -32.46913 -31.14787 -29.46260 -26.00168 -24.18449 -23.48159 -22.30869 -22.06248 -21.29643 -20.50121 -18.90999 -18.85721 -17.22921 -16.74051 -15.89197 -15.37826 -14.92107 -14.75402 -14.39949 -14.23927 -13.84052 -13.49365 -13.22101 -12.82129 -12.23389 -12.08232 -12.02207 -11.85940 -11.55910 -11.41754 -11.20676 -11.03605 -10.81681 -10.74621 -10.69193 -10.18243 -10.06607 -9.99108 -9.93648 -9.85400 -9.74748 -9.59776 -9.11597 -8.63902 -8.45896 -6.75238 -5.68064 -2.93165 2.98256 3.37545 3.48847 3.54000 3.55546 3.89368 3.98299 4.10495 4.44182 4.66089 4.90075 4.93792 4.96762 5.14696 5.18189 5.27563 5.49684 5.56575 5.61492 5.65005 5.68619 5.72092 5.74095 5.76538 5.80700 5.90106 6.02201 6.04048 6.09910 6.20942 6.23625 6.26924 6.31593 6.37023 6.43510 6.68390 6.70601 7.03617 7.28997 7.80115 8.05359 8.52005 8.82317 9.63188 10.22724 10.58586 11.55328 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013369 B = 0.006687 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.947092 B = 4186.350617 C = 5617.803147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.201 3.799 3 C 0.139 3.861 4 N -0.725 5.725 5 C -0.225 4.225 6 H 0.067 0.933 7 C -0.018 4.018 8 N -0.937 5.937 9 Si 0.904 3.096 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.283 1.283 13 N -0.714 5.714 14 C 0.550 3.450 15 O -0.517 6.517 16 C -0.142 4.142 17 H 0.116 0.884 18 C -0.097 4.097 19 C -0.199 4.199 20 C -0.112 4.112 21 C -0.134 4.134 22 C -0.143 4.143 23 C -0.162 4.162 24 C -0.184 4.184 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.018 0.982 29 H 0.057 0.943 30 H 0.381 0.619 31 H 0.252 0.748 32 H 0.394 0.606 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.462 -15.683 3.658 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.115 3.885 3 C 0.011 3.989 4 N -0.369 5.369 5 C -0.357 4.357 6 H 0.085 0.915 7 C -0.213 4.213 8 N -0.587 5.587 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 N -0.366 5.366 14 C 0.337 3.663 15 O -0.393 6.393 16 C -0.163 4.163 17 H 0.134 0.866 18 C -0.134 4.134 19 C -0.200 4.200 20 C -0.149 4.149 21 C -0.171 4.171 22 C -0.162 4.162 23 C -0.200 4.200 24 C -0.221 4.221 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.215 0.785 31 H 0.062 0.938 32 H 0.228 0.772 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.091 -15.072 4.232 16.462 hybrid contribution -0.428 0.668 -0.756 1.095 sum 4.664 -14.404 3.477 15.535 Atomic orbital electron populations 1.21981 0.93310 1.01216 1.03979 1.20030 0.93544 0.92647 0.82284 1.21178 0.99282 0.87725 0.90721 1.42229 1.61167 1.10365 1.23124 1.19233 1.24621 0.87642 1.04171 0.91478 1.24652 1.00963 0.98077 0.97568 1.69650 1.39975 1.35953 1.13166 0.86223 0.77336 0.85289 0.77614 1.21947 1.21932 1.20893 1.45920 1.07026 1.57288 1.26331 1.19263 0.82338 0.80308 0.84411 1.90650 1.55964 1.43304 1.49345 1.22029 0.94423 1.01636 0.98189 0.86612 1.22673 0.98031 0.99403 0.93289 1.21126 0.87339 1.05753 1.05767 1.22533 0.95835 0.98520 0.97963 1.22729 0.98639 0.94040 1.01717 1.22567 1.03939 0.90153 0.99572 1.22910 0.92713 1.02305 1.02044 1.22958 0.97520 1.00192 1.01429 0.92984 0.91144 0.90762 0.96453 0.92524 0.78477 0.93808 0.77214 0.87406 0.88002 0.88735 0.88348 0.88918 0.88668 0.87508 0.88940 0.89667 0.89425 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.17 37.16 0.30 -1.93 16 2 C 0.20 3.36 0.55 -131.82 -0.07 3.28 16 3 C 0.14 3.02 4.83 -4.04 -0.02 3.00 16 4 N -0.72 -18.60 5.17 -59.91 -0.31 -18.91 16 5 C -0.23 -6.51 9.99 -15.06 -0.15 -6.66 16 6 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 7 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 8 N -0.94 -28.43 13.06 55.49 0.72 -27.70 16 9 Si 0.90 23.11 29.55 -169.99 -5.02 18.09 16 10 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 11 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 13 N -0.71 -11.29 4.20 -47.61 -0.20 -11.49 16 14 C 0.55 9.45 4.62 -10.98 -0.05 9.40 16 15 O -0.52 -10.57 12.53 5.56 0.07 -10.50 16 16 C -0.14 -2.03 6.19 -91.73 -0.57 -2.60 16 17 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 18 C -0.10 -1.42 10.23 -26.73 -0.27 -1.69 16 19 C -0.20 -2.77 5.06 -154.48 -0.78 -3.56 16 20 C -0.11 -1.48 10.17 -26.74 -0.27 -1.75 16 21 C -0.13 -1.47 10.53 -26.74 -0.28 -1.75 16 22 C -0.14 -2.12 4.86 -90.62 -0.44 -2.56 16 23 C -0.16 -2.27 8.53 -26.73 -0.23 -2.50 16 24 C -0.18 -2.23 9.68 -26.72 -0.26 -2.48 16 25 H 0.05 0.64 6.89 -51.93 -0.36 0.29 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.30 6.86 -51.93 -0.36 0.94 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 1.38 5.72 -51.93 -0.30 1.09 16 30 H 0.38 10.02 6.35 -40.82 -0.26 9.76 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.39 5.38 8.48 -40.82 -0.35 5.04 16 33 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.11 1.62 8.06 -51.93 -0.42 1.20 16 40 H 0.09 1.36 5.17 -51.93 -0.27 1.09 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.03 7.17 -51.93 -0.37 0.66 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -32.55 345.17 -9.60 -42.15 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -6.87 Total: 15.57 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.19 Total: -12.42 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.21 Total: -58.10 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.55 -9.60 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698649963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.456 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds