Wall clock time and date at job start Tue Mar 31 2020 01:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 N 1.46502 * 109.47508 * 300.00344 * 3 2 1 5 5 C 1.36933 * 120.00094 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99911 * 0.02562 * 5 4 3 7 7 C 1.38808 * 119.99770 * 180.02562 * 5 4 3 8 8 N 1.31618 * 120.00188 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99900 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47102 * 89.99607 * 9 7 5 11 11 H 1.48494 * 109.47022 * 209.99516 * 9 7 5 12 12 H 1.48503 * 109.47187 * 329.99840 * 9 7 5 13 13 N 1.46504 * 109.46983 * 240.00484 * 2 1 3 14 14 C 1.34772 * 119.99974 * 175.38914 * 13 2 1 15 15 O 1.21282 * 120.00294 * 355.82422 * 14 13 2 16 16 C 1.50706 * 120.00164 * 175.83065 * 14 13 2 17 17 H 1.09002 * 115.55619 * 325.69756 * 16 14 13 18 18 C 1.53005 * 117.50243 * 111.38683 * 16 14 13 19 19 C 1.52997 * 60.02787 * 107.50352 * 18 16 14 20 20 C 1.52997 * 138.58799 * 229.09423 * 19 18 16 21 21 C 1.52993 * 138.58764 * 130.88746 * 19 18 16 22 22 C 1.52995 * 109.47713 * 120.00392 * 2 1 3 23 23 C 1.53003 * 117.49965 * 121.75891 * 22 2 1 24 24 C 1.53006 * 60.00123 * 252.51086 * 23 22 2 25 25 H 1.09000 * 109.47022 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47099 * 299.99588 * 1 2 3 27 27 H 1.09001 * 109.47870 * 59.99581 * 1 2 3 28 28 H 1.09002 * 109.46832 * 60.00249 * 3 2 1 29 29 H 1.09004 * 109.47353 * 180.02562 * 3 2 1 30 30 H 0.97003 * 119.99300 * 359.97438 * 4 3 2 31 31 H 0.97008 * 119.99979 * 180.02562 * 8 7 5 32 32 H 0.97005 * 119.99738 * 355.38865 * 13 2 1 33 33 H 1.08999 * 117.49370 * 0.02562 * 18 16 14 34 34 H 1.08997 * 117.49913 * 215.00576 * 18 16 14 35 35 H 1.09000 * 117.49800 * 336.60083 * 20 19 18 36 36 H 1.08997 * 117.49971 * 121.61310 * 20 19 18 37 37 H 1.09001 * 117.49400 * 238.37667 * 21 19 18 38 38 H 1.09003 * 117.49920 * 23.36999 * 21 19 18 39 39 H 1.09001 * 115.55149 * 267.47163 * 22 2 1 40 40 H 1.09000 * 117.49864 * 0.02562 * 23 22 2 41 41 H 1.09006 * 117.49698 * 145.02698 * 23 22 2 42 42 H 1.08996 * 117.50080 * 252.50840 * 24 23 22 43 43 H 1.08998 * 117.49415 * 107.48750 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8819 3.4444 -1.4125 6 1 2.5029 3.9692 -0.7015 7 6 1.4188 4.0989 -2.5455 8 7 0.6624 3.4592 -3.4122 9 14 1.8700 5.8874 -2.8411 10 1 3.1324 5.9571 -3.6200 11 1 0.7820 6.5533 -3.6012 12 1 2.0545 6.5734 -1.5370 13 7 2.0183 -0.6905 -1.1963 14 6 3.3397 -0.7330 -1.4576 15 8 4.1184 -0.1361 -0.7446 16 6 3.8499 -1.5222 -2.6358 17 1 3.2973 -2.4330 -2.8665 18 6 4.4405 -0.7378 -3.8092 19 6 5.3610 -1.5314 -2.8798 20 6 6.6528 -1.3183 -2.0882 21 6 6.4999 -2.5473 -2.9865 22 6 2.0401 -0.7213 1.2491 23 6 2.9491 -1.9346 1.0426 24 6 1.5080 -2.1304 1.5180 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4426 -0.0005 30 1 0.9942 1.6617 -1.8348 31 1 0.3390 3.9165 -4.2042 32 1 1.3904 -1.1172 -1.8002 33 1 4.4604 0.3491 -3.7287 34 1 4.2762 -1.1323 -4.8119 35 1 7.3250 -0.5292 -2.4251 36 1 6.6141 -1.4747 -1.0102 37 1 6.3606 -3.5124 -2.4994 38 1 7.0714 -2.5672 -3.9145 39 1 2.2377 -0.0849 2.1117 40 1 3.1840 -2.2186 0.0168 41 1 3.7452 -2.0965 1.7694 42 1 1.3561 -2.4212 2.5574 43 1 0.7947 -2.5436 0.8049 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698649963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:14 Heat of formation + Delta-G solvation = 53.082458 kcal Electronic energy + Delta-G solvation = -22857.606309 eV Core-core repulsion = 19712.696979 eV Total energy + Delta-G solvation = -3144.909330 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.63772 -39.41122 -37.67357 -36.58090 -34.87235 -33.70096 -32.87285 -31.12058 -27.66914 -25.77776 -25.03821 -23.26077 -23.10288 -22.91191 -21.71394 -20.28604 -20.00199 -19.25228 -18.02678 -17.19008 -16.91950 -16.35517 -15.89644 -15.73855 -15.68249 -15.33273 -14.96079 -14.94253 -14.55533 -13.63027 -13.51840 -13.38309 -13.28707 -13.00107 -12.82870 -12.64200 -12.37981 -12.33458 -12.26703 -12.12479 -11.99656 -11.77673 -11.23290 -11.12151 -11.08679 -10.97722 -10.91148 -10.87756 -10.28619 -9.85427 -8.90393 -7.95057 -5.20238 1.42691 1.44387 1.52719 1.69048 2.16506 2.54205 2.80869 2.88788 3.00456 3.37464 3.38426 3.66431 3.84691 3.87972 4.01054 4.02240 4.14266 4.19164 4.37540 4.38941 4.51948 4.57447 4.65988 4.75848 4.77924 4.79953 4.80493 4.90810 4.92469 4.96986 5.02973 5.04845 5.08815 5.21974 5.28661 5.30391 5.33770 5.37483 5.46493 5.80217 6.28070 6.77646 7.35021 7.51676 8.10853 8.39619 9.27962 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013369 B = 0.006687 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.947092 B = 4186.350617 C = 5617.803147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.209 3.791 3 C 0.140 3.860 4 N -0.727 5.727 5 C -0.241 4.241 6 H 0.059 0.941 7 C -0.069 4.069 8 N -0.963 5.963 9 Si 0.966 3.034 10 H -0.291 1.291 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.707 5.707 14 C 0.543 3.457 15 O -0.558 6.558 16 C -0.141 4.141 17 H 0.151 0.849 18 C -0.105 4.105 19 C -0.218 4.218 20 C -0.134 4.134 21 C -0.095 4.095 22 C -0.165 4.165 23 C -0.169 4.169 24 C -0.148 4.148 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.011 0.989 29 H 0.028 0.972 30 H 0.377 0.623 31 H 0.251 0.749 32 H 0.407 0.593 33 H 0.064 0.936 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 -17.891 3.506 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.123 3.877 3 C 0.012 3.988 4 N -0.370 5.370 5 C -0.373 4.373 6 H 0.077 0.923 7 C -0.261 4.261 8 N -0.614 5.614 9 Si 0.796 3.204 10 H -0.219 1.219 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.359 5.359 14 C 0.331 3.669 15 O -0.436 6.436 16 C -0.161 4.161 17 H 0.169 0.831 18 C -0.142 4.142 19 C -0.218 4.218 20 C -0.170 4.170 21 C -0.131 4.131 22 C -0.185 4.185 23 C -0.206 4.206 24 C -0.185 4.185 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.046 0.954 30 H 0.210 0.790 31 H 0.060 0.940 32 H 0.242 0.758 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.716 -17.302 4.093 18.395 hybrid contribution -0.257 1.389 -0.656 1.557 sum 4.459 -15.914 3.437 16.880 Atomic orbital electron populations 1.21912 0.91804 1.03190 1.02729 1.19825 0.94464 0.89673 0.83741 1.21203 0.97552 0.91137 0.88864 1.42273 1.60967 1.09629 1.24130 1.19506 1.24425 0.89177 1.04238 0.92276 1.25382 1.01280 1.02016 0.97433 1.69778 1.40822 1.37336 1.13417 0.85248 0.76870 0.80701 0.77618 1.21880 1.21484 1.20016 1.45880 1.07036 1.56688 1.26295 1.19846 0.82361 0.79946 0.84785 1.90633 1.56958 1.45053 1.50956 1.22099 0.95333 1.02205 0.96501 0.83137 1.22587 0.99533 0.97138 0.94950 1.21351 0.87513 1.07509 1.05443 1.22570 0.96035 1.00647 0.97793 1.22869 0.95333 0.93429 1.01518 1.22428 1.06344 0.91317 0.98373 1.22896 0.94069 1.01758 1.01864 1.23056 0.96034 0.96414 1.02973 0.89308 0.91024 0.93337 0.97100 0.95395 0.78952 0.94012 0.75769 0.91692 0.85210 0.89112 0.89569 0.86910 0.86545 0.88409 0.89597 0.89690 0.87340 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 8.17 71.98 0.59 -3.46 16 2 C 0.21 6.97 0.55 3.60 0.00 6.97 16 3 C 0.14 6.34 4.83 86.38 0.42 6.75 16 4 N -0.73 -38.59 5.17 -343.44 -1.78 -40.36 16 5 C -0.24 -14.37 9.99 84.03 0.84 -13.53 16 6 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 7 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 8 N -0.96 -59.18 13.06 21.65 0.28 -58.90 16 9 Si 0.97 48.16 29.55 68.60 2.03 50.19 16 10 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 11 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 13 N -0.71 -22.08 4.20 -422.93 -1.78 -23.85 16 14 C 0.54 18.81 4.62 87.66 0.41 19.22 16 15 O -0.56 -23.76 12.53 -3.03 -0.04 -23.79 16 16 C -0.14 -3.89 6.19 -11.51 -0.07 -3.96 16 17 H 0.15 3.04 8.14 -2.39 -0.02 3.02 16 18 C -0.10 -3.06 10.23 30.59 0.31 -2.75 16 19 C -0.22 -5.86 5.06 -52.16 -0.26 -6.12 16 20 C -0.13 -3.53 10.17 30.59 0.31 -3.22 16 21 C -0.10 -1.82 10.53 30.59 0.32 -1.50 16 22 C -0.16 -4.77 4.86 -10.79 -0.05 -4.83 16 23 C -0.17 -4.48 8.53 30.60 0.26 -4.22 16 24 C -0.15 -3.11 9.68 30.60 0.30 -2.81 16 25 H 0.09 1.92 6.89 -2.39 -0.02 1.91 16 26 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 1.67 6.86 -2.39 -0.02 1.66 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.03 1.45 5.72 -2.39 -0.01 1.44 16 30 H 0.38 20.41 6.35 -92.71 -0.59 19.82 16 31 H 0.25 14.93 8.31 -92.70 -0.77 14.15 16 32 H 0.41 10.57 8.48 -92.70 -0.79 9.78 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.10 2.98 8.06 -2.39 -0.02 2.96 16 40 H 0.09 2.41 5.17 -2.39 -0.01 2.40 16 41 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.11 1.93 7.17 -2.39 -0.02 1.91 16 Total: -1.00 -72.76 345.17 2.20 -70.56 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: -0.36 Total: 43.21 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 3.84 Total: -17.06 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -3.27 Total: -123.11 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.04 Total: -23.79 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -72.76 2.20 -70.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698649963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.647 kcal (2) G-P(sol) polarization free energy of solvation -72.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds