Wall clock time and date at job start Tue Mar 31 2020 01:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47013 * 2 1 4 4 N 1.46506 * 109.47393 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00537 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99801 * 359.72876 * 5 4 3 7 7 C 1.38810 * 119.99964 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00368 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99595 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47561 * 89.99794 * 9 7 5 11 11 H 1.48502 * 109.47022 * 209.99817 * 9 7 5 12 12 H 1.48498 * 109.47579 * 329.99639 * 9 7 5 13 13 N 1.46498 * 109.47151 * 120.00130 * 2 1 3 14 14 C 1.34777 * 119.99979 * 298.23934 * 13 2 1 15 15 O 1.21276 * 119.99971 * 5.12265 * 14 13 2 16 16 C 1.50699 * 119.99912 * 185.12251 * 14 13 2 17 17 H 1.08998 * 115.55579 * 325.67061 * 16 14 13 18 18 C 1.53004 * 117.49813 * 111.38086 * 16 14 13 19 19 C 1.52991 * 60.00012 * 107.48701 * 18 16 14 20 20 C 1.52997 * 138.58526 * 130.88981 * 19 18 16 21 21 C 1.52994 * 138.58999 * 229.10624 * 19 18 16 22 22 C 1.53001 * 109.47578 * 240.00221 * 2 1 3 23 23 C 1.53003 * 117.49506 * 12.02480 * 22 2 1 24 24 C 1.53003 * 60.00225 * 252.51139 * 23 22 2 25 25 H 1.09000 * 109.46784 * 59.99913 * 1 2 3 26 26 H 1.09004 * 109.47021 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47075 * 299.99745 * 1 2 3 28 28 H 1.09001 * 109.46918 * 60.00423 * 3 2 1 29 29 H 1.08993 * 109.47639 * 300.00027 * 3 2 1 30 30 H 0.97007 * 119.99852 * 0.02562 * 4 3 2 31 31 H 0.97003 * 120.00151 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00290 * 118.23815 * 13 2 1 33 33 H 1.08999 * 117.49920 * 214.97661 * 18 16 14 34 34 H 1.08997 * 117.50066 * 359.97438 * 18 16 14 35 35 H 1.09005 * 117.49661 * 238.37905 * 20 19 18 36 36 H 1.08998 * 117.50125 * 23.40776 * 20 19 18 37 37 H 1.09000 * 117.49682 * 336.59337 * 21 19 18 38 38 H 1.08997 * 117.49660 * 121.59332 * 21 19 18 39 39 H 1.08997 * 115.55348 * 157.73120 * 22 2 1 40 40 H 1.08994 * 117.50040 * 0.02562 * 23 22 2 41 41 H 1.09000 * 117.49564 * 145.02269 * 23 22 2 42 42 H 1.08995 * 117.50030 * 252.51079 * 24 23 22 43 43 H 1.09001 * 117.49612 * 107.48454 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1897 2.6285 0.0013 6 1 3.6497 3.5638 -0.0031 7 6 5.5778 2.6284 0.0013 8 7 6.2359 1.4886 0.0012 9 14 6.5117 4.2462 0.0029 10 1 6.7592 4.6736 1.4034 11 1 7.8093 4.0693 -0.6972 12 1 5.7093 5.2818 -0.6962 13 7 2.0183 -0.6906 1.1961 14 6 1.7222 -0.2098 2.4199 15 8 0.9758 0.7391 2.5344 16 6 2.3187 -0.8515 3.6461 17 1 2.4629 -1.9304 3.5893 18 6 3.3475 -0.0416 4.4377 19 6 1.9440 -0.2596 5.0063 20 6 1.2939 -0.7128 6.3150 21 6 0.8160 0.5672 5.6264 22 6 2.0401 -0.7212 -1.2492 23 6 1.0241 -1.0305 -2.3506 24 6 1.5711 -2.1600 -1.4753 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.9901 0.6025 0.0006 31 1 7.2059 1.4886 0.0017 32 1 2.5547 -1.4939 1.1074 33 1 4.1689 -0.5877 4.9017 34 1 3.5932 0.9551 4.0714 35 1 0.6359 -1.5810 6.2759 36 1 1.8761 -0.6047 7.2301 37 1 1.0839 1.5174 6.0885 38 1 -0.1561 0.5415 5.1340 39 1 3.0548 -0.4684 -1.5567 40 1 -0.0075 -0.7199 -2.1855 41 1 1.3704 -0.9812 -3.3830 42 1 2.2772 -2.8536 -1.9318 43 1 0.8992 -2.5926 -0.7340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698649965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:23 Heat of formation + Delta-G solvation = 65.693023 kcal Electronic energy + Delta-G solvation = -22616.761897 eV Core-core repulsion = 19472.399402 eV Total energy + Delta-G solvation = -3144.362495 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.10731 -38.43041 -36.84051 -34.57135 -33.34715 -32.49684 -31.00852 -29.56515 -25.86885 -24.35957 -23.02262 -22.31072 -22.27409 -22.01892 -20.14574 -18.91892 -18.57152 -17.11491 -16.95551 -15.77680 -15.21088 -14.90270 -14.79347 -14.48095 -14.37948 -14.06484 -13.54588 -13.13894 -12.68814 -12.29228 -12.19598 -12.04679 -11.90160 -11.56832 -11.39565 -11.29166 -11.01879 -10.78973 -10.76006 -10.71575 -10.15004 -10.06101 -10.01740 -9.94060 -9.83478 -9.75585 -9.62270 -9.11511 -8.73343 -8.46723 -6.79883 -5.70294 -2.96061 2.96659 3.31426 3.47248 3.52651 3.54104 3.87205 3.98242 4.20890 4.47249 4.65513 4.83824 4.95563 4.98955 5.13442 5.22779 5.27906 5.41426 5.52170 5.58631 5.64518 5.65691 5.72627 5.74491 5.78018 5.84694 5.96176 6.00518 6.02821 6.10583 6.24107 6.26209 6.28711 6.30650 6.33866 6.50392 6.64203 6.75583 6.97327 7.19982 7.77808 8.05388 8.49354 8.77454 9.60843 10.19609 10.55972 11.52822 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011042 B = 0.007155 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.120657 B = 3912.347228 C = 5722.158263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.203 3.797 3 C 0.144 3.856 4 N -0.725 5.725 5 C -0.229 4.229 6 H 0.067 0.933 7 C -0.016 4.016 8 N -0.936 5.936 9 Si 0.903 3.097 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.551 3.449 15 O -0.532 6.532 16 C -0.138 4.138 17 H 0.117 0.883 18 C -0.093 4.093 19 C -0.202 4.202 20 C -0.134 4.134 21 C -0.113 4.113 22 C -0.149 4.149 23 C -0.174 4.174 24 C -0.183 4.183 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.023 0.977 30 H 0.382 0.618 31 H 0.253 0.747 32 H 0.396 0.604 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.606 -9.761 5.153 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.118 3.882 3 C 0.015 3.985 4 N -0.369 5.369 5 C -0.360 4.360 6 H 0.085 0.915 7 C -0.211 4.211 8 N -0.585 5.585 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 N -0.358 5.358 14 C 0.337 3.663 15 O -0.409 6.409 16 C -0.159 4.159 17 H 0.134 0.866 18 C -0.130 4.130 19 C -0.202 4.202 20 C -0.171 4.171 21 C -0.149 4.149 22 C -0.168 4.168 23 C -0.211 4.211 24 C -0.220 4.220 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.216 0.784 31 H 0.062 0.938 32 H 0.230 0.770 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.140 0.860 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.107 -8.871 5.209 15.139 hybrid contribution 1.231 0.117 -0.230 1.258 sum -9.876 -8.754 4.979 14.105 Atomic orbital electron populations 1.22289 0.94955 1.01441 1.03393 1.19993 0.92913 0.93123 0.82190 1.21050 0.86476 0.91766 0.99170 1.42235 0.99155 1.06155 1.89364 1.19234 0.89007 0.86233 1.41531 0.91456 1.24654 0.96269 0.96603 1.03579 1.69646 1.06568 1.23717 1.58615 0.86232 0.79432 0.83379 0.77452 1.21906 1.21912 1.20882 1.45844 1.54994 1.30058 1.04911 1.19405 0.80408 0.83079 0.83381 1.90602 1.36190 1.27631 1.86442 1.21951 1.04901 0.99375 0.89720 0.86551 1.22660 0.89959 1.01642 0.98744 1.21149 0.98399 1.07374 0.93301 1.22725 1.02012 0.98885 0.93492 1.22528 0.97173 0.94674 1.00569 1.22583 1.00743 0.96786 0.96651 1.23046 0.99213 1.02909 0.95921 1.22932 1.04001 0.91627 1.03470 0.91814 0.93121 0.90270 0.93723 0.95976 0.78371 0.93763 0.76993 0.87935 0.87406 0.88931 0.88655 0.88749 0.88430 0.86008 0.88298 0.88939 0.88965 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 7.06 37.16 0.26 -2.19 16 2 C 0.20 3.44 0.54 -131.82 -0.07 3.37 16 3 C 0.14 3.12 4.94 -4.04 -0.02 3.10 16 4 N -0.72 -18.44 5.03 -59.91 -0.30 -18.74 16 5 C -0.23 -6.54 9.99 -15.06 -0.15 -6.69 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 7 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 8 N -0.94 -28.09 13.06 55.49 0.72 -27.37 16 9 Si 0.90 22.90 29.55 -169.99 -5.02 17.88 16 10 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 13 N -0.71 -11.45 4.73 -47.61 -0.23 -11.68 16 14 C 0.55 9.66 7.02 -10.99 -0.08 9.59 16 15 O -0.53 -10.84 12.48 5.56 0.07 -10.77 16 16 C -0.14 -2.05 6.19 -91.77 -0.57 -2.62 16 17 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 18 C -0.09 -1.41 10.23 -26.73 -0.27 -1.68 16 19 C -0.20 -2.86 5.05 -154.52 -0.78 -3.64 16 20 C -0.13 -1.49 10.53 -26.73 -0.28 -1.78 16 21 C -0.11 -1.50 10.16 -26.73 -0.27 -1.77 16 22 C -0.15 -2.31 4.87 -90.61 -0.44 -2.75 16 23 C -0.17 -2.23 9.62 -26.73 -0.26 -2.49 16 24 C -0.18 -2.24 9.71 -26.73 -0.26 -2.50 16 25 H 0.06 0.89 6.81 -51.93 -0.35 0.54 16 26 H 0.05 0.68 7.00 -51.93 -0.36 0.31 16 27 H 0.08 1.36 6.13 -51.93 -0.32 1.04 16 28 H 0.04 1.08 6.22 -51.93 -0.32 0.76 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.38 9.98 6.63 -40.82 -0.27 9.71 16 31 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.40 5.65 8.38 -40.82 -0.34 5.31 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.12 2.27 7.09 -51.93 -0.37 1.90 16 40 H 0.10 1.19 5.87 -51.93 -0.31 0.88 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.09 1.04 7.39 -51.93 -0.38 0.65 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -31.94 346.68 -9.62 -41.55 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -6.80 Total: 16.50 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -3.29 Total: -12.61 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.20 Total: -57.78 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.94 -9.62 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698649965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.248 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds