Wall clock time and date at job start Tue Mar 31 2020 01:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47013 * 2 1 4 4 N 1.46506 * 109.47393 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00537 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99801 * 359.72876 * 5 4 3 7 7 C 1.38810 * 119.99964 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00368 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99595 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47561 * 89.99794 * 9 7 5 11 11 H 1.48502 * 109.47022 * 209.99817 * 9 7 5 12 12 H 1.48498 * 109.47579 * 329.99639 * 9 7 5 13 13 N 1.46498 * 109.47151 * 120.00130 * 2 1 3 14 14 C 1.34777 * 119.99979 * 298.23934 * 13 2 1 15 15 O 1.21276 * 119.99971 * 5.12265 * 14 13 2 16 16 C 1.50699 * 119.99912 * 185.12251 * 14 13 2 17 17 H 1.08998 * 115.55579 * 325.67061 * 16 14 13 18 18 C 1.53004 * 117.49813 * 111.38086 * 16 14 13 19 19 C 1.52991 * 60.00012 * 107.48701 * 18 16 14 20 20 C 1.52997 * 138.58526 * 130.88981 * 19 18 16 21 21 C 1.52994 * 138.58999 * 229.10624 * 19 18 16 22 22 C 1.53001 * 109.47578 * 240.00221 * 2 1 3 23 23 C 1.53003 * 117.49506 * 12.02480 * 22 2 1 24 24 C 1.53003 * 60.00225 * 252.51139 * 23 22 2 25 25 H 1.09000 * 109.46784 * 59.99913 * 1 2 3 26 26 H 1.09004 * 109.47021 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47075 * 299.99745 * 1 2 3 28 28 H 1.09001 * 109.46918 * 60.00423 * 3 2 1 29 29 H 1.08993 * 109.47639 * 300.00027 * 3 2 1 30 30 H 0.97007 * 119.99852 * 0.02562 * 4 3 2 31 31 H 0.97003 * 120.00151 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00290 * 118.23815 * 13 2 1 33 33 H 1.08999 * 117.49920 * 214.97661 * 18 16 14 34 34 H 1.08997 * 117.50066 * 359.97438 * 18 16 14 35 35 H 1.09005 * 117.49661 * 238.37905 * 20 19 18 36 36 H 1.08998 * 117.50125 * 23.40776 * 20 19 18 37 37 H 1.09000 * 117.49682 * 336.59337 * 21 19 18 38 38 H 1.08997 * 117.49660 * 121.59332 * 21 19 18 39 39 H 1.08997 * 115.55348 * 157.73120 * 22 2 1 40 40 H 1.08994 * 117.50040 * 0.02562 * 23 22 2 41 41 H 1.09000 * 117.49564 * 145.02269 * 23 22 2 42 42 H 1.08995 * 117.50030 * 252.51079 * 24 23 22 43 43 H 1.09001 * 117.49612 * 107.48454 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1897 2.6285 0.0013 6 1 3.6497 3.5638 -0.0031 7 6 5.5778 2.6284 0.0013 8 7 6.2359 1.4886 0.0012 9 14 6.5117 4.2462 0.0029 10 1 6.7592 4.6736 1.4034 11 1 7.8093 4.0693 -0.6972 12 1 5.7093 5.2818 -0.6962 13 7 2.0183 -0.6906 1.1961 14 6 1.7222 -0.2098 2.4199 15 8 0.9758 0.7391 2.5344 16 6 2.3187 -0.8515 3.6461 17 1 2.4629 -1.9304 3.5893 18 6 3.3475 -0.0416 4.4377 19 6 1.9440 -0.2596 5.0063 20 6 1.2939 -0.7128 6.3150 21 6 0.8160 0.5672 5.6264 22 6 2.0401 -0.7212 -1.2492 23 6 1.0241 -1.0305 -2.3506 24 6 1.5711 -2.1600 -1.4753 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.9901 0.6025 0.0006 31 1 7.2059 1.4886 0.0017 32 1 2.5547 -1.4939 1.1074 33 1 4.1689 -0.5877 4.9017 34 1 3.5932 0.9551 4.0714 35 1 0.6359 -1.5810 6.2759 36 1 1.8761 -0.6047 7.2301 37 1 1.0839 1.5174 6.0885 38 1 -0.1561 0.5415 5.1340 39 1 3.0548 -0.4684 -1.5567 40 1 -0.0075 -0.7199 -2.1855 41 1 1.3704 -0.9812 -3.3830 42 1 2.2772 -2.8536 -1.9318 43 1 0.8992 -2.5926 -0.7340 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698649965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:22 Heat of formation + Delta-G solvation = 46.039323 kcal Electronic energy + Delta-G solvation = -22617.614146 eV Core-core repulsion = 19472.399402 eV Total energy + Delta-G solvation = -3145.214743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45200 -39.62394 -38.04207 -36.35411 -34.93083 -33.68810 -32.86059 -31.10738 -27.60486 -25.83017 -24.55281 -23.93193 -23.25974 -23.11952 -21.36164 -20.26097 -19.81986 -19.21463 -18.22332 -17.05785 -16.81267 -16.29050 -16.00870 -15.84126 -15.74183 -15.51802 -15.08769 -14.96416 -14.21424 -13.82313 -13.68344 -13.48611 -13.21478 -13.06797 -12.82296 -12.64967 -12.42088 -12.33755 -12.23084 -12.05325 -12.00648 -11.76282 -11.24331 -11.10952 -11.07686 -11.06429 -10.89519 -10.88242 -10.38649 -9.88432 -8.94593 -7.95485 -5.21505 1.42945 1.44336 1.52722 1.62819 2.09660 2.53980 2.80137 2.85434 3.09682 3.36744 3.38352 3.62991 3.80805 3.88477 3.93966 3.97076 4.13683 4.17596 4.24859 4.46551 4.50500 4.62288 4.69853 4.75930 4.78368 4.79244 4.80867 4.86700 4.91155 4.97888 5.02371 5.02947 5.04458 5.12504 5.28613 5.30066 5.32453 5.44050 5.47990 5.73629 6.26846 6.75096 7.34276 7.43512 8.08869 8.38215 9.27284 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011042 B = 0.007155 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.120657 B = 3912.347228 C = 5722.158263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.212 3.788 3 C 0.146 3.854 4 N -0.726 5.726 5 C -0.245 4.245 6 H 0.060 0.940 7 C -0.066 4.066 8 N -0.961 5.961 9 Si 0.966 3.034 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.701 5.701 14 C 0.540 3.460 15 O -0.567 6.567 16 C -0.139 4.139 17 H 0.150 0.850 18 C -0.104 4.104 19 C -0.219 4.219 20 C -0.096 4.096 21 C -0.132 4.132 22 C -0.176 4.176 23 C -0.164 4.164 24 C -0.154 4.154 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.378 0.622 31 H 0.251 0.749 32 H 0.407 0.593 33 H 0.127 0.873 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.323 -11.678 5.493 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.126 3.874 3 C 0.018 3.982 4 N -0.369 5.369 5 C -0.377 4.377 6 H 0.078 0.922 7 C -0.259 4.259 8 N -0.611 5.611 9 Si 0.795 3.205 10 H -0.217 1.217 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.352 5.352 14 C 0.328 3.672 15 O -0.447 6.447 16 C -0.160 4.160 17 H 0.168 0.832 18 C -0.141 4.141 19 C -0.220 4.220 20 C -0.132 4.132 21 C -0.169 4.169 22 C -0.195 4.195 23 C -0.201 4.201 24 C -0.191 4.191 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.211 0.789 31 H 0.060 0.940 32 H 0.242 0.758 33 H 0.145 0.855 34 H 0.083 0.917 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.838 -10.804 5.539 16.958 hybrid contribution 1.423 0.771 -0.349 1.656 sum -10.415 -10.033 5.191 15.365 Atomic orbital electron populations 1.22192 0.93122 1.02904 1.02814 1.19796 0.94033 0.90229 0.83320 1.21067 0.84458 0.95432 0.97250 1.42263 1.00576 1.05040 1.89057 1.19513 0.89704 0.87101 1.41359 0.92169 1.25382 0.96956 0.99817 1.03739 1.69777 1.06547 1.25422 1.59403 0.85254 0.78058 0.79841 0.77308 1.21744 1.21548 1.20038 1.45836 1.54698 1.30136 1.04495 1.20011 0.79993 0.82746 0.84494 1.90585 1.37858 1.29189 1.87047 1.22032 1.04470 1.00747 0.88756 0.83228 1.22551 0.91578 0.99973 0.99993 1.21365 0.97404 1.08702 0.94481 1.22880 1.00354 0.97741 0.92227 1.22594 0.96537 0.96093 1.01649 1.22257 0.99825 1.00164 0.97274 1.23177 0.98943 1.02410 0.95583 1.23022 1.03351 0.89919 1.02804 0.90715 0.90488 0.92545 0.96620 0.96613 0.78892 0.93980 0.75763 0.85526 0.91682 0.86855 0.86554 0.88926 0.89405 0.89614 0.87016 0.88284 0.87706 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 7.06 71.98 0.51 -3.94 16 2 C 0.21 7.20 0.54 3.60 0.00 7.20 16 3 C 0.15 6.61 4.94 86.38 0.43 7.04 16 4 N -0.73 -38.44 5.03 -343.45 -1.73 -40.17 16 5 C -0.24 -14.46 9.99 84.03 0.84 -13.62 16 6 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 7 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 8 N -0.96 -58.68 13.06 21.65 0.28 -58.40 16 9 Si 0.97 47.77 29.55 68.60 2.03 49.80 16 10 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 11 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 13 N -0.70 -22.64 4.73 -422.94 -2.00 -24.63 16 14 C 0.54 19.22 7.02 87.66 0.62 19.84 16 15 O -0.57 -24.07 12.48 -3.02 -0.04 -24.10 16 16 C -0.14 -4.03 6.19 -11.54 -0.07 -4.10 16 17 H 0.15 3.24 8.14 -2.39 -0.02 3.22 16 18 C -0.10 -3.18 10.23 30.59 0.31 -2.87 16 19 C -0.22 -6.03 5.05 -52.19 -0.26 -6.30 16 20 C -0.10 -1.86 10.53 30.60 0.32 -1.54 16 21 C -0.13 -3.46 10.16 30.59 0.31 -3.15 16 22 C -0.18 -5.35 4.87 -10.79 -0.05 -5.40 16 23 C -0.16 -3.82 9.62 30.60 0.29 -3.53 16 24 C -0.15 -3.31 9.71 30.60 0.30 -3.02 16 25 H 0.07 1.99 6.81 -2.39 -0.02 1.98 16 26 H 0.08 1.84 7.00 -2.39 -0.02 1.83 16 27 H 0.06 1.94 6.13 -2.39 -0.01 1.93 16 28 H 0.02 0.81 6.22 -2.39 -0.01 0.80 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.38 20.48 6.63 -92.70 -0.61 19.87 16 31 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.41 11.25 8.38 -92.71 -0.78 10.47 16 33 H 0.13 3.16 8.14 -2.39 -0.02 3.15 16 34 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.09 3.27 7.09 -2.39 -0.02 3.26 16 40 H 0.11 2.33 5.87 -2.39 -0.01 2.32 16 41 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 42 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.11 2.01 7.39 -2.39 -0.02 1.99 16 Total: -1.00 -71.61 346.68 2.18 -69.43 By element: Atomic # 1 Polarization: 45.27 SS G_CDS: -0.37 Total: 44.90 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 4.01 Total: -16.83 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -3.44 Total: -123.20 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.04 Total: -24.10 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -71.61 2.18 -69.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698649965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.468 kcal (2) G-P(sol) polarization free energy of solvation -71.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds