Wall clock time and date at job start Tue Mar 31 2020 00:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46578 * 2 1 4 4 C 1.50694 * 120.00443 * 275.00004 * 3 2 1 5 5 C 1.33000 * 119.99747 * 95.00165 * 3 2 1 6 6 C 1.47105 * 120.00084 * 185.57596 * 5 3 2 7 7 O 1.21615 * 119.99637 * 355.17012 * 6 5 3 8 8 N 1.34768 * 120.00288 * 175.16378 * 6 5 3 9 9 C 1.46497 * 120.00147 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47276 * 180.02562 * 9 8 6 11 11 C 1.53004 * 117.44492 * 244.24135 * 10 9 8 12 12 H 1.09004 * 119.53259 * 4.11636 * 11 10 9 13 13 C 1.54790 * 117.94157 * 160.74940 * 11 10 9 14 14 N 1.48143 * 104.41461 * 87.46660 * 13 11 10 15 15 C 1.36945 * 127.84065 * 140.36421 * 14 13 11 16 16 H 1.07992 * 120.00225 * 195.01284 * 15 14 13 17 17 C 1.38818 * 119.99345 * 15.01602 * 15 14 13 18 18 N 1.31614 * 119.99909 * 12.75919 * 17 15 14 19 19 Si 1.86796 * 119.99684 * 192.75350 * 17 15 14 20 20 H 1.48502 * 109.47031 * 84.98976 * 19 17 15 21 21 H 1.48498 * 109.47308 * 324.99028 * 19 17 15 22 22 H 1.48500 * 109.47055 * 204.99003 * 19 17 15 23 23 C 1.48146 * 104.32646 * 320.10947 * 14 13 11 24 24 C 1.53000 * 117.44461 * 175.00388 * 10 9 8 25 25 H 1.08993 * 119.53746 * 354.27763 * 24 10 9 26 26 H 1.08997 * 109.47591 * 59.99796 * 1 2 3 27 27 H 1.09004 * 109.46986 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47458 * 299.99301 * 1 2 3 29 29 H 1.08996 * 109.46947 * 240.00618 * 2 1 3 30 30 H 1.08997 * 109.46957 * 119.99792 * 2 1 3 31 31 H 1.08996 * 109.47378 * 238.76777 * 4 3 2 32 32 H 1.09005 * 109.46943 * 358.76478 * 4 3 2 33 33 H 1.09000 * 109.47606 * 118.76174 * 4 3 2 34 34 H 1.07995 * 120.00144 * 5.58196 * 5 3 2 35 35 H 0.97005 * 119.99886 * 0.02562 * 8 6 5 36 36 H 1.09003 * 109.47365 * 60.00688 * 9 8 6 37 37 H 1.08997 * 109.47042 * 300.00221 * 9 8 6 38 38 H 1.09006 * 115.51658 * 29.58505 * 10 9 8 39 39 H 1.08998 * 110.54417 * 328.72998 * 13 11 10 40 40 H 1.09001 * 110.46480 * 206.16671 * 13 11 10 41 41 H 0.97009 * 119.99730 * 180.02562 * 18 17 15 42 42 H 1.09005 * 110.41239 * 158.62815 * 23 14 13 43 43 H 1.09001 * 110.40729 * 281.06208 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.1761 2.1693 -1.3000 5 6 2.3485 2.0143 1.1475 6 6 2.7210 3.4374 1.1613 7 8 2.8252 4.0488 0.1152 8 7 2.9466 4.0635 2.3332 9 6 3.3170 5.4809 2.3470 10 6 3.5148 5.9423 3.7923 11 6 2.5555 7.0057 4.3306 12 1 1.7305 7.3503 3.7070 13 6 2.4296 7.1585 5.8658 14 7 3.5040 8.1108 6.2310 15 6 3.4513 9.1248 7.1499 16 1 4.2107 9.8926 7.1511 17 6 2.4216 9.1656 8.0800 18 7 1.6453 8.1162 8.2488 19 14 2.1378 10.7098 9.0920 20 1 1.2902 11.6565 8.3235 21 1 3.4431 11.3491 9.3963 22 1 1.4544 10.3515 10.3608 23 6 4.6505 7.7135 5.3811 24 6 4.0211 7.3689 4.0140 25 1 4.3128 7.9749 3.1564 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2118 2.4853 -1.4246 32 1 1.8929 1.5184 -2.1272 33 1 1.5277 3.0454 -1.2887 34 1 2.3320 1.4515 2.0690 35 1 2.8637 3.5757 3.1676 36 1 2.5244 6.0681 1.8831 37 1 4.2445 5.6194 1.7916 38 1 3.8546 5.1748 4.4879 39 1 2.5874 6.1999 6.3599 40 1 1.4539 7.5669 6.1294 41 1 0.9255 8.1449 8.8985 42 1 5.3525 8.5410 5.2785 43 1 5.1499 6.8401 5.8006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700582956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:05 Heat of formation + Delta-G solvation = 23.829578 kcal Electronic energy + Delta-G solvation = -20916.901633 eV Core-core repulsion = 17770.723803 eV Total energy + Delta-G solvation = -3146.177830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.89148 -38.76334 -36.48735 -34.84495 -33.30957 -31.26481 -30.81056 -28.47414 -27.16060 -26.80424 -24.98155 -24.01276 -21.24044 -20.97012 -20.00570 -19.27637 -18.65460 -17.00007 -16.80062 -15.96238 -15.28386 -14.88956 -14.76080 -14.63534 -14.19683 -13.97182 -13.52002 -13.35092 -12.99263 -12.77727 -12.67892 -12.64482 -12.34625 -11.88328 -11.81487 -11.65904 -11.28129 -11.22982 -11.10358 -10.82995 -10.67112 -10.28974 -10.13382 -9.73726 -9.68238 -9.46939 -9.28913 -9.09210 -8.81114 -8.62867 -6.88361 -5.81632 -3.13898 1.24296 3.21292 3.31590 3.38279 3.43634 3.45005 4.17086 4.44355 4.46096 4.55546 4.89620 4.91531 4.96016 5.06270 5.25528 5.33419 5.37168 5.39587 5.43620 5.53230 5.56392 5.59337 5.70401 5.78454 5.84472 5.91091 5.93916 5.95544 5.96899 6.21394 6.31951 6.34901 6.45511 6.57522 6.67378 6.72494 6.91783 7.33773 7.50162 7.59618 7.70363 8.18961 8.28600 9.09717 9.73139 10.50408 11.33243 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035434 B = 0.002720 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.001378 B =10291.252429 C =10786.152608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.033 4.033 4 C -0.115 4.115 5 C -0.230 4.230 6 C 0.542 3.458 7 O -0.548 6.548 8 N -0.721 5.721 9 C 0.156 3.844 10 C -0.152 4.152 11 C -0.165 4.165 12 H 0.102 0.898 13 C 0.185 3.815 14 N -0.594 5.594 15 C -0.228 4.228 16 H 0.077 0.923 17 C -0.006 4.006 18 N -0.914 5.914 19 Si 0.912 3.088 20 H -0.287 1.287 21 H -0.280 1.280 22 H -0.291 1.291 23 C 0.153 3.847 24 C -0.165 4.165 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.402 0.598 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.024 0.976 40 H 0.086 0.914 41 H 0.254 0.746 42 H 0.051 0.949 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -15.409 -15.305 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.035 4.035 4 C -0.171 4.171 5 C -0.251 4.251 6 C 0.332 3.668 7 O -0.428 6.428 8 N -0.372 5.372 9 C 0.033 3.967 10 C -0.171 4.171 11 C -0.185 4.185 12 H 0.120 0.880 13 C 0.059 3.941 14 N -0.318 5.318 15 C -0.356 4.356 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.560 5.560 19 Si 0.742 3.258 20 H -0.214 1.214 21 H -0.206 1.206 22 H -0.217 1.217 23 C 0.027 3.973 24 C -0.186 4.186 25 H 0.122 0.878 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.042 0.958 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.019 -14.820 -15.781 21.649 hybrid contribution -0.217 0.519 1.075 1.213 sum -0.198 -14.302 -14.705 20.514 Atomic orbital electron populations 1.21716 0.94045 1.02054 1.02610 1.20765 0.96672 0.92677 1.03231 1.22553 0.90248 0.95244 0.95444 1.21017 1.03869 0.99474 0.92737 1.22408 1.09175 0.94464 0.99066 1.18548 0.77176 0.87595 0.83519 1.90766 1.52323 1.68190 1.31553 1.45932 1.70521 1.11992 1.08728 1.20820 1.00253 0.80464 0.95180 1.22540 1.05811 0.93299 0.95411 1.24424 0.92625 1.00924 1.00560 0.88025 1.21099 0.95202 0.92556 0.85227 1.45229 1.07120 1.35494 1.43932 1.18996 1.10216 0.99746 1.06660 0.90544 1.24878 0.99765 0.97687 0.97980 1.69930 1.21416 1.27433 1.37248 0.86143 0.77982 0.82451 0.79223 1.21441 1.20585 1.21677 1.21158 0.91030 0.97147 0.87979 1.23801 0.99334 0.95375 1.00059 0.87772 0.92322 0.92066 0.92218 0.90577 0.90732 0.90070 0.93139 0.89831 0.85698 0.76347 0.91518 0.91419 0.87996 0.95811 0.89614 0.93570 0.93066 0.95842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.10 -0.64 6.03 -27.88 -0.17 -0.80 16 3 C -0.03 -0.31 5.36 -101.17 -0.54 -0.85 16 4 C -0.11 -1.15 8.34 36.00 0.30 -0.85 16 5 C -0.23 -2.34 9.63 -37.80 -0.36 -2.70 16 6 C 0.54 7.13 7.73 -12.67 -0.10 7.03 16 7 O -0.55 -8.77 13.10 5.26 0.07 -8.70 16 8 N -0.72 -8.91 5.55 -61.49 -0.34 -9.25 16 9 C 0.16 2.17 5.95 -4.04 -0.02 2.15 16 10 C -0.15 -2.35 5.39 -90.62 -0.49 -2.83 16 11 C -0.17 -3.12 6.76 -89.01 -0.60 -3.73 16 12 H 0.10 1.85 8.12 -51.93 -0.42 1.43 16 13 C 0.18 4.41 5.71 -2.20 -0.01 4.40 16 14 N -0.59 -15.27 3.37 -168.60 -0.57 -15.84 16 15 C -0.23 -6.38 10.34 -15.05 -0.16 -6.53 16 16 H 0.08 2.07 7.86 -52.49 -0.41 1.65 16 17 C -0.01 -0.17 5.35 -17.43 -0.09 -0.26 16 18 N -0.91 -26.76 11.00 55.49 0.61 -26.15 16 19 Si 0.91 21.96 29.57 -169.99 -5.03 16.93 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.15 3.22 7.03 -2.41 -0.02 3.20 16 24 C -0.17 -2.94 6.85 -89.22 -0.61 -3.55 16 25 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.07 0.43 7.99 -51.93 -0.41 0.02 16 31 H 0.08 0.92 7.36 -51.93 -0.38 0.54 16 32 H 0.05 0.39 7.99 -51.93 -0.42 -0.02 16 33 H 0.08 0.99 7.10 -51.93 -0.37 0.62 16 34 H 0.13 0.99 8.00 -52.49 -0.42 0.57 16 35 H 0.40 4.15 8.39 -40.82 -0.34 3.81 16 36 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.56 8.04 -51.93 -0.42 1.15 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 2.29 6.61 -51.93 -0.34 1.95 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -31.50 351.27 -9.76 -41.26 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.29 Total: 2.32 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.51 Total: -5.88 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.30 Total: -51.23 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.50 -9.76 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700582956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.093 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds