Wall clock time and date at job start Tue Mar 31 2020 00:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46578 * 2 1 4 4 C 1.50694 * 120.00443 * 275.00004 * 3 2 1 5 5 C 1.33000 * 119.99747 * 95.00165 * 3 2 1 6 6 C 1.47105 * 120.00084 * 185.57596 * 5 3 2 7 7 O 1.21615 * 119.99637 * 355.17012 * 6 5 3 8 8 N 1.34768 * 120.00288 * 175.16378 * 6 5 3 9 9 C 1.46497 * 120.00147 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47276 * 180.02562 * 9 8 6 11 11 C 1.53004 * 117.44492 * 244.24135 * 10 9 8 12 12 H 1.09004 * 119.53259 * 4.11636 * 11 10 9 13 13 C 1.54790 * 117.94157 * 160.74940 * 11 10 9 14 14 N 1.48143 * 104.41461 * 87.46660 * 13 11 10 15 15 C 1.36945 * 127.84065 * 140.36421 * 14 13 11 16 16 H 1.07992 * 120.00225 * 195.01284 * 15 14 13 17 17 C 1.38818 * 119.99345 * 15.01602 * 15 14 13 18 18 N 1.31614 * 119.99909 * 12.75919 * 17 15 14 19 19 Si 1.86796 * 119.99684 * 192.75350 * 17 15 14 20 20 H 1.48502 * 109.47031 * 84.98976 * 19 17 15 21 21 H 1.48498 * 109.47308 * 324.99028 * 19 17 15 22 22 H 1.48500 * 109.47055 * 204.99003 * 19 17 15 23 23 C 1.48146 * 104.32646 * 320.10947 * 14 13 11 24 24 C 1.53000 * 117.44461 * 175.00388 * 10 9 8 25 25 H 1.08993 * 119.53746 * 354.27763 * 24 10 9 26 26 H 1.08997 * 109.47591 * 59.99796 * 1 2 3 27 27 H 1.09004 * 109.46986 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47458 * 299.99301 * 1 2 3 29 29 H 1.08996 * 109.46947 * 240.00618 * 2 1 3 30 30 H 1.08997 * 109.46957 * 119.99792 * 2 1 3 31 31 H 1.08996 * 109.47378 * 238.76777 * 4 3 2 32 32 H 1.09005 * 109.46943 * 358.76478 * 4 3 2 33 33 H 1.09000 * 109.47606 * 118.76174 * 4 3 2 34 34 H 1.07995 * 120.00144 * 5.58196 * 5 3 2 35 35 H 0.97005 * 119.99886 * 0.02562 * 8 6 5 36 36 H 1.09003 * 109.47365 * 60.00688 * 9 8 6 37 37 H 1.08997 * 109.47042 * 300.00221 * 9 8 6 38 38 H 1.09006 * 115.51658 * 29.58505 * 10 9 8 39 39 H 1.08998 * 110.54417 * 328.72998 * 13 11 10 40 40 H 1.09001 * 110.46480 * 206.16671 * 13 11 10 41 41 H 0.97009 * 119.99730 * 180.02562 * 18 17 15 42 42 H 1.09005 * 110.41239 * 158.62815 * 23 14 13 43 43 H 1.09001 * 110.40729 * 281.06208 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.1761 2.1693 -1.3000 5 6 2.3485 2.0143 1.1475 6 6 2.7210 3.4374 1.1613 7 8 2.8252 4.0488 0.1152 8 7 2.9466 4.0635 2.3332 9 6 3.3170 5.4809 2.3470 10 6 3.5148 5.9423 3.7923 11 6 2.5555 7.0057 4.3306 12 1 1.7305 7.3503 3.7070 13 6 2.4296 7.1585 5.8658 14 7 3.5040 8.1108 6.2310 15 6 3.4513 9.1248 7.1499 16 1 4.2107 9.8926 7.1511 17 6 2.4216 9.1656 8.0800 18 7 1.6453 8.1162 8.2488 19 14 2.1378 10.7098 9.0920 20 1 1.2902 11.6565 8.3235 21 1 3.4431 11.3491 9.3963 22 1 1.4544 10.3515 10.3608 23 6 4.6505 7.7135 5.3811 24 6 4.0211 7.3689 4.0140 25 1 4.3128 7.9749 3.1564 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2118 2.4853 -1.4246 32 1 1.8929 1.5184 -2.1272 33 1 1.5277 3.0454 -1.2887 34 1 2.3320 1.4515 2.0690 35 1 2.8637 3.5757 3.1676 36 1 2.5244 6.0681 1.8831 37 1 4.2445 5.6194 1.7916 38 1 3.8546 5.1748 4.4879 39 1 2.5874 6.1999 6.3599 40 1 1.4539 7.5669 6.1294 41 1 0.9255 8.1449 8.8985 42 1 5.3525 8.5410 5.2785 43 1 5.1499 6.8401 5.8006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700582956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:04 Heat of formation + Delta-G solvation = 5.249022 kcal Electronic energy + Delta-G solvation = -20917.707347 eV Core-core repulsion = 17770.723803 eV Total energy + Delta-G solvation = -3146.983543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98660 -40.24071 -37.26770 -36.18635 -34.95693 -32.76656 -31.80211 -29.59271 -28.89440 -28.14789 -26.50721 -24.76970 -22.92300 -22.01170 -21.39958 -20.85277 -19.54350 -18.84012 -17.90796 -17.08318 -16.70715 -16.31081 -15.98052 -15.57704 -15.29079 -15.18890 -14.85361 -14.63684 -14.38493 -14.26877 -13.77443 -13.46988 -13.34251 -13.19339 -13.01521 -12.89732 -12.73500 -12.60293 -12.32512 -12.24154 -11.98306 -11.93901 -11.75508 -11.73704 -10.94601 -10.82626 -10.64041 -10.47825 -10.26435 -9.78984 -8.92770 -7.93904 -5.28156 0.43677 1.45573 1.48196 1.56146 2.19553 2.35465 2.47936 2.76424 3.24681 3.60651 3.68528 3.75899 3.84534 3.91635 4.17327 4.26884 4.28943 4.35410 4.42749 4.46010 4.52900 4.66693 4.69303 4.73016 4.79381 4.86482 4.91747 5.00709 5.05391 5.11079 5.15057 5.22858 5.33636 5.37437 5.43696 5.51036 5.52212 5.60396 5.63399 5.63801 6.15794 6.64472 6.99634 7.30699 7.67167 8.45750 9.20406 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035434 B = 0.002720 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.001378 B =10291.252429 C =10786.152608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.026 4.026 4 C -0.114 4.114 5 C -0.243 4.243 6 C 0.536 3.464 7 O -0.583 6.583 8 N -0.716 5.716 9 C 0.165 3.835 10 C -0.111 4.111 11 C -0.177 4.177 12 H 0.109 0.891 13 C 0.190 3.810 14 N -0.621 5.621 15 C -0.243 4.243 16 H 0.080 0.920 17 C -0.063 4.063 18 N -0.946 5.946 19 Si 0.979 3.021 20 H -0.285 1.285 21 H -0.268 1.268 22 H -0.293 1.293 23 C 0.148 3.852 24 C -0.158 4.158 25 H 0.127 0.873 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.150 0.850 35 H 0.413 0.587 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.005 0.995 40 H 0.048 0.952 41 H 0.250 0.750 42 H 0.058 0.942 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 -16.595 -16.374 23.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.027 4.027 4 C -0.170 4.170 5 C -0.263 4.263 6 C 0.327 3.673 7 O -0.465 6.465 8 N -0.368 5.368 9 C 0.041 3.959 10 C -0.130 4.130 11 C -0.197 4.197 12 H 0.127 0.873 13 C 0.065 3.935 14 N -0.345 5.345 15 C -0.372 4.372 16 H 0.098 0.902 17 C -0.256 4.256 18 N -0.593 5.593 19 Si 0.807 3.193 20 H -0.212 1.212 21 H -0.192 1.192 22 H -0.220 1.220 23 C 0.022 3.978 24 C -0.178 4.178 25 H 0.145 0.855 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.168 0.832 35 H 0.250 0.750 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.023 0.977 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.574 -16.024 -16.854 23.263 hybrid contribution -0.348 0.843 1.357 1.635 sum 0.226 -15.181 -15.497 21.695 Atomic orbital electron populations 1.21724 0.93735 1.02922 1.02050 1.20823 0.96735 0.90824 1.04620 1.22837 0.88793 0.96486 0.94632 1.20958 1.02405 0.99298 0.94359 1.22488 1.10283 0.92962 1.00589 1.19075 0.76478 0.88742 0.82973 1.90756 1.53933 1.69181 1.32679 1.45859 1.70254 1.11357 1.09307 1.20627 1.00341 0.81367 0.93520 1.22436 1.02022 0.92228 0.96284 1.24112 0.93865 1.04493 0.97192 0.87283 1.20848 0.93127 0.91011 0.88521 1.45554 1.09226 1.35444 1.44253 1.19375 1.10248 1.00512 1.07025 0.90196 1.25723 0.99794 1.00585 0.99537 1.70111 1.21911 1.29303 1.37993 0.85093 0.78119 0.78799 0.77308 1.21213 1.19236 1.21973 1.21309 0.90157 0.97466 0.88820 1.23746 0.97437 0.97522 0.99076 0.85521 0.92729 0.90500 0.92995 0.89186 0.89396 0.91666 0.90884 0.91944 0.83221 0.75036 0.92255 0.90829 0.87307 0.97697 0.93339 0.94096 0.92348 0.95593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.09 -0.96 6.03 29.85 0.18 -0.78 16 3 C -0.03 -0.42 5.36 -17.62 -0.09 -0.52 16 4 C -0.11 -2.18 8.34 71.23 0.59 -1.59 16 5 C -0.24 -4.46 9.63 23.43 0.23 -4.24 16 6 C 0.54 13.43 7.73 86.57 0.67 14.10 16 7 O -0.58 -18.40 13.10 -4.08 -0.05 -18.46 16 8 N -0.72 -16.40 5.55 -466.72 -2.59 -18.99 16 9 C 0.17 4.27 5.95 86.38 0.51 4.78 16 10 C -0.11 -3.21 5.39 -10.79 -0.06 -3.27 16 11 C -0.18 -6.58 6.76 -9.75 -0.07 -6.64 16 12 H 0.11 3.91 8.12 -2.39 -0.02 3.89 16 13 C 0.19 9.34 5.71 86.67 0.50 9.83 16 14 N -0.62 -32.28 3.37 -687.34 -2.32 -34.60 16 15 C -0.24 -13.74 10.34 84.03 0.87 -12.87 16 16 H 0.08 4.33 7.86 -2.91 -0.02 4.31 16 17 C -0.06 -3.57 5.35 84.86 0.45 -3.11 16 18 N -0.95 -57.00 11.00 21.65 0.24 -56.76 16 19 Si 0.98 45.69 29.57 68.60 2.03 47.72 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 23 C 0.15 6.08 7.03 86.54 0.61 6.69 16 24 C -0.16 -5.33 6.85 -9.89 -0.07 -5.39 16 25 H 0.13 3.76 8.14 -2.39 -0.02 3.74 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 0.72 8.13 -2.39 -0.02 0.70 16 30 H 0.09 0.72 7.99 -2.39 -0.02 0.70 16 31 H 0.06 1.47 7.36 -2.39 -0.02 1.45 16 32 H 0.07 1.02 7.99 -2.38 -0.02 1.00 16 33 H 0.06 1.48 7.10 -2.39 -0.02 1.46 16 34 H 0.15 1.94 8.00 -2.91 -0.02 1.92 16 35 H 0.41 7.61 8.39 -92.70 -0.78 6.84 16 36 H 0.06 1.67 7.94 -2.39 -0.02 1.65 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.11 3.09 8.04 -2.38 -0.02 3.07 16 39 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.05 2.71 6.61 -2.39 -0.02 2.69 16 41 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 42 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -69.58 351.27 2.55 -67.04 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.21 Total: 17.85 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.04 Total: -3.80 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.67 Total: -110.36 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.05 Total: -18.46 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -69.58 2.55 -67.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700582956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.286 kcal (2) G-P(sol) polarization free energy of solvation -69.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds