Wall clock time and date at job start Tue Mar 31 2020 00:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32988 * 120.00113 * 2 1 4 4 C 1.47106 * 120.00051 * 173.16589 * 3 2 1 5 5 O 1.21612 * 119.99828 * 353.83356 * 4 3 2 6 6 N 1.34778 * 119.99885 * 173.83588 * 4 3 2 7 7 C 1.46501 * 119.99435 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.49928 * 35.06598 * 7 6 4 9 9 C 1.53040 * 109.52011 * 155.11105 * 7 6 4 10 10 C 1.53045 * 109.53794 * 181.29880 * 9 7 6 11 11 C 1.53186 * 109.33948 * 298.68396 * 10 9 7 12 12 N 1.46930 * 108.77522 * 54.62064 * 11 10 9 13 13 C 1.36938 * 120.62971 * 126.41370 * 12 11 10 14 14 H 1.08002 * 119.99474 * 210.79552 * 13 12 11 15 15 C 1.38807 * 120.00083 * 30.79965 * 13 12 11 16 16 N 1.31620 * 120.00282 * 11.76044 * 15 13 12 17 17 Si 1.86799 * 119.99898 * 191.76177 * 15 13 12 18 18 H 1.48494 * 109.47223 * 59.99949 * 17 15 13 19 19 H 1.48502 * 109.47456 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46894 * 299.99616 * 17 15 13 21 21 C 1.46924 * 118.73973 * 306.38589 * 12 11 10 22 22 C 1.50700 * 119.99585 * 180.02562 * 2 1 3 23 23 C 1.52993 * 117.50296 * 1.03382 * 22 2 1 24 24 C 1.53001 * 117.49984 * 292.37579 * 22 2 1 25 25 H 1.09002 * 109.47410 * 89.99591 * 1 2 3 26 26 H 1.09000 * 109.47521 * 209.99834 * 1 2 3 27 27 H 1.09008 * 109.46838 * 329.99793 * 1 2 3 28 28 H 1.08005 * 120.00154 * 353.16708 * 3 2 1 29 29 H 0.96991 * 120.00352 * 359.97438 * 6 4 3 30 30 H 1.09000 * 109.43457 * 61.29462 * 9 7 6 31 31 H 1.08998 * 109.48948 * 301.33883 * 9 7 6 32 32 H 1.08997 * 109.49365 * 178.71751 * 10 9 7 33 33 H 1.08991 * 109.49802 * 58.65399 * 10 9 7 34 34 H 1.09002 * 109.59055 * 174.40663 * 11 10 9 35 35 H 1.09005 * 109.59303 * 294.68967 * 11 10 9 36 36 H 0.96998 * 119.99962 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.58860 * 173.39143 * 21 12 11 38 38 H 1.08998 * 109.58960 * 293.68443 * 21 12 11 39 39 H 1.09008 * 115.54632 * 146.70738 * 22 2 1 40 40 H 1.09006 * 117.50069 * 0.02562 * 23 22 2 41 41 H 1.08998 * 117.50181 * 145.01639 * 23 22 2 42 42 H 1.08999 * 117.49849 * 214.98809 * 24 22 2 43 43 H 1.09000 * 117.49952 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6351 1.1562 0.1516 5 8 4.2250 0.1195 0.3889 6 7 4.3219 2.3092 0.0275 7 6 5.7791 2.3137 0.1791 8 1 6.1895 1.3873 -0.2226 9 6 6.3685 3.5043 -0.5805 10 6 7.8933 3.4910 -0.4494 11 6 8.2766 3.6215 1.0280 12 7 7.5963 2.5641 1.7882 13 6 8.3075 1.7191 2.5978 14 1 7.9677 0.7056 2.7519 15 6 9.4651 2.1653 3.2205 16 7 9.7568 3.4488 3.2257 17 14 10.6090 0.9442 4.0510 18 1 11.0961 -0.0379 3.0494 19 1 11.7650 1.6686 4.6375 20 1 9.8748 0.2312 5.1271 21 6 6.1384 2.4308 1.6637 22 6 2.2604 -1.3052 -0.0006 23 6 1.4385 -2.5953 -0.0256 24 6 2.1661 -2.1759 1.2540 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6377 2.0837 -0.1113 29 1 3.8515 3.1360 -0.1620 30 1 5.9762 4.4314 -0.1625 31 1 6.0940 3.4361 -1.6331 32 1 8.3139 4.3261 -1.0095 33 1 8.2843 2.5538 -0.8453 34 1 9.3557 3.5130 1.1366 35 1 7.9683 4.5984 1.4007 36 1 10.5655 3.7606 3.6612 37 1 5.8068 1.5367 2.1915 38 1 5.6534 3.3085 2.0910 39 1 3.2074 -1.3010 -0.5404 40 1 0.3527 -2.5002 -0.0421 41 1 1.8448 -3.4402 -0.5817 42 1 3.0510 -2.7448 1.5394 43 1 1.5595 -1.8045 2.0800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713059175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:38 Heat of formation + Delta-G solvation = 20.559070 kcal Electronic energy + Delta-G solvation = -21969.217721 eV Core-core repulsion = 18822.898071 eV Total energy + Delta-G solvation = -3146.319650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.77710 -38.04937 -36.94975 -34.17052 -33.41954 -32.31447 -30.40272 -29.13024 -27.61342 -25.23487 -23.66400 -22.34478 -22.08703 -21.87452 -20.30786 -19.48269 -18.34728 -16.90545 -16.70567 -15.93465 -15.22301 -14.80487 -14.56341 -14.28063 -13.89735 -13.67927 -13.35033 -13.22240 -13.03555 -12.91709 -12.44723 -12.32082 -12.25892 -11.74770 -11.60161 -11.33913 -10.99738 -10.84346 -10.80709 -10.72061 -10.36363 -10.22864 -10.19070 -9.87096 -9.76201 -9.58831 -9.22803 -8.91261 -8.63150 -8.34355 -6.57250 -5.73411 -3.20228 1.37456 3.43477 3.47358 3.48878 3.52542 3.58033 3.97710 4.50802 4.55189 4.74857 4.98558 5.03347 5.09590 5.28719 5.33586 5.35949 5.43371 5.49670 5.54365 5.60599 5.67245 5.69922 5.79269 5.89508 6.11675 6.15009 6.22374 6.25083 6.28981 6.33054 6.54350 6.59464 6.67033 6.77527 6.79673 6.92252 7.10055 7.42016 7.71975 7.86481 7.92348 8.52255 8.64114 9.28036 9.88874 10.46143 11.34959 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.004272 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.762687 B = 6552.286210 C = 7569.130934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.011 4.011 3 C -0.221 4.221 4 C 0.540 3.460 5 O -0.533 6.533 6 N -0.721 5.721 7 C 0.127 3.873 8 H 0.084 0.916 9 C -0.114 4.114 10 C -0.140 4.140 11 C 0.168 3.832 12 N -0.588 5.588 13 C -0.250 4.250 14 H 0.065 0.935 15 C 0.004 3.996 16 N -0.907 5.907 17 Si 0.905 3.095 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.143 3.857 22 C -0.115 4.115 23 C -0.193 4.193 24 C -0.154 4.154 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.125 0.875 29 H 0.393 0.607 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.018 0.982 36 H 0.254 0.746 37 H 0.057 0.943 38 H 0.016 0.984 39 H 0.133 0.867 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.446 -3.248 -9.160 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.013 4.013 3 C -0.242 4.242 4 C 0.329 3.671 5 O -0.412 6.412 6 N -0.371 5.371 7 C 0.022 3.978 8 H 0.102 0.898 9 C -0.153 4.153 10 C -0.180 4.180 11 C 0.043 3.957 12 N -0.311 5.311 13 C -0.380 4.380 14 H 0.082 0.918 15 C -0.195 4.195 16 N -0.552 5.552 17 Si 0.735 3.265 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.208 1.208 21 C 0.015 3.985 22 C -0.133 4.133 23 C -0.230 4.230 24 C -0.191 4.191 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.143 0.857 29 H 0.226 0.774 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.036 0.964 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.151 0.849 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.836 -3.902 -8.882 19.431 hybrid contribution 0.361 0.066 0.373 0.523 sum -16.476 -3.835 -8.509 18.936 Atomic orbital electron populations 1.20992 0.91382 1.03167 1.02774 1.21761 0.94993 0.93488 0.91086 1.22429 0.93874 0.98410 1.09532 1.18496 0.87560 0.83764 0.77314 1.90771 1.70884 1.31395 1.48141 1.46063 1.08666 1.09827 1.72526 1.21687 0.77533 0.99453 0.99160 0.89775 1.21672 0.97705 0.97461 0.98426 1.22189 0.93545 1.00719 1.01531 1.20832 0.99460 0.90173 0.85253 1.43961 0.99870 1.36914 1.50355 1.19180 1.05669 0.92234 1.20877 0.91774 1.25119 1.00498 0.95594 0.98250 1.69979 1.26229 1.12162 1.46810 0.86325 0.80291 0.80450 0.79434 1.20939 1.21617 1.20849 1.21187 0.86517 0.98850 0.91905 1.21441 1.00460 0.87748 1.03620 1.23139 0.98763 0.98748 1.02324 1.22799 1.02559 1.02523 0.91223 0.90502 0.90890 0.91073 0.85741 0.77370 0.92339 0.93213 0.92830 0.92518 0.89248 0.96385 0.93622 0.92463 0.96632 0.84902 0.88848 0.88799 0.88418 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 9.50 36.00 0.34 -0.63 16 2 C -0.01 -0.13 5.80 -101.17 -0.59 -0.72 16 3 C -0.22 -2.66 9.62 -37.81 -0.36 -3.03 16 4 C 0.54 8.59 7.64 -12.66 -0.10 8.50 16 5 O -0.53 -10.44 12.99 5.27 0.07 -10.37 16 6 N -0.72 -10.85 5.08 -54.87 -0.28 -11.13 16 7 C 0.13 2.36 2.60 -67.81 -0.18 2.19 16 8 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 9 C -0.11 -1.91 5.36 -26.69 -0.14 -2.05 16 10 C -0.14 -2.68 6.08 -26.61 -0.16 -2.85 16 11 C 0.17 4.07 5.26 -3.71 -0.02 4.05 16 12 N -0.59 -15.35 2.99 -172.32 -0.51 -15.87 16 13 C -0.25 -7.17 9.58 -15.06 -0.14 -7.32 16 14 H 0.06 1.85 7.86 -52.49 -0.41 1.44 16 15 C 0.00 0.10 5.03 -17.43 -0.09 0.02 16 16 N -0.91 -26.72 11.07 55.49 0.61 -26.11 16 17 Si 0.91 22.38 29.57 -169.99 -5.03 17.35 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.14 3.23 6.09 -3.71 -0.02 3.21 16 22 C -0.11 -1.47 4.32 -91.77 -0.40 -1.86 16 23 C -0.19 -1.93 9.80 -26.70 -0.26 -2.19 16 24 C -0.15 -1.86 10.24 -26.70 -0.27 -2.13 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.52 6.35 -51.93 -0.33 0.19 16 27 H 0.07 0.48 8.07 -51.92 -0.42 0.06 16 28 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.39 4.62 8.59 -40.82 -0.35 4.27 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.09 2.41 6.10 -51.93 -0.32 2.10 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.06 1.39 7.93 -51.93 -0.41 0.98 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.13 2.06 6.27 -51.92 -0.33 1.73 16 40 H 0.09 0.77 6.30 -51.93 -0.33 0.44 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -32.04 342.76 -9.44 -41.48 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.07 Total: 4.30 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.39 Total: -4.81 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.18 Total: -53.10 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.04 -9.44 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713059175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.036 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds