Wall clock time and date at job start Tue Mar 31 2020 00:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33000 * 119.99438 * 2 1 4 4 C 1.47101 * 120.00324 * 354.52538 * 3 2 1 5 5 O 1.21611 * 119.99784 * 5.32013 * 4 3 2 6 6 N 1.34770 * 119.99540 * 185.31960 * 4 3 2 7 7 C 1.46511 * 119.99723 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.49476 * 35.06496 * 7 6 4 9 9 C 1.53030 * 109.49591 * 155.12622 * 7 6 4 10 10 C 1.53037 * 109.53717 * 181.28195 * 9 7 6 11 11 C 1.53190 * 109.34509 * 298.68894 * 10 9 7 12 12 N 1.46929 * 108.77428 * 54.61502 * 11 10 9 13 13 C 1.36933 * 120.62975 * 126.41689 * 12 11 10 14 14 H 1.08002 * 120.00226 * 211.11783 * 13 12 11 15 15 C 1.38811 * 120.00222 * 31.12321 * 13 12 11 16 16 N 1.31626 * 119.99702 * 11.00045 * 15 13 12 17 17 Si 1.86800 * 120.00102 * 191.00391 * 15 13 12 18 18 H 1.48499 * 109.47202 * 89.99919 * 17 15 13 19 19 H 1.48506 * 109.46859 * 209.99586 * 17 15 13 20 20 H 1.48499 * 109.46964 * 329.99506 * 17 15 13 21 21 C 1.46924 * 118.73663 * 306.39261 * 12 11 10 22 22 C 1.50693 * 120.00082 * 180.02562 * 2 1 3 23 23 C 1.53002 * 117.50002 * 14.95191 * 22 2 1 24 24 C 1.52998 * 117.50241 * 306.29069 * 22 2 1 25 25 H 1.08993 * 109.47409 * 65.16048 * 1 2 3 26 26 H 1.08999 * 109.46942 * 185.16616 * 1 2 3 27 27 H 1.09004 * 109.47188 * 305.15600 * 1 2 3 28 28 H 1.08003 * 119.99358 * 174.53002 * 3 2 1 29 29 H 0.96998 * 120.00900 * 0.02562 * 6 4 3 30 30 H 1.09009 * 109.43416 * 61.28402 * 9 7 6 31 31 H 1.09002 * 109.49159 * 301.32236 * 9 7 6 32 32 H 1.09004 * 109.49992 * 178.71929 * 10 9 7 33 33 H 1.09005 * 109.49659 * 58.65896 * 10 9 7 34 34 H 1.09001 * 109.59186 * 174.40612 * 11 10 9 35 35 H 1.09001 * 109.58329 * 294.68954 * 11 10 9 36 36 H 0.97006 * 119.99489 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.58550 * 173.39568 * 21 12 11 38 38 H 1.08992 * 109.58993 * 293.82043 * 21 12 11 39 39 H 1.09000 * 115.54846 * 160.62045 * 22 2 1 40 40 H 1.09004 * 117.49892 * 359.97438 * 23 22 2 41 41 H 1.09000 * 117.49757 * 145.01569 * 23 22 2 42 42 H 1.08998 * 117.50374 * 214.98035 * 24 22 2 43 43 H 1.09003 * 117.49451 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 1.4414 2.4229 -0.1215 5 8 0.2253 2.4273 -0.1246 6 7 2.1199 3.5823 -0.2295 7 6 1.3923 4.8483 -0.3500 8 1 0.4806 4.8020 0.2457 9 6 2.2736 5.9937 0.1532 10 6 1.5029 7.3124 0.0576 11 6 1.1435 7.5851 -1.4063 12 7 0.4197 6.4231 -1.9399 13 6 -0.8018 6.5771 -2.5393 14 1 -1.5364 5.7878 -2.4787 15 6 -1.0959 7.7477 -3.2250 16 7 -0.1408 8.6148 -3.4865 17 14 -2.8471 8.0924 -3.7763 18 1 -3.5662 8.8312 -2.7076 19 1 -2.8238 8.9116 -5.0148 20 1 -3.5431 6.8085 -4.0451 21 6 1.0318 5.0930 -1.8186 22 6 2.2605 -1.3050 -0.0006 23 6 1.4783 -2.5723 -0.3513 24 6 1.9182 -2.3190 1.0928 25 1 -0.3634 0.4317 -0.9325 26 1 -0.3633 -1.0235 0.0925 27 1 -0.3634 0.5918 0.8402 28 1 3.2483 1.1540 0.0892 29 1 3.0899 3.5788 -0.2274 30 1 3.1740 6.0542 -0.4583 31 1 2.5515 5.8099 1.1911 32 1 2.1230 8.1245 0.4374 33 1 0.5902 7.2441 0.6497 34 1 0.5103 8.4702 -1.4685 35 1 2.0548 7.7466 -1.9822 36 1 -0.3464 9.4330 -3.9653 37 1 0.3247 4.3336 -2.1527 38 1 1.9339 5.0488 -2.4286 39 1 3.2990 -1.2481 -0.3269 40 1 0.4185 -2.4621 -0.5812 41 1 2.0022 -3.3493 -0.9080 42 1 2.7313 -2.9295 1.4856 43 1 1.1476 -2.0423 1.8123 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713059176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:42 Heat of formation + Delta-G solvation = 18.133923 kcal Electronic energy + Delta-G solvation = -21748.596791 eV Core-core repulsion = 18602.171979 eV Total energy + Delta-G solvation = -3146.424812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.76368 -38.25875 -37.18558 -34.28086 -33.11941 -32.35858 -30.40264 -29.04029 -27.33514 -25.23879 -24.26718 -22.67058 -22.11121 -21.82225 -20.14681 -19.42310 -18.37677 -16.84959 -16.64465 -16.30086 -15.20504 -14.83842 -14.75290 -14.52629 -13.96882 -13.48640 -13.40187 -13.14334 -13.09157 -12.68186 -12.35078 -12.26968 -12.09618 -11.74267 -11.69733 -11.39756 -11.14737 -11.00754 -10.83184 -10.77328 -10.72069 -10.22644 -10.16583 -9.87798 -9.78209 -9.59189 -9.24043 -9.00912 -8.63109 -8.35240 -6.57368 -5.73681 -3.21227 1.36941 3.40751 3.42192 3.48019 3.50496 3.56370 3.73441 4.37690 4.55578 4.57142 4.66893 4.79087 4.99692 5.23497 5.30665 5.37411 5.45065 5.50651 5.59960 5.63503 5.67805 5.78183 5.79104 5.81773 5.91048 6.08789 6.15732 6.22928 6.30429 6.46488 6.52114 6.59546 6.67060 6.77090 6.78880 6.91831 7.09251 7.42149 7.72407 7.86416 7.91332 8.51955 8.62265 9.27758 9.88317 10.45720 11.34525 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.003724 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.472177 B = 7517.291519 C = 8361.584760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.008 4.008 3 C -0.223 4.223 4 C 0.540 3.460 5 O -0.538 6.538 6 N -0.720 5.720 7 C 0.127 3.873 8 H 0.084 0.916 9 C -0.114 4.114 10 C -0.140 4.140 11 C 0.168 3.832 12 N -0.588 5.588 13 C -0.249 4.249 14 H 0.065 0.935 15 C 0.003 3.997 16 N -0.907 5.907 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.278 1.278 21 C 0.143 3.857 22 C -0.131 4.131 23 C -0.173 4.173 24 C -0.168 4.168 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.394 0.606 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.018 0.982 36 H 0.253 0.747 37 H 0.057 0.943 38 H 0.016 0.984 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 -16.926 9.106 20.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.010 4.010 3 C -0.244 4.244 4 C 0.329 3.671 5 O -0.418 6.418 6 N -0.370 5.370 7 C 0.021 3.979 8 H 0.103 0.897 9 C -0.153 4.153 10 C -0.180 4.180 11 C 0.042 3.958 12 N -0.311 5.311 13 C -0.379 4.379 14 H 0.083 0.917 15 C -0.195 4.195 16 N -0.552 5.552 17 Si 0.736 3.264 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.016 3.984 22 C -0.149 4.149 23 C -0.210 4.210 24 C -0.205 4.205 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.140 0.860 29 H 0.227 0.773 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.328 -16.733 8.987 20.358 hybrid contribution -0.082 0.310 -0.349 0.474 sum 7.246 -16.423 8.638 19.921 Atomic orbital electron populations 1.21076 0.90663 1.00886 1.04779 1.21752 0.96214 0.92220 0.90815 1.22342 0.99993 0.92170 1.09935 1.18453 0.87507 0.84165 0.76939 1.90797 1.13604 1.87156 1.50217 1.46039 1.09817 1.06752 1.74408 1.21702 0.95157 0.80754 1.00267 0.89750 1.21671 0.98464 0.95683 0.99439 1.22193 0.99007 0.94832 1.01953 1.20844 0.95708 0.92041 0.87175 1.43967 1.19826 1.00569 1.66756 1.19236 0.89965 1.02558 1.26121 0.91695 1.25146 0.97644 0.98977 0.97769 1.69991 1.30502 1.11307 1.43381 0.86231 0.84401 0.77989 0.77820 1.21395 1.21719 1.20358 1.21190 0.96349 0.89350 0.91559 1.21278 0.99607 0.88489 1.05524 1.23101 1.01345 0.98192 0.98326 1.22990 1.03816 1.01592 0.92078 0.89677 0.93025 0.89729 0.85964 0.77327 0.92333 0.93202 0.92822 0.92516 0.89195 0.96367 0.93673 0.92464 0.96607 0.86788 0.87851 0.88325 0.88336 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 8.02 36.01 0.29 -1.19 16 2 C -0.01 -0.09 5.82 -101.17 -0.59 -0.68 16 3 C -0.22 -2.73 9.67 -37.80 -0.37 -3.10 16 4 C 0.54 8.64 7.69 -12.67 -0.10 8.55 16 5 O -0.54 -10.57 12.77 5.27 0.07 -10.50 16 6 N -0.72 -10.91 5.08 -54.87 -0.28 -11.18 16 7 C 0.13 2.36 2.60 -67.81 -0.18 2.18 16 8 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 9 C -0.11 -1.91 5.36 -26.70 -0.14 -2.05 16 10 C -0.14 -2.69 6.08 -26.61 -0.16 -2.85 16 11 C 0.17 4.06 5.26 -3.71 -0.02 4.04 16 12 N -0.59 -15.35 2.99 -172.32 -0.51 -15.86 16 13 C -0.25 -7.14 9.58 -15.06 -0.14 -7.29 16 14 H 0.07 1.88 7.85 -52.49 -0.41 1.47 16 15 C 0.00 0.08 5.04 -17.43 -0.09 -0.01 16 16 N -0.91 -26.72 11.05 55.49 0.61 -26.11 16 17 Si 0.91 22.37 29.57 -169.99 -5.03 17.35 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.14 3.23 6.09 -3.71 -0.02 3.21 16 22 C -0.13 -1.14 6.00 -91.77 -0.55 -1.69 16 23 C -0.17 -1.29 9.79 -26.69 -0.26 -1.55 16 24 C -0.17 -1.22 10.06 -26.69 -0.27 -1.49 16 25 H 0.08 1.24 7.37 -51.93 -0.38 0.86 16 26 H 0.05 0.52 5.74 -51.93 -0.30 0.22 16 27 H 0.08 1.20 7.09 -51.93 -0.37 0.83 16 28 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.39 4.67 8.59 -40.82 -0.35 4.32 16 30 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.09 2.43 6.10 -51.93 -0.32 2.11 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 37 H 0.06 1.39 7.93 -51.93 -0.41 0.98 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.10 0.80 6.27 -51.93 -0.33 0.47 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -31.95 342.14 -9.63 -41.57 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.04 Total: 3.50 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.60 Total: -3.92 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.18 Total: -53.16 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.95 -9.63 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713059176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.707 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds