Wall clock time and date at job start Tue Mar 31 2020 00:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33000 * 119.99438 * 2 1 4 4 C 1.47101 * 120.00324 * 354.52538 * 3 2 1 5 5 O 1.21611 * 119.99784 * 5.32013 * 4 3 2 6 6 N 1.34770 * 119.99540 * 185.31960 * 4 3 2 7 7 C 1.46511 * 119.99723 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.49476 * 35.06496 * 7 6 4 9 9 C 1.53030 * 109.49591 * 155.12622 * 7 6 4 10 10 C 1.53037 * 109.53717 * 181.28195 * 9 7 6 11 11 C 1.53190 * 109.34509 * 298.68894 * 10 9 7 12 12 N 1.46929 * 108.77428 * 54.61502 * 11 10 9 13 13 C 1.36933 * 120.62975 * 126.41689 * 12 11 10 14 14 H 1.08002 * 120.00226 * 211.11783 * 13 12 11 15 15 C 1.38811 * 120.00222 * 31.12321 * 13 12 11 16 16 N 1.31626 * 119.99702 * 11.00045 * 15 13 12 17 17 Si 1.86800 * 120.00102 * 191.00391 * 15 13 12 18 18 H 1.48499 * 109.47202 * 89.99919 * 17 15 13 19 19 H 1.48506 * 109.46859 * 209.99586 * 17 15 13 20 20 H 1.48499 * 109.46964 * 329.99506 * 17 15 13 21 21 C 1.46924 * 118.73663 * 306.39261 * 12 11 10 22 22 C 1.50693 * 120.00082 * 180.02562 * 2 1 3 23 23 C 1.53002 * 117.50002 * 14.95191 * 22 2 1 24 24 C 1.52998 * 117.50241 * 306.29069 * 22 2 1 25 25 H 1.08993 * 109.47409 * 65.16048 * 1 2 3 26 26 H 1.08999 * 109.46942 * 185.16616 * 1 2 3 27 27 H 1.09004 * 109.47188 * 305.15600 * 1 2 3 28 28 H 1.08003 * 119.99358 * 174.53002 * 3 2 1 29 29 H 0.96998 * 120.00900 * 0.02562 * 6 4 3 30 30 H 1.09009 * 109.43416 * 61.28402 * 9 7 6 31 31 H 1.09002 * 109.49159 * 301.32236 * 9 7 6 32 32 H 1.09004 * 109.49992 * 178.71929 * 10 9 7 33 33 H 1.09005 * 109.49659 * 58.65896 * 10 9 7 34 34 H 1.09001 * 109.59186 * 174.40612 * 11 10 9 35 35 H 1.09001 * 109.58329 * 294.68954 * 11 10 9 36 36 H 0.97006 * 119.99489 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.58550 * 173.39568 * 21 12 11 38 38 H 1.08992 * 109.58993 * 293.82043 * 21 12 11 39 39 H 1.09000 * 115.54846 * 160.62045 * 22 2 1 40 40 H 1.09004 * 117.49892 * 359.97438 * 23 22 2 41 41 H 1.09000 * 117.49757 * 145.01569 * 23 22 2 42 42 H 1.08998 * 117.50374 * 214.98035 * 24 22 2 43 43 H 1.09003 * 117.49451 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 1.4414 2.4229 -0.1215 5 8 0.2253 2.4273 -0.1246 6 7 2.1199 3.5823 -0.2295 7 6 1.3923 4.8483 -0.3500 8 1 0.4806 4.8020 0.2457 9 6 2.2736 5.9937 0.1532 10 6 1.5029 7.3124 0.0576 11 6 1.1435 7.5851 -1.4063 12 7 0.4197 6.4231 -1.9399 13 6 -0.8018 6.5771 -2.5393 14 1 -1.5364 5.7878 -2.4787 15 6 -1.0959 7.7477 -3.2250 16 7 -0.1408 8.6148 -3.4865 17 14 -2.8471 8.0924 -3.7763 18 1 -3.5662 8.8312 -2.7076 19 1 -2.8238 8.9116 -5.0148 20 1 -3.5431 6.8085 -4.0451 21 6 1.0318 5.0930 -1.8186 22 6 2.2605 -1.3050 -0.0006 23 6 1.4783 -2.5723 -0.3513 24 6 1.9182 -2.3190 1.0928 25 1 -0.3634 0.4317 -0.9325 26 1 -0.3633 -1.0235 0.0925 27 1 -0.3634 0.5918 0.8402 28 1 3.2483 1.1540 0.0892 29 1 3.0899 3.5788 -0.2274 30 1 3.1740 6.0542 -0.4583 31 1 2.5515 5.8099 1.1911 32 1 2.1230 8.1245 0.4374 33 1 0.5902 7.2441 0.6497 34 1 0.5103 8.4702 -1.4685 35 1 2.0548 7.7466 -1.9822 36 1 -0.3464 9.4330 -3.9653 37 1 0.3247 4.3336 -2.1527 38 1 1.9339 5.0488 -2.4286 39 1 3.2990 -1.2481 -0.3269 40 1 0.4185 -2.4621 -0.5812 41 1 2.0022 -3.3493 -0.9080 42 1 2.7313 -2.9295 1.4856 43 1 1.1476 -2.0423 1.8123 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713059176.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:41 Heat of formation + Delta-G solvation = -1.441884 kcal Electronic energy + Delta-G solvation = -21749.445661 eV Core-core repulsion = 18602.171979 eV Total energy + Delta-G solvation = -3147.273683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.04700 -39.34267 -38.54145 -35.94302 -34.15267 -34.04923 -32.34254 -30.60772 -28.47798 -27.27553 -25.29719 -23.89734 -23.36423 -23.18912 -21.44307 -21.01881 -19.38045 -18.73798 -17.89390 -17.32764 -16.86847 -16.28323 -16.15051 -15.73776 -15.48435 -15.24525 -14.87201 -14.59314 -14.19830 -14.10151 -13.88410 -13.83413 -13.35781 -13.00722 -12.91041 -12.78216 -12.56278 -12.43614 -12.15765 -12.12354 -11.99945 -11.88186 -11.73298 -11.54524 -11.33174 -11.31881 -10.62820 -10.55271 -10.16166 -9.72840 -8.65813 -7.91329 -5.43051 0.37759 1.42895 1.43895 1.53723 2.21359 2.37272 2.49884 3.04928 3.23110 3.56467 3.75448 3.87087 3.89066 3.98215 4.11424 4.14072 4.17898 4.25263 4.31846 4.47688 4.58393 4.67094 4.78842 4.80120 4.84579 4.91463 5.00816 5.01680 5.10284 5.14623 5.15388 5.17095 5.27075 5.27636 5.48391 5.54002 5.56774 5.61254 5.63064 5.76739 6.37345 6.72409 7.12036 7.39954 7.80107 8.31389 9.13558 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.003724 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.472177 B = 7517.291519 C = 8361.584760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.001 4.001 3 C -0.232 4.232 4 C 0.532 3.468 5 O -0.585 6.585 6 N -0.708 5.708 7 C 0.143 3.857 8 H 0.054 0.946 9 C -0.104 4.104 10 C -0.130 4.130 11 C 0.172 3.828 12 N -0.608 5.608 13 C -0.270 4.270 14 H 0.051 0.949 15 C -0.043 4.043 16 N -0.931 5.931 17 Si 0.970 3.030 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.147 3.853 22 C -0.142 4.142 23 C -0.172 4.172 24 C -0.158 4.158 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.159 0.841 29 H 0.414 0.586 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.005 0.995 36 H 0.253 0.747 37 H 0.027 0.973 38 H 0.019 0.981 39 H 0.133 0.867 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.143 -18.537 10.296 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.003 4.003 3 C -0.252 4.252 4 C 0.323 3.677 5 O -0.467 6.467 6 N -0.359 5.359 7 C 0.036 3.964 8 H 0.072 0.928 9 C -0.141 4.141 10 C -0.170 4.170 11 C 0.047 3.953 12 N -0.332 5.332 13 C -0.400 4.400 14 H 0.068 0.932 15 C -0.239 4.239 16 N -0.576 5.576 17 Si 0.797 3.203 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C 0.020 3.980 22 C -0.160 4.160 23 C -0.209 4.209 24 C -0.195 4.195 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.176 0.824 29 H 0.251 0.749 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.023 0.977 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.150 0.850 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.287 -18.364 10.197 22.966 hybrid contribution -0.711 0.735 -0.747 1.266 sum 8.575 -17.629 9.451 21.763 Atomic orbital electron populations 1.20976 0.92151 1.01642 1.02449 1.22000 0.95517 0.93773 0.89018 1.22367 1.01430 0.90084 1.11332 1.19196 0.87210 0.85476 0.75819 1.90789 1.15859 1.87840 1.52237 1.45809 1.10722 1.05358 1.74001 1.21195 0.95242 0.83326 0.96609 0.92781 1.21599 0.97839 0.92872 1.01839 1.22029 0.99608 0.97524 0.97817 1.20718 0.93994 0.90307 0.90273 1.44198 1.19556 1.02219 1.67242 1.19397 0.91156 1.02656 1.26823 0.93151 1.25862 1.01450 0.98654 0.97914 1.70132 1.32195 1.11469 1.43816 0.85245 0.79867 0.77758 0.77427 1.20704 1.21249 1.20035 1.21206 0.95227 0.87092 0.94500 1.21336 1.00224 0.87143 1.07281 1.23201 1.01049 0.97753 0.98885 1.23086 1.04127 1.00538 0.91725 0.92421 0.90638 0.91853 0.82362 0.74879 0.90642 0.89570 0.89704 0.93565 0.92606 0.97728 0.93788 0.95471 0.96347 0.84966 0.88556 0.86561 0.86273 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 8.02 71.24 0.57 -2.39 16 2 C 0.00 -0.02 5.82 -17.62 -0.10 -0.13 16 3 C -0.23 -5.26 9.67 23.43 0.23 -5.04 16 4 C 0.53 16.95 7.69 86.57 0.67 17.61 16 5 O -0.58 -24.03 12.77 -4.07 -0.05 -24.08 16 6 N -0.71 -20.59 5.08 -445.77 -2.26 -22.85 16 7 C 0.14 5.30 2.60 45.06 0.12 5.42 16 8 H 0.05 2.36 7.58 -2.39 -0.02 2.35 16 9 C -0.10 -3.21 5.36 30.62 0.16 -3.04 16 10 C -0.13 -4.84 6.08 30.67 0.19 -4.65 16 11 C 0.17 8.49 5.26 86.36 0.45 8.94 16 12 N -0.61 -32.85 2.99 -699.10 -2.09 -34.93 16 13 C -0.27 -16.12 9.58 84.03 0.81 -15.32 16 14 H 0.05 3.08 7.85 -2.91 -0.02 3.05 16 15 C -0.04 -2.51 5.04 84.86 0.43 -2.08 16 16 N -0.93 -56.20 11.05 21.65 0.24 -55.96 16 17 Si 0.97 47.05 29.57 68.60 2.03 49.08 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 C 0.15 6.83 6.09 86.36 0.53 7.36 16 22 C -0.14 -2.06 6.00 -11.54 -0.07 -2.12 16 23 C -0.17 -2.11 9.79 30.62 0.30 -1.81 16 24 C -0.16 -1.81 10.06 30.62 0.31 -1.50 16 25 H 0.06 1.79 7.37 -2.39 -0.02 1.77 16 26 H 0.07 1.49 5.74 -2.39 -0.01 1.48 16 27 H 0.06 1.89 7.09 -2.39 -0.02 1.87 16 28 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 29 H 0.41 8.65 8.59 -92.71 -0.80 7.85 16 30 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 33 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.06 3.11 6.10 -2.39 -0.01 3.10 16 35 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 37 H 0.03 1.38 7.93 -2.39 -0.02 1.36 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 1.31 6.27 -2.39 -0.01 1.30 16 41 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -73.39 342.14 2.64 -70.75 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.20 Total: 16.76 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 4.58 Total: 1.24 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -4.11 Total: -113.74 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.05 Total: -24.08 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -73.39 2.64 -70.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713059176.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.305 kcal (2) G-P(sol) polarization free energy of solvation -73.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds