Wall clock time and date at job start Tue Mar 31 2020 00:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50701 * 119.99974 * 2 1 4 4 C 1.32994 * 119.99690 * 180.02562 * 2 1 3 5 5 C 1.47097 * 120.00007 * 354.01538 * 4 2 1 6 6 O 1.21614 * 120.00166 * 5.69588 * 5 4 2 7 7 N 1.34783 * 120.00131 * 185.69330 * 5 4 2 8 8 C 1.46496 * 119.99983 * 180.02562 * 7 5 4 9 9 H 1.08994 * 115.55352 * 9.31961 * 8 7 5 10 10 C 1.53029 * 117.52121 * 223.58983 * 8 7 5 11 11 C 1.52819 * 117.49785 * 155.00190 * 8 7 5 12 12 C 1.53183 * 117.71165 * 215.12744 * 11 8 7 13 13 C 1.53351 * 108.76895 * 201.11466 * 12 11 8 14 14 N 1.46831 * 108.81802 * 308.69489 * 13 12 11 15 15 C 1.36938 * 120.38249 * 236.87250 * 14 13 12 16 16 H 1.08003 * 120.00234 * 148.32294 * 15 14 13 17 17 C 1.38811 * 119.99932 * 328.32534 * 15 14 13 18 18 N 1.31625 * 119.99688 * 347.72766 * 17 15 14 19 19 Si 1.86793 * 120.00182 * 167.73297 * 17 15 14 20 20 H 1.48503 * 109.47002 * 179.97438 * 19 17 15 21 21 H 1.48507 * 109.46691 * 299.99424 * 19 17 15 22 22 H 1.48496 * 109.47477 * 59.99544 * 19 17 15 23 23 C 1.46846 * 119.24006 * 57.14418 * 14 13 12 24 24 C 1.53179 * 117.71573 * 359.88831 * 11 8 7 25 25 H 1.09006 * 109.47266 * 243.70947 * 1 2 3 26 26 H 1.09011 * 109.46859 * 3.70448 * 1 2 3 27 27 H 1.08993 * 109.47522 * 123.70114 * 1 2 3 28 28 H 1.09001 * 109.47132 * 239.99940 * 3 2 1 29 29 H 1.08999 * 109.47386 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.46896 * 120.00772 * 3 2 1 31 31 H 1.08004 * 119.99732 * 174.01831 * 4 2 1 32 32 H 0.97002 * 119.99367 * 0.02562 * 7 5 4 33 33 H 1.09003 * 117.50330 * 145.05836 * 10 8 7 34 34 H 1.09005 * 117.50828 * 0.02562 * 10 8 7 35 35 H 1.08999 * 109.59210 * 81.33348 * 12 11 8 36 36 H 1.08998 * 109.70770 * 320.96940 * 12 11 8 37 37 H 1.08998 * 109.58273 * 188.88550 * 13 12 11 38 38 H 1.09005 * 109.57638 * 68.49143 * 13 12 11 39 39 H 0.96998 * 119.99669 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.57791 * 62.64940 * 23 14 13 41 41 H 1.09003 * 109.58035 * 183.05762 * 23 14 13 42 42 H 1.09002 * 109.58731 * 278.66590 * 24 11 8 43 43 H 1.08997 * 109.58950 * 39.10139 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4423 -2.4222 0.1317 6 8 0.2262 -2.4274 0.1373 7 7 2.1216 -3.5807 0.2467 8 6 1.3950 -4.8460 0.3778 9 1 0.3187 -4.7890 0.2161 10 6 1.9014 -5.8476 1.4181 11 6 2.1097 -6.1199 -0.0714 12 6 1.2636 -7.2209 -0.7182 13 6 2.0165 -8.5522 -0.6053 14 7 3.3813 -8.3691 -1.1148 15 6 3.8502 -9.1519 -2.1359 16 1 4.5672 -8.7518 -2.8376 17 6 3.4040 -10.4595 -2.2692 18 7 2.7265 -11.0263 -1.2933 19 14 3.7651 -11.4148 -3.8332 20 1 3.1854 -12.7778 -3.7257 21 1 3.1630 -10.7103 -4.9936 22 1 5.2344 -11.5160 -4.0235 23 6 4.2399 -7.3411 -0.5128 24 6 3.5302 -5.9814 -0.6277 25 1 -0.3634 -0.4552 0.9214 26 1 -0.3633 1.0256 -0.0664 27 1 -0.3634 -0.5702 -0.8549 28 1 2.8871 1.3629 -0.8900 29 1 1.5522 2.1336 0.0005 30 1 2.8872 1.3628 0.8899 31 1 3.2475 -1.1543 -0.0980 32 1 3.0916 -3.5765 0.2426 33 1 1.1581 -6.4497 1.9407 34 1 2.7751 -5.5651 2.0054 35 1 1.0964 -6.9838 -1.7689 36 1 0.3057 -7.2982 -0.2041 37 1 1.5050 -9.3123 -1.1957 38 1 2.0550 -8.8626 0.4389 39 1 2.4151 -11.9402 -1.3863 40 1 4.4126 -7.5783 0.5370 41 1 5.1918 -7.3041 -1.0424 42 1 3.4851 -5.6774 -1.6735 43 1 4.0773 -5.2354 -0.0513 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713090322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:23 Heat of formation + Delta-G solvation = 16.184249 kcal Electronic energy + Delta-G solvation = -21708.456070 eV Core-core repulsion = 18561.946713 eV Total energy + Delta-G solvation = -3146.509356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.99957 -38.52729 -35.83451 -35.15900 -33.07552 -31.56346 -29.98277 -28.55794 -28.02984 -27.66280 -24.33216 -22.65528 -22.41137 -21.12269 -20.35352 -18.86077 -18.11027 -17.07736 -16.47575 -15.78898 -15.00068 -14.82139 -14.55842 -14.25404 -13.93744 -13.79799 -13.48388 -13.35493 -13.09590 -12.73637 -12.58461 -12.51935 -12.20664 -11.90616 -11.75060 -11.58154 -11.55415 -11.25319 -10.90076 -10.72545 -10.42645 -10.30333 -9.96702 -9.71129 -9.65985 -9.54367 -9.32638 -9.25997 -8.44590 -8.33061 -6.57462 -5.76579 -3.25167 1.23912 3.22099 3.26931 3.38775 3.44231 3.45379 4.25949 4.50123 4.55155 4.62824 4.99538 5.04669 5.16879 5.19064 5.20492 5.26354 5.42576 5.45431 5.53614 5.56138 5.67183 5.72280 5.91112 5.94365 6.10100 6.10881 6.14037 6.29590 6.31098 6.37668 6.48089 6.63916 6.68533 6.68981 6.74139 6.87917 6.99498 7.41098 7.63162 7.72815 7.80083 8.32683 8.50817 9.24584 9.86463 10.44462 11.30504 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035202 B = 0.003293 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.215421 B = 8501.368441 C = 8692.316299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.035 4.035 3 C -0.127 4.127 4 C -0.236 4.236 5 C 0.546 3.454 6 O -0.546 6.546 7 N -0.693 5.693 8 C 0.070 3.930 9 H 0.131 0.869 10 C -0.183 4.183 11 C -0.097 4.097 12 C -0.106 4.106 13 C 0.174 3.826 14 N -0.590 5.590 15 C -0.254 4.254 16 H 0.062 0.938 17 C 0.004 3.996 18 N -0.904 5.904 19 Si 0.904 3.096 20 H -0.290 1.290 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.150 3.850 24 C -0.097 4.097 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.400 0.600 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.018 0.982 39 H 0.254 0.746 40 H 0.019 0.981 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 20.104 4.320 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.037 4.037 3 C -0.183 4.183 4 C -0.257 4.257 5 C 0.336 3.664 6 O -0.426 6.426 7 N -0.342 5.342 8 C -0.036 4.036 9 H 0.149 0.851 10 C -0.222 4.222 11 C -0.098 4.098 12 C -0.145 4.145 13 C 0.048 3.952 14 N -0.312 5.312 15 C -0.384 4.384 16 H 0.080 0.920 17 C -0.195 4.195 18 N -0.548 5.548 19 Si 0.734 3.266 20 H -0.216 1.216 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.023 3.977 24 C -0.137 4.137 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.143 0.857 32 H 0.235 0.765 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.109 0.891 38 H 0.036 0.964 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.604 19.908 4.326 20.436 hybrid contribution 0.812 -0.618 -0.667 1.219 sum -0.792 19.290 3.659 19.650 Atomic orbital electron populations 1.21077 0.90761 1.00953 1.04460 1.22563 0.96954 0.94395 0.89803 1.21027 1.00309 0.94159 1.02848 1.22342 1.00209 0.92085 1.11018 1.18515 0.87398 0.84085 0.76424 1.90755 1.13746 1.87263 1.50861 1.45312 1.09845 1.05481 1.73534 1.21874 0.96890 0.79911 1.04885 0.85147 1.23521 1.03278 1.02460 0.92946 1.21947 0.97238 0.95262 0.95383 1.21884 0.96620 0.96700 0.99320 1.20775 0.84841 0.92150 0.97438 1.43943 1.09062 1.38741 1.39438 1.19141 1.24293 0.91733 1.03245 0.91990 1.25159 1.00633 0.96150 0.97531 1.69971 1.41077 1.13175 1.30584 0.86351 0.78045 0.79012 0.83205 1.21608 1.20975 1.20890 1.20939 0.93187 0.87552 0.96016 1.21700 0.92840 0.99301 0.99818 0.89959 0.93055 0.89841 0.90629 0.91218 0.90597 0.85750 0.76494 0.88424 0.89161 0.92224 0.93087 0.89054 0.96418 0.93544 0.96301 0.92774 0.91810 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.34 36.00 0.30 -0.90 16 2 C -0.04 -0.33 6.11 -101.17 -0.62 -0.95 16 3 C -0.13 -0.79 10.07 36.01 0.36 -0.43 16 4 C -0.24 -2.48 9.67 -37.81 -0.37 -2.85 16 5 C 0.55 7.56 7.73 -12.66 -0.10 7.46 16 6 O -0.55 -9.13 12.67 5.27 0.07 -9.06 16 7 N -0.69 -9.20 5.34 -55.07 -0.29 -9.50 16 8 C 0.07 1.07 6.14 -68.01 -0.42 0.65 16 9 H 0.13 2.16 7.40 -51.93 -0.38 1.77 16 10 C -0.18 -2.75 9.87 -26.80 -0.26 -3.02 16 11 C -0.10 -1.64 1.94 -154.50 -0.30 -1.94 16 12 C -0.11 -2.06 5.83 -26.45 -0.15 -2.21 16 13 C 0.17 4.15 5.35 -3.68 -0.02 4.13 16 14 N -0.59 -14.71 2.92 -171.98 -0.50 -15.22 16 15 C -0.25 -6.96 9.54 -15.06 -0.14 -7.11 16 16 H 0.06 1.67 7.86 -52.48 -0.41 1.25 16 17 C 0.00 0.11 5.01 -17.43 -0.09 0.02 16 18 N -0.90 -26.18 11.08 55.49 0.62 -25.56 16 19 Si 0.90 21.68 29.57 -169.99 -5.03 16.65 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.15 3.10 6.54 -3.44 -0.02 3.08 16 24 C -0.10 -1.64 5.39 -26.22 -0.14 -1.78 16 25 H 0.08 0.97 7.26 -51.93 -0.38 0.60 16 26 H 0.05 0.41 7.70 -51.92 -0.40 0.01 16 27 H 0.08 1.01 7.20 -51.93 -0.37 0.64 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.37 7.70 -51.93 -0.40 -0.03 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.40 4.48 7.10 -40.82 -0.29 4.19 16 33 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 37 H 0.09 2.45 5.96 -51.93 -0.31 2.14 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 1.09 7.92 -51.93 -0.41 0.68 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.04 0.62 6.75 -51.93 -0.35 0.27 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -30.87 342.91 -9.01 -39.88 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.07 Total: 3.49 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.97 Total: -5.86 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.18 Total: -50.28 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.87 -9.01 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713090322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.066 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds