Wall clock time and date at job start Tue Mar 31 2020 00:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50701 * 119.99974 * 2 1 4 4 C 1.32994 * 119.99690 * 180.02562 * 2 1 3 5 5 C 1.47097 * 120.00007 * 354.01538 * 4 2 1 6 6 O 1.21614 * 120.00166 * 5.69588 * 5 4 2 7 7 N 1.34783 * 120.00131 * 185.69330 * 5 4 2 8 8 C 1.46496 * 119.99983 * 180.02562 * 7 5 4 9 9 H 1.08994 * 115.55352 * 9.31961 * 8 7 5 10 10 C 1.53029 * 117.52121 * 223.58983 * 8 7 5 11 11 C 1.52819 * 117.49785 * 155.00190 * 8 7 5 12 12 C 1.53183 * 117.71165 * 215.12744 * 11 8 7 13 13 C 1.53351 * 108.76895 * 201.11466 * 12 11 8 14 14 N 1.46831 * 108.81802 * 308.69489 * 13 12 11 15 15 C 1.36938 * 120.38249 * 236.87250 * 14 13 12 16 16 H 1.08003 * 120.00234 * 148.32294 * 15 14 13 17 17 C 1.38811 * 119.99932 * 328.32534 * 15 14 13 18 18 N 1.31625 * 119.99688 * 347.72766 * 17 15 14 19 19 Si 1.86793 * 120.00182 * 167.73297 * 17 15 14 20 20 H 1.48503 * 109.47002 * 179.97438 * 19 17 15 21 21 H 1.48507 * 109.46691 * 299.99424 * 19 17 15 22 22 H 1.48496 * 109.47477 * 59.99544 * 19 17 15 23 23 C 1.46846 * 119.24006 * 57.14418 * 14 13 12 24 24 C 1.53179 * 117.71573 * 359.88831 * 11 8 7 25 25 H 1.09006 * 109.47266 * 243.70947 * 1 2 3 26 26 H 1.09011 * 109.46859 * 3.70448 * 1 2 3 27 27 H 1.08993 * 109.47522 * 123.70114 * 1 2 3 28 28 H 1.09001 * 109.47132 * 239.99940 * 3 2 1 29 29 H 1.08999 * 109.47386 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.46896 * 120.00772 * 3 2 1 31 31 H 1.08004 * 119.99732 * 174.01831 * 4 2 1 32 32 H 0.97002 * 119.99367 * 0.02562 * 7 5 4 33 33 H 1.09003 * 117.50330 * 145.05836 * 10 8 7 34 34 H 1.09005 * 117.50828 * 0.02562 * 10 8 7 35 35 H 1.08999 * 109.59210 * 81.33348 * 12 11 8 36 36 H 1.08998 * 109.70770 * 320.96940 * 12 11 8 37 37 H 1.08998 * 109.58273 * 188.88550 * 13 12 11 38 38 H 1.09005 * 109.57638 * 68.49143 * 13 12 11 39 39 H 0.96998 * 119.99669 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.57791 * 62.64940 * 23 14 13 41 41 H 1.09003 * 109.58035 * 183.05762 * 23 14 13 42 42 H 1.09002 * 109.58731 * 278.66590 * 24 11 8 43 43 H 1.08997 * 109.58950 * 39.10139 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4423 -2.4222 0.1317 6 8 0.2262 -2.4274 0.1373 7 7 2.1216 -3.5807 0.2467 8 6 1.3950 -4.8460 0.3778 9 1 0.3187 -4.7890 0.2161 10 6 1.9014 -5.8476 1.4181 11 6 2.1097 -6.1199 -0.0714 12 6 1.2636 -7.2209 -0.7182 13 6 2.0165 -8.5522 -0.6053 14 7 3.3813 -8.3691 -1.1148 15 6 3.8502 -9.1519 -2.1359 16 1 4.5672 -8.7518 -2.8376 17 6 3.4040 -10.4595 -2.2692 18 7 2.7265 -11.0263 -1.2933 19 14 3.7651 -11.4148 -3.8332 20 1 3.1854 -12.7778 -3.7257 21 1 3.1630 -10.7103 -4.9936 22 1 5.2344 -11.5160 -4.0235 23 6 4.2399 -7.3411 -0.5128 24 6 3.5302 -5.9814 -0.6277 25 1 -0.3634 -0.4552 0.9214 26 1 -0.3633 1.0256 -0.0664 27 1 -0.3634 -0.5702 -0.8549 28 1 2.8871 1.3629 -0.8900 29 1 1.5522 2.1336 0.0005 30 1 2.8872 1.3628 0.8899 31 1 3.2475 -1.1543 -0.0980 32 1 3.0916 -3.5765 0.2426 33 1 1.1581 -6.4497 1.9407 34 1 2.7751 -5.5651 2.0054 35 1 1.0964 -6.9838 -1.7689 36 1 0.3057 -7.2982 -0.2041 37 1 1.5050 -9.3123 -1.1957 38 1 2.0550 -8.8626 0.4389 39 1 2.4151 -11.9402 -1.3863 40 1 4.4126 -7.5783 0.5370 41 1 5.1918 -7.3041 -1.0424 42 1 3.4851 -5.6774 -1.6735 43 1 4.0773 -5.2354 -0.0513 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713090322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:23 Heat of formation + Delta-G solvation = -1.934592 kcal Electronic energy + Delta-G solvation = -21709.241761 eV Core-core repulsion = 18561.946713 eV Total energy + Delta-G solvation = -3147.295048 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.15066 -39.84164 -37.25420 -36.20889 -34.46907 -33.33473 -31.65182 -30.07115 -28.79456 -28.54773 -26.24017 -24.08786 -23.68927 -22.72304 -21.62443 -19.93955 -19.57747 -18.32479 -17.98051 -17.10426 -16.66257 -16.00779 -15.79596 -15.42171 -15.24616 -15.12239 -14.91616 -14.63356 -14.47031 -14.13748 -13.77561 -13.37746 -13.30447 -13.20891 -13.06455 -12.86519 -12.63174 -12.57251 -12.50506 -12.37492 -12.28759 -12.00220 -11.81491 -11.37096 -11.25939 -10.80863 -10.57738 -10.48374 -10.11731 -9.52093 -8.57371 -7.84851 -5.36918 0.41877 1.46548 1.48889 1.55478 2.19355 2.24777 2.51274 2.98985 3.30417 3.64816 3.78047 3.82625 3.88818 3.95475 4.00169 4.13661 4.28404 4.52986 4.59600 4.62556 4.72365 4.72908 4.82239 4.84797 4.91250 4.92512 4.96687 5.02551 5.07948 5.08940 5.17310 5.20795 5.31446 5.38298 5.51999 5.55183 5.59600 5.65017 5.67206 5.78976 6.43572 6.63327 7.17588 7.30679 7.88661 8.40723 9.19288 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035202 B = 0.003293 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.215421 B = 8501.368441 C = 8692.316299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.124 4.124 4 C -0.250 4.250 5 C 0.538 3.462 6 O -0.583 6.583 7 N -0.686 5.686 8 C 0.086 3.914 9 H 0.116 0.884 10 C -0.170 4.170 11 C -0.115 4.115 12 C -0.094 4.094 13 C 0.183 3.817 14 N -0.609 5.609 15 C -0.265 4.265 16 H 0.064 0.936 17 C -0.050 4.050 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.294 1.294 21 H -0.279 1.279 22 H -0.274 1.274 23 C 0.145 3.855 24 C -0.082 4.082 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.154 0.846 32 H 0.412 0.588 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.054 0.946 38 H -0.001 1.001 39 H 0.250 0.750 40 H 0.018 0.982 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 22.829 4.455 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.028 4.028 3 C -0.180 4.180 4 C -0.270 4.270 5 C 0.330 3.670 6 O -0.466 6.466 7 N -0.336 5.336 8 C -0.020 4.020 9 H 0.134 0.866 10 C -0.209 4.209 11 C -0.117 4.117 12 C -0.134 4.134 13 C 0.057 3.943 14 N -0.332 5.332 15 C -0.395 4.395 16 H 0.082 0.918 17 C -0.245 4.245 18 N -0.581 5.581 19 Si 0.796 3.204 20 H -0.220 1.220 21 H -0.205 1.205 22 H -0.200 1.200 23 C 0.020 3.980 24 C -0.121 4.121 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.171 0.829 32 H 0.250 0.750 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.017 0.983 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.201 22.670 4.464 23.106 hybrid contribution 0.351 -1.402 -0.678 1.597 sum 0.151 21.268 3.785 21.603 Atomic orbital electron populations 1.21037 0.91962 1.01871 1.02512 1.22900 0.96451 0.95807 0.87687 1.21093 1.00545 0.92292 1.04066 1.22418 1.01438 0.90495 1.12674 1.19161 0.87190 0.85144 0.75509 1.90748 1.15490 1.87816 1.52551 1.45236 1.10396 1.04615 1.73340 1.21574 0.96179 0.80215 1.04050 0.86623 1.23595 1.03840 1.01587 0.91837 1.21799 0.97075 0.95751 0.97070 1.21635 0.97203 0.95402 0.99140 1.20514 0.85001 0.93517 0.95298 1.44208 1.10023 1.39466 1.39530 1.19483 1.23900 0.92171 1.03993 0.91813 1.25912 1.01035 0.97191 1.00392 1.70138 1.42437 1.13135 1.32402 0.85339 0.78110 0.77267 0.79697 1.22009 1.20509 1.19951 1.21102 0.93166 0.88296 0.95473 1.21519 0.92710 0.97754 1.00143 0.91823 0.90569 0.92104 0.89297 0.90091 0.89166 0.82879 0.75008 0.88325 0.87265 0.93569 0.91735 0.92725 0.98323 0.94100 0.96421 0.92632 0.92631 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.34 71.23 0.59 -1.71 16 2 C -0.03 -0.44 6.11 -17.62 -0.11 -0.54 16 3 C -0.12 -1.06 10.07 71.24 0.72 -0.35 16 4 C -0.25 -4.60 9.67 23.43 0.23 -4.37 16 5 C 0.54 14.08 7.73 86.57 0.67 14.75 16 6 O -0.58 -19.41 12.67 -4.07 -0.05 -19.46 16 7 N -0.69 -16.64 5.34 -446.39 -2.38 -19.02 16 8 C 0.09 2.50 6.14 44.94 0.28 2.77 16 9 H 0.12 3.77 7.40 -2.39 -0.02 3.75 16 10 C -0.17 -4.75 9.87 30.55 0.30 -4.45 16 11 C -0.12 -3.76 1.94 -52.17 -0.10 -3.86 16 12 C -0.09 -3.72 5.83 30.77 0.18 -3.54 16 13 C 0.18 8.99 5.35 86.43 0.46 9.45 16 14 N -0.61 -30.83 2.92 -698.04 -2.04 -32.87 16 15 C -0.27 -14.71 9.54 84.03 0.80 -13.91 16 16 H 0.06 3.44 7.86 -2.91 -0.02 3.41 16 17 C -0.05 -2.82 5.01 84.86 0.42 -2.39 16 18 N -0.94 -55.90 11.08 21.65 0.24 -55.66 16 19 Si 0.97 45.24 29.57 68.60 2.03 47.27 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 23 C 0.15 5.88 6.54 86.58 0.57 6.45 16 24 C -0.08 -2.61 5.39 30.92 0.17 -2.45 16 25 H 0.06 1.49 7.26 -2.38 -0.02 1.48 16 26 H 0.08 1.06 7.70 -2.38 -0.02 1.04 16 27 H 0.06 1.48 7.20 -2.39 -0.02 1.46 16 28 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 0.54 7.70 -2.39 -0.02 0.52 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.41 7.80 7.10 -92.71 -0.66 7.14 16 33 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.11 2.66 8.14 -2.38 -0.02 2.65 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 2.31 8.11 -2.39 -0.02 2.30 16 37 H 0.05 3.07 5.96 -2.39 -0.01 3.06 16 38 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 39 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 41 H 0.06 2.19 7.92 -2.39 -0.02 2.17 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.08 2.02 6.75 -2.39 -0.02 2.01 16 Total: -1.00 -69.08 342.91 3.30 -65.78 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.33 Total: 18.10 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.18 Total: -4.15 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -4.18 Total: -107.55 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.05 Total: -19.46 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.08 3.30 -65.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713090322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.847 kcal (2) G-P(sol) polarization free energy of solvation -69.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds