Wall clock time and date at job start Tue Mar 31 2020 00:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50698 * 119.99713 * 2 1 4 4 C 1.32994 * 120.00180 * 179.97438 * 2 1 3 5 5 C 1.47105 * 119.99636 * 351.97786 * 4 2 1 6 6 O 1.21612 * 120.00029 * 354.05220 * 5 4 2 7 7 N 1.34781 * 119.99434 * 173.76777 * 5 4 2 8 8 C 1.46505 * 119.99550 * 180.27494 * 7 5 4 9 9 H 1.08998 * 115.55025 * 350.69010 * 8 7 5 10 10 C 1.53032 * 117.49785 * 136.41858 * 8 7 5 11 11 C 1.52814 * 117.50007 * 204.99943 * 8 7 5 12 12 C 1.53184 * 117.70961 * 144.90107 * 11 8 7 13 13 C 1.53357 * 108.76775 * 158.89348 * 12 11 8 14 14 N 1.46836 * 108.81663 * 51.30354 * 13 12 11 15 15 C 1.36942 * 120.37869 * 123.12298 * 14 13 12 16 16 H 1.08000 * 120.00537 * 320.12150 * 15 14 13 17 17 C 1.38819 * 119.99612 * 140.12487 * 15 14 13 18 18 N 1.31621 * 119.99640 * 169.42103 * 17 15 14 19 19 Si 1.86797 * 120.00116 * 349.41641 * 17 15 14 20 20 H 1.48500 * 109.46855 * 89.73477 * 19 17 15 21 21 H 1.48500 * 109.47201 * 209.73249 * 19 17 15 22 22 H 1.48504 * 109.47112 * 329.73483 * 19 17 15 23 23 C 1.46842 * 119.23888 * 303.10289 * 14 13 12 24 24 C 1.53188 * 117.71328 * 0.14800 * 11 8 7 25 25 H 1.08997 * 109.47146 * 264.92849 * 1 2 3 26 26 H 1.08999 * 109.47112 * 24.92884 * 1 2 3 27 27 H 1.08998 * 109.46980 * 144.92619 * 1 2 3 28 28 H 1.09001 * 109.46962 * 269.99516 * 3 2 1 29 29 H 1.08992 * 109.47395 * 29.99920 * 3 2 1 30 30 H 1.09001 * 109.47090 * 150.00075 * 3 2 1 31 31 H 1.07989 * 120.00219 * 171.97671 * 4 2 1 32 32 H 0.96994 * 120.00134 * 0.27833 * 7 5 4 33 33 H 1.08999 * 117.50245 * 214.95209 * 10 8 7 34 34 H 1.09000 * 117.50468 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.59078 * 278.67003 * 12 11 8 36 36 H 1.08997 * 109.58836 * 39.10660 * 12 11 8 37 37 H 1.09001 * 109.57603 * 291.50941 * 13 12 11 38 38 H 1.08996 * 109.58103 * 171.10738 * 13 12 11 39 39 H 0.97004 * 119.99645 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.58191 * 297.11192 * 23 14 13 41 41 H 1.09000 * 109.58296 * 176.70203 * 23 14 13 42 42 H 1.09005 * 109.58702 * 320.89439 * 24 11 8 43 43 H 1.08996 * 109.59147 * 81.33036 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4473 -2.4194 0.1789 6 8 0.2581 -2.4093 0.4335 7 7 2.1000 -3.5920 0.0544 8 6 1.3769 -4.8546 0.2261 9 1 0.3591 -4.7655 0.6058 10 6 1.6620 -5.9742 -0.7774 11 6 2.1857 -6.0782 0.6547 12 6 1.5095 -7.0879 1.5875 13 6 2.2368 -8.4328 1.4691 14 7 3.6766 -8.2105 1.6525 15 6 4.3611 -8.8781 2.6329 16 1 3.9079 -9.0279 3.6017 17 6 5.6376 -9.3621 2.3814 18 7 6.3763 -9.8158 3.3718 19 14 6.3069 -9.3698 0.6374 20 1 7.0038 -8.0862 0.3691 21 1 7.2632 -10.4947 0.4791 22 1 5.1856 -9.5343 -0.3224 23 6 4.3741 -7.2644 0.7724 24 6 3.6903 -5.8956 0.8768 25 1 -0.3633 -0.0908 1.0236 26 1 -0.3633 0.9319 -0.4331 27 1 -0.3633 -0.8410 -0.5905 28 1 2.4422 1.6197 -1.0277 29 1 1.6714 2.0647 0.5138 30 1 3.2129 1.1748 0.5138 31 1 3.2440 -1.1564 -0.1300 32 1 3.0484 -3.6000 -0.1488 33 1 0.8316 -6.6221 -1.0581 34 1 2.3872 -5.7712 -1.5655 35 1 1.5669 -6.7308 2.6158 36 1 0.4657 -7.2102 1.2986 37 1 2.0560 -8.8602 0.4828 38 1 1.8716 -9.1144 2.2373 39 1 7.2684 -10.1538 3.1961 40 1 4.3255 -7.6193 -0.2571 41 1 5.4155 -7.1770 1.0820 42 1 4.0934 -5.2268 0.1162 43 1 3.8652 -5.4744 1.8667 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713090323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:27 Heat of formation + Delta-G solvation = 19.814643 kcal Electronic energy + Delta-G solvation = -21823.658356 eV Core-core repulsion = 18677.306425 eV Total energy + Delta-G solvation = -3146.351931 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.11935 -38.72954 -36.00479 -35.28435 -33.17472 -31.69929 -30.51841 -28.89823 -28.13108 -27.75245 -24.16259 -23.02654 -22.63794 -21.33349 -20.44184 -18.99165 -18.30233 -17.13512 -16.63061 -15.86732 -15.24768 -15.06455 -14.53410 -14.33864 -14.10195 -13.94659 -13.75475 -13.73022 -12.98817 -12.83561 -12.59405 -12.57368 -12.43522 -12.03560 -11.97763 -11.87160 -11.76505 -11.68856 -11.10947 -10.79239 -10.58444 -10.36440 -9.96851 -9.78015 -9.68707 -9.57883 -9.44995 -9.32809 -8.65981 -8.41398 -6.75377 -5.95746 -3.46109 1.19093 3.15879 3.17466 3.29581 3.45148 3.49604 4.10010 4.51208 4.52826 4.60501 4.85097 4.97615 4.98557 5.02031 5.16404 5.18907 5.20249 5.33803 5.39892 5.42018 5.52495 5.65992 5.77191 5.87957 5.89840 5.94130 6.00326 6.08187 6.18331 6.27905 6.33369 6.35512 6.39996 6.45045 6.57961 6.64784 6.71378 6.75982 6.97448 7.54835 8.09169 8.24997 8.39545 8.97546 9.70634 10.14723 11.19962 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028498 B = 0.003728 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.306357 B = 7508.413617 C = 7932.506395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.033 4.033 3 C -0.127 4.127 4 C -0.236 4.236 5 C 0.548 3.452 6 O -0.545 6.545 7 N -0.694 5.694 8 C 0.076 3.924 9 H 0.133 0.867 10 C -0.185 4.185 11 C -0.103 4.103 12 C -0.098 4.098 13 C 0.152 3.848 14 N -0.605 5.605 15 C -0.264 4.264 16 H 0.080 0.920 17 C 0.030 3.970 18 N -0.913 5.913 19 Si 0.892 3.108 20 H -0.287 1.287 21 H -0.303 1.303 22 H -0.268 1.268 23 C 0.132 3.868 24 C -0.098 4.098 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.401 0.599 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.263 0.737 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 18.164 -9.487 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.035 4.035 3 C -0.184 4.184 4 C -0.257 4.257 5 C 0.338 3.662 6 O -0.425 6.425 7 N -0.343 5.343 8 C -0.030 4.030 9 H 0.150 0.850 10 C -0.224 4.224 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.026 3.974 14 N -0.329 5.329 15 C -0.393 4.393 16 H 0.097 0.903 17 C -0.170 4.170 18 N -0.555 5.555 19 Si 0.722 3.278 20 H -0.215 1.215 21 H -0.231 1.231 22 H -0.193 1.193 23 C 0.006 3.994 24 C -0.137 4.137 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.143 0.857 32 H 0.236 0.764 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.232 18.069 -9.238 22.295 hybrid contribution 1.206 -0.058 -1.093 1.629 sum -8.026 18.011 -10.331 22.260 Atomic orbital electron populations 1.21147 0.90906 1.02343 1.03661 1.22554 0.96902 0.94410 0.89630 1.21009 1.00183 0.94387 1.02821 1.22371 1.00350 0.92059 1.10935 1.18518 0.86855 0.84054 0.76772 1.90736 1.15310 1.87606 1.48841 1.45329 1.12767 1.04779 1.71427 1.21819 0.97675 0.79361 1.04108 0.84951 1.23556 1.03683 1.01647 0.93472 1.21920 0.95722 0.96951 0.95829 1.21678 0.97372 0.96336 0.98383 1.20920 0.84509 0.93277 0.98689 1.44208 1.04350 1.46121 1.38205 1.18881 0.98794 1.29674 0.91981 0.90261 1.25590 0.97623 0.96764 0.97027 1.69774 1.10125 1.44791 1.30800 0.86760 0.78250 0.76261 0.86504 1.21460 1.23109 1.19320 1.21308 0.96206 0.88103 0.93779 1.21626 0.91853 0.99279 1.00945 0.90257 0.92757 0.89300 0.90496 0.90852 0.91013 0.85668 0.76363 0.88322 0.89009 0.91464 0.92482 0.95883 0.91663 0.92718 0.95677 0.91265 0.93416 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 8.46 36.01 0.30 -0.93 16 2 C -0.03 -0.31 6.10 -101.17 -0.62 -0.93 16 3 C -0.13 -0.79 10.02 36.00 0.36 -0.43 16 4 C -0.24 -2.44 9.62 -37.80 -0.36 -2.81 16 5 C 0.55 7.31 7.61 -12.66 -0.10 7.21 16 6 O -0.54 -8.73 12.87 5.27 0.07 -8.66 16 7 N -0.69 -8.81 5.34 -55.06 -0.29 -9.10 16 8 C 0.08 1.07 6.14 -68.01 -0.42 0.65 16 9 H 0.13 1.98 7.40 -51.93 -0.38 1.59 16 10 C -0.19 -2.50 9.86 -26.80 -0.26 -2.77 16 11 C -0.10 -1.59 1.94 -154.49 -0.30 -1.89 16 12 C -0.10 -1.62 5.83 -26.45 -0.15 -1.78 16 13 C 0.15 3.00 6.51 -3.67 -0.02 2.97 16 14 N -0.61 -14.25 2.56 -172.25 -0.44 -14.69 16 15 C -0.26 -7.38 9.94 -15.05 -0.15 -7.53 16 16 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 17 C 0.03 0.85 5.33 -17.43 -0.09 0.76 16 18 N -0.91 -27.98 13.97 55.49 0.78 -27.20 16 19 Si 0.89 22.35 24.43 -169.99 -4.15 18.20 16 20 H -0.29 -6.90 6.72 56.52 0.38 -6.52 16 21 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 22 H -0.27 -6.61 6.59 56.52 0.37 -6.23 16 23 C 0.13 2.79 4.21 -3.67 -0.02 2.78 16 24 C -0.10 -1.66 5.37 -26.45 -0.14 -1.80 16 25 H 0.08 0.85 8.03 -51.93 -0.42 0.44 16 26 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.09 1.07 6.17 -51.93 -0.32 0.75 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.40 4.39 7.10 -40.82 -0.29 4.10 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.29 7.92 -51.93 -0.41 0.88 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.03 0.53 7.02 -51.93 -0.36 0.17 16 41 H 0.07 1.60 5.11 -51.93 -0.27 1.33 16 42 H 0.05 0.67 6.75 -51.93 -0.35 0.32 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 337.71 15.07 5.09 5.09 Total: -1.00 -31.98 337.71 -7.98 -39.96 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.05 Total: 2.90 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.97 Total: -6.50 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.04 Total: -50.99 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.66 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.15 Total: 18.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.98 -7.98 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713090323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.778 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds