Wall clock time and date at job start Tue Mar 31 2020 00:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50698 * 119.99713 * 2 1 4 4 C 1.32994 * 120.00180 * 179.97438 * 2 1 3 5 5 C 1.47105 * 119.99636 * 351.97786 * 4 2 1 6 6 O 1.21612 * 120.00029 * 354.05220 * 5 4 2 7 7 N 1.34781 * 119.99434 * 173.76777 * 5 4 2 8 8 C 1.46505 * 119.99550 * 180.27494 * 7 5 4 9 9 H 1.08998 * 115.55025 * 350.69010 * 8 7 5 10 10 C 1.53032 * 117.49785 * 136.41858 * 8 7 5 11 11 C 1.52814 * 117.50007 * 204.99943 * 8 7 5 12 12 C 1.53184 * 117.70961 * 144.90107 * 11 8 7 13 13 C 1.53357 * 108.76775 * 158.89348 * 12 11 8 14 14 N 1.46836 * 108.81663 * 51.30354 * 13 12 11 15 15 C 1.36942 * 120.37869 * 123.12298 * 14 13 12 16 16 H 1.08000 * 120.00537 * 320.12150 * 15 14 13 17 17 C 1.38819 * 119.99612 * 140.12487 * 15 14 13 18 18 N 1.31621 * 119.99640 * 169.42103 * 17 15 14 19 19 Si 1.86797 * 120.00116 * 349.41641 * 17 15 14 20 20 H 1.48500 * 109.46855 * 89.73477 * 19 17 15 21 21 H 1.48500 * 109.47201 * 209.73249 * 19 17 15 22 22 H 1.48504 * 109.47112 * 329.73483 * 19 17 15 23 23 C 1.46842 * 119.23888 * 303.10289 * 14 13 12 24 24 C 1.53188 * 117.71328 * 0.14800 * 11 8 7 25 25 H 1.08997 * 109.47146 * 264.92849 * 1 2 3 26 26 H 1.08999 * 109.47112 * 24.92884 * 1 2 3 27 27 H 1.08998 * 109.46980 * 144.92619 * 1 2 3 28 28 H 1.09001 * 109.46962 * 269.99516 * 3 2 1 29 29 H 1.08992 * 109.47395 * 29.99920 * 3 2 1 30 30 H 1.09001 * 109.47090 * 150.00075 * 3 2 1 31 31 H 1.07989 * 120.00219 * 171.97671 * 4 2 1 32 32 H 0.96994 * 120.00134 * 0.27833 * 7 5 4 33 33 H 1.08999 * 117.50245 * 214.95209 * 10 8 7 34 34 H 1.09000 * 117.50468 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.59078 * 278.67003 * 12 11 8 36 36 H 1.08997 * 109.58836 * 39.10660 * 12 11 8 37 37 H 1.09001 * 109.57603 * 291.50941 * 13 12 11 38 38 H 1.08996 * 109.58103 * 171.10738 * 13 12 11 39 39 H 0.97004 * 119.99645 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.58191 * 297.11192 * 23 14 13 41 41 H 1.09000 * 109.58296 * 176.70203 * 23 14 13 42 42 H 1.09005 * 109.58702 * 320.89439 * 24 11 8 43 43 H 1.08996 * 109.59147 * 81.33036 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4473 -2.4194 0.1789 6 8 0.2581 -2.4093 0.4335 7 7 2.1000 -3.5920 0.0544 8 6 1.3769 -4.8546 0.2261 9 1 0.3591 -4.7655 0.6058 10 6 1.6620 -5.9742 -0.7774 11 6 2.1857 -6.0782 0.6547 12 6 1.5095 -7.0879 1.5875 13 6 2.2368 -8.4328 1.4691 14 7 3.6766 -8.2105 1.6525 15 6 4.3611 -8.8781 2.6329 16 1 3.9079 -9.0279 3.6017 17 6 5.6376 -9.3621 2.3814 18 7 6.3763 -9.8158 3.3718 19 14 6.3069 -9.3698 0.6374 20 1 7.0038 -8.0862 0.3691 21 1 7.2632 -10.4947 0.4791 22 1 5.1856 -9.5343 -0.3224 23 6 4.3741 -7.2644 0.7724 24 6 3.6903 -5.8956 0.8768 25 1 -0.3633 -0.0908 1.0236 26 1 -0.3633 0.9319 -0.4331 27 1 -0.3633 -0.8410 -0.5905 28 1 2.4422 1.6197 -1.0277 29 1 1.6714 2.0647 0.5138 30 1 3.2129 1.1748 0.5138 31 1 3.2440 -1.1564 -0.1300 32 1 3.0484 -3.6000 -0.1488 33 1 0.8316 -6.6221 -1.0581 34 1 2.3872 -5.7712 -1.5655 35 1 1.5669 -6.7308 2.6158 36 1 0.4657 -7.2102 1.2986 37 1 2.0560 -8.8602 0.4828 38 1 1.8716 -9.1144 2.2373 39 1 7.2684 -10.1538 3.1961 40 1 4.3255 -7.6193 -0.2571 41 1 5.4155 -7.1770 1.0820 42 1 4.0934 -5.2268 0.1162 43 1 3.8652 -5.4744 1.8667 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713090323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:27 Heat of formation + Delta-G solvation = -0.654422 kcal Electronic energy + Delta-G solvation = -21824.545961 eV Core-core repulsion = 18677.306425 eV Total energy + Delta-G solvation = -3147.239536 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.19975 -39.95288 -37.40233 -36.22250 -34.55028 -33.55169 -32.02827 -30.40064 -28.82104 -28.56661 -26.01832 -24.50518 -23.66561 -22.87874 -21.60920 -20.10602 -19.60668 -18.38550 -18.05908 -17.27790 -16.83546 -16.05124 -15.89585 -15.57963 -15.34800 -15.24157 -14.98820 -14.59529 -14.41239 -14.28539 -14.20546 -13.62311 -13.41783 -13.34682 -13.23228 -12.99574 -12.74453 -12.58360 -12.39739 -12.36604 -12.26380 -12.12011 -11.60539 -11.45106 -11.38038 -10.82875 -10.71075 -10.55368 -10.11604 -9.53971 -8.67296 -8.17302 -5.64931 0.39890 1.30656 1.41360 1.52233 2.18508 2.23186 2.41882 2.95934 3.12309 3.34445 3.71879 3.79375 3.82450 3.93869 3.94722 4.03589 4.28468 4.38872 4.52792 4.57864 4.61715 4.69496 4.70520 4.78485 4.82653 4.86946 4.91719 4.93753 4.97165 4.99502 5.05145 5.13451 5.20204 5.22340 5.31774 5.50412 5.53321 5.59874 5.66112 5.95981 6.17001 6.60319 6.98415 7.28246 7.61573 8.07481 9.02309 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028498 B = 0.003728 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.306357 B = 7508.413617 C = 7932.506395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.025 4.025 3 C -0.125 4.125 4 C -0.253 4.253 5 C 0.540 3.460 6 O -0.580 6.580 7 N -0.690 5.690 8 C 0.086 3.914 9 H 0.122 0.878 10 C -0.165 4.165 11 C -0.122 4.122 12 C -0.089 4.089 13 C 0.148 3.852 14 N -0.620 5.620 15 C -0.256 4.256 16 H 0.038 0.962 17 C -0.030 4.030 18 N -0.962 5.962 19 Si 0.959 3.041 20 H -0.269 1.269 21 H -0.311 1.311 22 H -0.257 1.257 23 C 0.127 3.873 24 C -0.087 4.087 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.411 0.589 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.051 0.949 39 H 0.263 0.737 40 H 0.037 0.963 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.769 20.515 -12.400 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.027 4.027 3 C -0.181 4.181 4 C -0.274 4.274 5 C 0.332 3.668 6 O -0.462 6.462 7 N -0.339 5.339 8 C -0.021 4.021 9 H 0.140 0.860 10 C -0.204 4.204 11 C -0.123 4.123 12 C -0.128 4.128 13 C 0.023 3.977 14 N -0.345 5.345 15 C -0.386 4.386 16 H 0.056 0.944 17 C -0.225 4.225 18 N -0.608 5.608 19 Si 0.786 3.214 20 H -0.195 1.195 21 H -0.239 1.239 22 H -0.181 1.181 23 C 0.002 3.998 24 C -0.126 4.126 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.168 0.832 32 H 0.248 0.752 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.461 20.452 -12.177 25.614 hybrid contribution 1.147 -0.735 -0.105 1.366 sum -8.314 19.717 -12.282 24.673 Atomic orbital electron populations 1.21106 0.91821 1.02593 1.02620 1.22888 0.96587 0.95667 0.87572 1.21073 1.00235 0.92695 1.04117 1.22459 1.01428 0.90806 1.12659 1.19079 0.86636 0.85041 0.76006 1.90727 1.16887 1.88111 1.50509 1.45295 1.13218 1.04252 1.71166 1.21640 0.96850 0.79641 1.03959 0.85982 1.23650 1.03830 1.00615 0.92271 1.21783 0.94761 0.98178 0.97590 1.21521 0.98633 0.94697 0.97953 1.21046 0.82629 0.95128 0.98874 1.44338 1.05719 1.46741 1.37696 1.18756 0.98901 1.29294 0.91640 0.94434 1.26295 0.98090 0.97002 1.01090 1.69927 1.10702 1.46990 1.33138 0.85681 0.77678 0.76610 0.81381 1.19452 1.23939 1.18071 1.21355 0.95288 0.89810 0.93347 1.21450 0.92789 0.97165 1.01230 0.91510 0.90369 0.91634 0.88817 0.89806 0.90150 0.83232 0.75199 0.87013 0.87603 0.93377 0.89702 0.94411 0.93024 0.92836 0.94504 0.93469 0.89912 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.46 71.24 0.60 -1.73 16 2 C -0.03 -0.41 6.10 -17.62 -0.11 -0.52 16 3 C -0.12 -1.13 10.02 71.24 0.71 -0.41 16 4 C -0.25 -4.64 9.62 23.43 0.23 -4.41 16 5 C 0.54 13.58 7.61 86.57 0.66 14.24 16 6 O -0.58 -18.29 12.87 -4.07 -0.05 -18.34 16 7 N -0.69 -15.84 5.34 -446.36 -2.38 -18.22 16 8 C 0.09 2.18 6.14 44.94 0.28 2.46 16 9 H 0.12 3.45 7.40 -2.39 -0.02 3.43 16 10 C -0.17 -3.83 9.86 30.55 0.30 -3.53 16 11 C -0.12 -3.48 1.94 -52.17 -0.10 -3.58 16 12 C -0.09 -2.83 5.83 30.78 0.18 -2.65 16 13 C 0.15 5.74 6.51 86.44 0.56 6.30 16 14 N -0.62 -29.10 2.56 -698.89 -1.79 -30.89 16 15 C -0.26 -14.74 9.94 84.03 0.84 -13.91 16 16 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 17 C -0.03 -1.74 5.33 84.86 0.45 -1.29 16 18 N -0.96 -61.06 13.97 21.65 0.30 -60.76 16 19 Si 0.96 46.28 24.43 68.60 1.68 47.95 16 20 H -0.27 -12.04 6.72 99.48 0.67 -11.37 16 21 H -0.31 -15.27 7.11 99.48 0.71 -14.57 16 22 H -0.26 -11.75 6.59 99.48 0.66 -11.10 16 23 C 0.13 5.14 4.21 86.43 0.36 5.51 16 24 C -0.09 -2.77 5.37 30.78 0.17 -2.60 16 25 H 0.07 1.41 8.03 -2.39 -0.02 1.39 16 26 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 27 H 0.06 1.55 6.17 -2.39 -0.01 1.54 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 30 H 0.08 0.63 8.07 -2.39 -0.02 0.61 16 31 H 0.15 1.93 8.06 -2.92 -0.02 1.91 16 32 H 0.41 7.65 7.10 -92.71 -0.66 6.99 16 33 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.08 2.22 8.10 -2.39 -0.02 2.20 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 39 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 40 H 0.04 1.43 7.02 -2.38 -0.02 1.41 16 41 H 0.05 2.11 5.11 -2.39 -0.01 2.10 16 42 H 0.08 2.03 6.75 -2.38 -0.02 2.02 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -71.96 337.71 3.13 -68.83 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.25 Total: 17.55 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.13 Total: -6.12 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -3.87 Total: -109.87 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.05 Total: -18.34 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.68 Total: 47.95 kcal Total: -71.96 3.13 -68.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713090323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.178 kcal (2) G-P(sol) polarization free energy of solvation -71.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds