Wall clock time and date at job start Tue Mar 31 2020 00:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50701 * 119.99519 * 2 1 4 4 C 1.32994 * 120.00261 * 180.02562 * 2 1 3 5 5 C 1.47096 * 120.00114 * 359.97438 * 4 2 1 6 6 O 1.21622 * 119.99721 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00022 * 180.02562 * 5 4 2 8 8 C 1.46508 * 119.99757 * 179.97438 * 7 5 4 9 9 C 1.53606 * 110.01553 * 276.02446 * 8 7 5 10 10 C 1.53699 * 109.28719 * 186.67860 * 9 8 7 11 11 H 1.08995 * 112.58587 * 186.99417 * 10 9 8 12 12 C 1.54612 * 107.83310 * 311.29273 * 10 9 8 13 13 C 1.54313 * 104.84895 * 88.60731 * 12 10 9 14 14 C 1.54868 * 104.62651 * 0.08811 * 13 12 10 15 15 H 1.08994 * 112.19942 * 146.75399 * 14 13 12 16 16 C 1.53147 * 109.43011 * 155.00083 * 8 7 5 17 17 N 1.48289 * 107.27522 * 63.07001 * 10 9 8 18 18 C 1.36940 * 128.21113 * 107.43875 * 17 10 9 19 19 H 1.08001 * 120.00281 * 164.72460 * 18 17 10 20 20 C 1.38812 * 119.99618 * 344.71835 * 18 17 10 21 21 N 1.31617 * 120.00507 * 350.28707 * 20 18 17 22 22 Si 1.86800 * 119.99858 * 170.28378 * 20 18 17 23 23 H 1.48502 * 109.47126 * 60.00294 * 22 20 18 24 24 H 1.48497 * 109.47335 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47292 * 300.00568 * 22 20 18 26 26 H 1.09005 * 109.46797 * 239.99860 * 1 2 3 27 27 H 1.08997 * 109.47507 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47573 * 120.00258 * 1 2 3 29 29 H 1.09004 * 109.47154 * 270.00106 * 3 2 1 30 30 H 1.08995 * 109.47514 * 30.00366 * 3 2 1 31 31 H 1.09007 * 109.47012 * 150.00519 * 3 2 1 32 32 H 1.08002 * 119.99751 * 179.97438 * 4 2 1 33 33 H 0.96996 * 120.00428 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.39428 * 35.11771 * 8 7 5 35 35 H 1.09005 * 110.12634 * 66.26505 * 9 8 7 36 36 H 1.08998 * 108.59595 * 306.16628 * 9 8 7 37 37 H 1.08998 * 110.38428 * 207.48467 * 12 10 9 38 38 H 1.09003 * 110.37959 * 329.73406 * 12 10 9 39 39 H 1.09005 * 110.37737 * 118.87611 * 13 12 10 40 40 H 1.08995 * 110.38138 * 241.23794 * 13 12 10 41 41 H 1.08995 * 109.56831 * 54.14532 * 16 8 7 42 42 H 1.08994 * 109.67371 * 293.83500 * 16 8 7 43 43 H 0.96995 * 120.00659 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4366 -2.4257 -0.0005 6 8 0.2204 -2.4257 -0.0005 7 7 2.1105 -3.5928 -0.0005 8 6 1.3780 -4.8616 0.0001 9 6 0.9845 -5.2409 1.4356 10 6 0.3675 -6.6486 1.4378 11 1 -0.0424 -6.9245 2.4093 12 6 -0.6978 -6.7004 0.3185 13 6 0.0756 -7.1359 -0.9438 14 6 1.5385 -7.3087 -0.4659 15 1 2.0547 -8.1065 -0.9998 16 6 2.2567 -5.9574 -0.6104 17 7 1.4191 -7.5910 0.9850 18 6 2.1147 -8.5056 1.7299 19 1 2.6702 -9.2913 1.2394 20 6 2.1060 -8.4227 3.1155 21 7 1.5941 -7.3650 3.7084 22 14 2.8208 -9.8125 4.1388 23 1 4.2555 -9.9901 3.7991 24 1 2.6902 -9.4832 5.5809 25 1 2.0845 -11.0693 3.8499 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3634 1.0276 0.0005 28 1 -0.3634 -0.5139 -0.8899 29 1 2.4420 1.6199 -1.0277 30 1 1.6713 2.0648 0.5139 31 1 3.2129 1.1749 0.5138 32 1 3.2520 -1.1516 -0.0009 33 1 3.0805 -3.5928 -0.0001 34 1 0.4685 -4.7547 -0.5911 35 1 0.2623 -4.5250 1.8281 36 1 1.8813 -5.2343 2.0551 37 1 -1.4692 -7.4309 0.5620 38 1 -1.1416 -5.7157 0.1710 39 1 -0.3153 -8.0808 -1.3213 40 1 0.0140 -6.3648 -1.7116 41 1 3.2117 -5.9937 -0.0864 42 1 2.4271 -5.7456 -1.6659 43 1 1.5884 -7.3069 4.6766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713177673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:26 Heat of formation + Delta-G solvation = -1.749390 kcal Electronic energy + Delta-G solvation = -22679.007578 eV Core-core repulsion = 19531.720561 eV Total energy + Delta-G solvation = -3147.287017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -39.91721 -38.68910 -35.53864 -34.18872 -32.58719 -30.20732 -30.01926 -29.13964 -27.89948 -27.41679 -24.57793 -23.27473 -22.10834 -20.43551 -19.34412 -18.93775 -18.19041 -16.92801 -16.51876 -15.79024 -14.72574 -14.65784 -14.34175 -14.12567 -13.96439 -13.54072 -13.10780 -12.98250 -12.76329 -12.37714 -12.34708 -11.97933 -11.85208 -11.73510 -11.56322 -11.44239 -11.32326 -10.97482 -10.76448 -10.63642 -10.57700 -10.10826 -9.72116 -9.58652 -9.36967 -9.28843 -9.25498 -9.11014 -8.65013 -8.24186 -6.79820 -5.73932 -3.09018 1.49832 3.39767 3.45533 3.45961 3.60752 3.71170 4.48679 4.78205 4.82690 5.21850 5.29192 5.33974 5.41539 5.46384 5.57858 5.65938 5.69415 5.78972 5.83564 5.93064 5.95000 6.01006 6.07559 6.15322 6.26812 6.34583 6.49395 6.52001 6.57123 6.60443 6.72249 6.74917 6.83310 6.91782 7.02887 7.10314 7.29047 7.60433 7.64908 7.80675 8.01983 8.27137 8.68183 9.16018 9.78423 10.58040 11.38274 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.004584 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.809252 B = 6106.110243 C = 6592.986147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.044 4.044 3 C -0.124 4.124 4 C -0.230 4.230 5 C 0.540 3.460 6 O -0.547 6.547 7 N -0.719 5.719 8 C 0.147 3.853 9 C -0.119 4.119 10 C 0.183 3.817 11 H 0.109 0.891 12 C -0.145 4.145 13 C -0.130 4.130 14 C 0.151 3.849 15 H 0.068 0.932 16 C -0.133 4.133 17 N -0.585 5.585 18 C -0.225 4.225 19 H 0.074 0.926 20 C -0.004 4.004 21 N -0.910 5.910 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.393 0.607 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.047 0.953 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.086 12.352 -8.661 15.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.046 4.046 3 C -0.181 4.181 4 C -0.251 4.251 5 C 0.329 3.671 6 O -0.427 6.427 7 N -0.368 5.368 8 C 0.043 3.957 9 C -0.159 4.159 10 C 0.076 3.924 11 H 0.126 0.874 12 C -0.184 4.184 13 C -0.169 4.169 14 C 0.042 3.958 15 H 0.086 0.914 16 C -0.174 4.174 17 N -0.306 5.306 18 C -0.353 4.353 19 H 0.092 0.908 20 C -0.201 4.201 21 N -0.556 5.556 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 H 0.102 0.898 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.226 0.774 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.300 12.229 -8.386 14.831 hybrid contribution 1.131 -0.614 0.620 1.429 sum 1.431 11.615 -7.766 14.045 Atomic orbital electron populations 1.21013 0.90816 1.00578 1.04567 1.22516 0.96943 0.94329 0.90845 1.20992 1.00029 0.94492 1.02587 1.22483 0.99898 0.92465 1.10241 1.18497 0.87519 0.84331 0.76767 1.90749 1.13664 1.87740 1.50553 1.46221 1.09962 1.06254 1.74361 1.21313 0.94665 0.80824 0.98855 1.22439 1.01372 0.98228 0.93867 1.21461 0.86844 0.87360 0.96748 0.87372 1.22804 0.98897 0.99552 0.97115 1.22665 0.97302 0.99723 0.97248 1.21544 0.93273 0.92993 0.87986 0.91388 1.22462 0.99667 0.96967 0.98293 1.45203 1.41401 1.41705 1.02262 1.18929 1.24871 1.03549 0.87995 0.90849 1.24827 1.01159 0.97453 0.96646 1.69879 1.50033 1.27067 1.08623 0.86267 0.78730 0.81734 0.79386 1.21206 1.21682 1.21232 0.89819 0.93391 0.90046 0.90620 0.91153 0.91295 0.86077 0.77352 0.90287 0.93853 0.91047 0.92993 0.92474 0.92752 0.92691 0.91711 0.93435 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 8.33 36.00 0.30 -1.11 16 2 C -0.04 -0.51 6.11 -101.17 -0.62 -1.13 16 3 C -0.12 -1.00 9.98 36.01 0.36 -0.64 16 4 C -0.23 -2.96 9.63 -37.81 -0.36 -3.32 16 5 C 0.54 8.95 7.70 -12.67 -0.10 8.85 16 6 O -0.55 -10.60 12.73 5.26 0.07 -10.53 16 7 N -0.72 -11.76 5.10 -54.60 -0.28 -12.04 16 8 C 0.15 2.76 2.10 -67.54 -0.14 2.62 16 9 C -0.12 -2.65 5.13 -26.05 -0.13 -2.78 16 10 C 0.18 4.33 3.13 -65.73 -0.21 4.13 16 11 H 0.11 2.93 6.37 -51.93 -0.33 2.60 16 12 C -0.14 -2.91 5.98 -25.20 -0.15 -3.06 16 13 C -0.13 -2.39 6.00 -25.06 -0.15 -2.54 16 14 C 0.15 3.05 4.28 -65.59 -0.28 2.77 16 15 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 16 C -0.13 -2.43 5.13 -26.29 -0.13 -2.57 16 17 N -0.58 -14.36 2.81 -152.61 -0.43 -14.79 16 18 C -0.23 -6.07 10.37 -15.06 -0.16 -6.23 16 19 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 20 C 0.00 -0.10 5.42 -17.43 -0.09 -0.19 16 21 N -0.91 -25.87 10.61 55.49 0.59 -25.28 16 22 Si 0.91 21.68 29.56 -169.99 -5.03 16.65 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 26 H 0.08 1.22 7.22 -51.93 -0.37 0.84 16 27 H 0.05 0.47 7.94 -51.93 -0.41 0.06 16 28 H 0.08 1.13 7.22 -51.93 -0.37 0.75 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.49 8.05 -51.93 -0.42 0.08 16 31 H 0.07 0.50 8.07 -51.92 -0.42 0.08 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.39 5.49 8.58 -40.82 -0.35 5.14 16 34 H 0.08 1.56 5.05 -51.93 -0.26 1.30 16 35 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.81 7.99 -51.93 -0.41 1.39 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.11 7.10 -51.93 -0.37 0.74 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.91 7.08 -51.93 -0.37 0.55 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -30.10 333.31 -8.95 -39.05 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.02 Total: 7.13 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.87 Total: -5.22 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.12 Total: -52.10 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.10 -8.95 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713177673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.296 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds