Wall clock time and date at job start Tue Mar 31 2020 00:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50701 * 119.99519 * 2 1 4 4 C 1.32994 * 120.00261 * 180.02562 * 2 1 3 5 5 C 1.47096 * 120.00114 * 359.97438 * 4 2 1 6 6 O 1.21622 * 119.99721 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00022 * 180.02562 * 5 4 2 8 8 C 1.46508 * 119.99757 * 179.97438 * 7 5 4 9 9 C 1.53606 * 110.01553 * 276.02446 * 8 7 5 10 10 C 1.53699 * 109.28719 * 186.67860 * 9 8 7 11 11 H 1.08995 * 112.58587 * 186.99417 * 10 9 8 12 12 C 1.54612 * 107.83310 * 311.29273 * 10 9 8 13 13 C 1.54313 * 104.84895 * 88.60731 * 12 10 9 14 14 C 1.54868 * 104.62651 * 0.08811 * 13 12 10 15 15 H 1.08994 * 112.19942 * 146.75399 * 14 13 12 16 16 C 1.53147 * 109.43011 * 155.00083 * 8 7 5 17 17 N 1.48289 * 107.27522 * 63.07001 * 10 9 8 18 18 C 1.36940 * 128.21113 * 107.43875 * 17 10 9 19 19 H 1.08001 * 120.00281 * 164.72460 * 18 17 10 20 20 C 1.38812 * 119.99618 * 344.71835 * 18 17 10 21 21 N 1.31617 * 120.00507 * 350.28707 * 20 18 17 22 22 Si 1.86800 * 119.99858 * 170.28378 * 20 18 17 23 23 H 1.48502 * 109.47126 * 60.00294 * 22 20 18 24 24 H 1.48497 * 109.47335 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47292 * 300.00568 * 22 20 18 26 26 H 1.09005 * 109.46797 * 239.99860 * 1 2 3 27 27 H 1.08997 * 109.47507 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47573 * 120.00258 * 1 2 3 29 29 H 1.09004 * 109.47154 * 270.00106 * 3 2 1 30 30 H 1.08995 * 109.47514 * 30.00366 * 3 2 1 31 31 H 1.09007 * 109.47012 * 150.00519 * 3 2 1 32 32 H 1.08002 * 119.99751 * 179.97438 * 4 2 1 33 33 H 0.96996 * 120.00428 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.39428 * 35.11771 * 8 7 5 35 35 H 1.09005 * 110.12634 * 66.26505 * 9 8 7 36 36 H 1.08998 * 108.59595 * 306.16628 * 9 8 7 37 37 H 1.08998 * 110.38428 * 207.48467 * 12 10 9 38 38 H 1.09003 * 110.37959 * 329.73406 * 12 10 9 39 39 H 1.09005 * 110.37737 * 118.87611 * 13 12 10 40 40 H 1.08995 * 110.38138 * 241.23794 * 13 12 10 41 41 H 1.08995 * 109.56831 * 54.14532 * 16 8 7 42 42 H 1.08994 * 109.67371 * 293.83500 * 16 8 7 43 43 H 0.96995 * 120.00659 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4366 -2.4257 -0.0005 6 8 0.2204 -2.4257 -0.0005 7 7 2.1105 -3.5928 -0.0005 8 6 1.3780 -4.8616 0.0001 9 6 0.9845 -5.2409 1.4356 10 6 0.3675 -6.6486 1.4378 11 1 -0.0424 -6.9245 2.4093 12 6 -0.6978 -6.7004 0.3185 13 6 0.0756 -7.1359 -0.9438 14 6 1.5385 -7.3087 -0.4659 15 1 2.0547 -8.1065 -0.9998 16 6 2.2567 -5.9574 -0.6104 17 7 1.4191 -7.5910 0.9850 18 6 2.1147 -8.5056 1.7299 19 1 2.6702 -9.2913 1.2394 20 6 2.1060 -8.4227 3.1155 21 7 1.5941 -7.3650 3.7084 22 14 2.8208 -9.8125 4.1388 23 1 4.2555 -9.9901 3.7991 24 1 2.6902 -9.4832 5.5809 25 1 2.0845 -11.0693 3.8499 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3634 1.0276 0.0005 28 1 -0.3634 -0.5139 -0.8899 29 1 2.4420 1.6199 -1.0277 30 1 1.6713 2.0648 0.5139 31 1 3.2129 1.1749 0.5138 32 1 3.2520 -1.1516 -0.0009 33 1 3.0805 -3.5928 -0.0001 34 1 0.4685 -4.7547 -0.5911 35 1 0.2623 -4.5250 1.8281 36 1 1.8813 -5.2343 2.0551 37 1 -1.4692 -7.4309 0.5620 38 1 -1.1416 -5.7157 0.1710 39 1 -0.3153 -8.0808 -1.3213 40 1 0.0140 -6.3648 -1.7116 41 1 3.2117 -5.9937 -0.0864 42 1 2.4271 -5.7456 -1.6659 43 1 1.5884 -7.3069 4.6766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713177673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:25 Heat of formation + Delta-G solvation = -19.775420 kcal Electronic energy + Delta-G solvation = -22679.789246 eV Core-core repulsion = 19531.720561 eV Total energy + Delta-G solvation = -3148.068685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.42184 -40.14959 -36.61967 -35.61376 -34.50630 -31.94114 -31.50817 -30.98982 -28.71719 -28.51170 -26.46618 -24.92569 -23.64911 -21.85557 -20.96970 -20.51740 -19.58788 -18.52810 -17.91099 -17.27953 -16.61885 -16.03795 -15.77343 -15.49446 -15.15157 -14.72275 -14.51849 -14.43624 -14.38305 -13.76461 -13.61867 -13.29818 -13.22002 -13.13241 -13.10262 -12.82818 -12.65748 -12.53546 -12.44298 -12.38035 -12.26592 -11.97583 -11.39539 -11.31930 -11.12845 -10.97252 -10.72464 -10.46178 -10.17100 -9.67870 -8.76558 -7.81058 -5.16683 0.47752 1.47797 1.50373 1.56242 2.35793 2.45897 2.52471 3.36802 3.57312 3.84936 3.96338 3.97518 4.10722 4.27175 4.32316 4.37383 4.41606 4.48331 4.59211 4.61438 4.72534 4.75178 4.82542 4.90045 4.93823 4.99816 5.06350 5.12324 5.15024 5.18304 5.23101 5.28510 5.32684 5.55676 5.56085 5.56826 5.66331 5.74672 5.78205 5.85774 6.28357 6.74784 7.10246 7.40604 7.78285 8.59303 9.29942 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.004584 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.809252 B = 6106.110243 C = 6592.986147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.031 4.031 3 C -0.121 4.121 4 C -0.249 4.249 5 C 0.531 3.469 6 O -0.582 6.582 7 N -0.716 5.716 8 C 0.160 3.840 9 C -0.102 4.102 10 C 0.177 3.823 11 H 0.063 0.937 12 C -0.137 4.137 13 C -0.119 4.119 14 C 0.142 3.858 15 H 0.079 0.921 16 C -0.122 4.122 17 N -0.605 5.605 18 C -0.232 4.232 19 H 0.079 0.921 20 C -0.059 4.059 21 N -0.938 5.938 22 Si 0.970 3.030 23 H -0.277 1.277 24 H -0.299 1.299 25 H -0.282 1.282 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.406 0.594 34 H 0.076 0.924 35 H 0.023 0.977 36 H 0.033 0.967 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.085 0.915 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 13.494 -10.833 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.033 4.033 3 C -0.177 4.177 4 C -0.269 4.269 5 C 0.323 3.677 6 O -0.465 6.465 7 N -0.365 5.365 8 C 0.056 3.944 9 C -0.142 4.142 10 C 0.069 3.931 11 H 0.081 0.919 12 C -0.176 4.176 13 C -0.157 4.157 14 C 0.035 3.965 15 H 0.097 0.903 16 C -0.162 4.162 17 N -0.327 5.327 18 C -0.361 4.361 19 H 0.097 0.903 20 C -0.253 4.253 21 N -0.586 5.586 22 Si 0.799 3.201 23 H -0.203 1.203 24 H -0.226 1.226 25 H -0.208 1.208 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.167 0.833 33 H 0.242 0.758 34 H 0.094 0.906 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.475 13.377 -10.600 17.131 hybrid contribution 0.711 -0.907 1.288 1.728 sum 2.185 12.470 -9.312 15.715 Atomic orbital electron populations 1.20971 0.91925 1.01735 1.02467 1.22901 0.96517 0.95781 0.88116 1.21069 1.00178 0.92385 1.04108 1.22512 1.01108 0.90780 1.12537 1.19195 0.87373 0.85443 0.75710 1.90735 1.15329 1.88292 1.52159 1.46081 1.10586 1.05477 1.74398 1.20975 0.95182 0.82338 0.95928 1.22183 0.98932 0.97270 0.95861 1.21314 0.87951 0.87809 0.96008 0.91858 1.22681 0.97991 1.00016 0.96869 1.22602 0.95353 1.01244 0.96543 1.21831 0.94923 0.94286 0.85490 0.90264 1.22320 0.98292 0.95393 1.00212 1.45382 1.41594 1.41552 1.04160 1.19285 1.24248 1.04028 0.88559 0.90318 1.25559 1.02348 0.99532 0.97815 1.70096 1.51719 1.28789 1.07957 0.85285 0.78372 0.79157 0.77263 1.20267 1.22581 1.20792 0.92503 0.90513 0.91716 0.88706 0.89847 0.90086 0.83269 0.75830 0.90575 0.95801 0.94804 0.93039 0.91905 0.91391 0.90114 0.93074 0.89685 0.94700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.75 8.33 71.24 0.59 -2.16 16 2 C -0.03 -0.66 6.11 -17.62 -0.11 -0.76 16 3 C -0.12 -1.49 9.98 71.24 0.71 -0.78 16 4 C -0.25 -5.97 9.63 23.43 0.23 -5.74 16 5 C 0.53 17.38 7.70 86.57 0.67 18.05 16 6 O -0.58 -22.89 12.73 -4.10 -0.05 -22.94 16 7 N -0.72 -22.88 5.10 -444.92 -2.27 -25.15 16 8 C 0.16 5.95 2.10 45.24 0.10 6.04 16 9 C -0.10 -4.72 5.13 31.03 0.16 -4.57 16 10 C 0.18 8.64 3.13 45.43 0.14 8.78 16 11 H 0.06 3.65 6.37 -2.39 -0.02 3.64 16 12 C -0.14 -5.47 5.98 31.59 0.19 -5.28 16 13 C -0.12 -4.07 6.00 31.68 0.19 -3.88 16 14 C 0.14 5.50 4.28 45.52 0.20 5.69 16 15 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 16 C -0.12 -4.22 5.13 30.88 0.16 -4.06 16 17 N -0.61 -29.99 2.81 -636.75 -1.79 -31.78 16 18 C -0.23 -12.66 10.37 84.03 0.87 -11.79 16 19 H 0.08 4.11 7.85 -2.91 -0.02 4.08 16 20 C -0.06 -3.28 5.42 84.86 0.46 -2.82 16 21 N -0.94 -55.82 10.61 21.65 0.23 -55.59 16 22 Si 0.97 45.49 29.56 68.60 2.03 47.52 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H 0.06 1.69 7.22 -2.38 -0.02 1.67 16 27 H 0.08 1.35 7.94 -2.39 -0.02 1.33 16 28 H 0.06 1.78 7.22 -2.39 -0.02 1.76 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 0.85 8.05 -2.39 -0.02 0.83 16 31 H 0.08 0.86 8.07 -2.38 -0.02 0.84 16 32 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.41 10.81 8.58 -92.71 -0.80 10.02 16 34 H 0.08 2.92 5.05 -2.39 -0.01 2.91 16 35 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.03 1.79 7.99 -2.39 -0.02 1.77 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.06 2.43 7.10 -2.39 -0.02 2.41 16 39 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.08 2.39 7.08 -2.39 -0.02 2.38 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -68.50 333.31 2.89 -65.61 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.20 Total: 25.61 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 4.55 Total: -3.27 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -3.83 Total: -112.52 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.50 2.89 -65.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713177673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.839 kcal (2) G-P(sol) polarization free energy of solvation -68.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds