Wall clock time and date at job start Tue Mar 31 2020 00:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 H 1.08997 * 109.46695 * 359.71858 * 3 2 1 5 5 C 1.52995 * 109.46735 * 239.72139 * 3 2 1 6 6 C 1.53001 * 109.47178 * 65.00271 * 5 3 2 7 7 C 1.52999 * 109.47135 * 119.72114 * 3 2 1 8 8 C 1.50700 * 109.47053 * 294.99881 * 7 3 2 9 9 O 1.21281 * 120.00226 * 0.02562 * 8 7 3 10 10 N 1.34778 * 119.99882 * 180.02562 * 8 7 3 11 11 C 1.47870 * 126.94501 * 0.02562 * 10 8 7 12 12 C 1.56022 * 105.10486 * 181.98034 * 11 10 8 13 13 H 1.08998 * 116.24843 * 158.84023 * 12 11 10 14 14 C 1.57083 * 99.60542 * 32.80892 * 12 11 10 15 15 C 1.49294 * 126.94569 * 179.70970 * 10 8 7 16 16 H 1.08998 * 116.14879 * 16.72557 * 15 10 8 17 17 C 1.56018 * 104.09152 * 246.72148 * 15 10 8 18 18 N 1.49257 * 105.36302 * 288.93554 * 17 15 10 19 19 C 1.36936 * 127.74629 * 182.19055 * 18 17 15 20 20 H 1.08004 * 119.99832 * 179.51279 * 19 18 17 21 21 C 1.38806 * 120.00636 * 359.51041 * 19 18 17 22 22 N 1.31627 * 119.99660 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00531 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47402 * 59.99848 * 23 21 19 25 25 H 1.48502 * 109.47539 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47050 * 299.99915 * 23 21 19 27 27 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 28 28 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 29 29 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 30 30 H 1.09006 * 109.46751 * 185.00105 * 5 3 2 31 31 H 1.09002 * 109.47170 * 304.99657 * 5 3 2 32 32 H 1.08997 * 109.47040 * 299.99383 * 6 5 3 33 33 H 1.08992 * 109.47579 * 59.99573 * 6 5 3 34 34 H 1.09001 * 109.47203 * 179.97438 * 6 5 3 35 35 H 1.09002 * 109.47170 * 54.99861 * 7 3 2 36 36 H 1.08997 * 109.47219 * 175.00005 * 7 3 2 37 37 H 1.08999 * 110.31775 * 300.89128 * 11 10 8 38 38 H 1.09001 * 110.31325 * 63.07453 * 11 10 8 39 39 H 1.08999 * 112.36848 * 64.27018 * 14 12 11 40 40 H 1.09001 * 112.36531 * 191.71262 * 14 12 11 41 41 H 1.08992 * 110.31693 * 47.66988 * 17 15 10 42 42 H 1.09001 * 110.31585 * 169.86177 * 17 15 10 43 43 H 0.96993 * 120.00268 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 -0.0050 5 6 2.9484 1.3831 -1.2457 6 6 2.0669 1.4246 -2.4956 7 6 2.9379 1.3892 1.2527 8 6 2.0594 1.4361 2.4762 9 8 0.8527 1.4048 2.3580 10 7 2.6146 1.5128 3.7020 11 6 4.0573 1.5603 4.0228 12 6 4.1264 1.5922 5.5811 13 1 5.0682 1.2747 6.0285 14 6 2.8621 0.7228 5.9175 15 6 1.8971 1.5736 5.0098 16 1 0.8492 1.2740 4.9973 17 6 2.2167 3.0011 5.5524 18 7 3.6582 2.9642 5.9376 19 6 4.4000 3.9653 6.5056 20 1 5.4406 3.7989 6.7418 21 6 3.8145 5.1941 6.7778 22 7 2.5461 5.3969 6.4904 23 14 4.8266 6.5600 7.5519 24 1 5.9677 6.8954 6.6628 25 1 3.9751 7.7622 7.7385 26 1 5.3418 6.1084 8.8695 27 1 -0.5400 -0.9353 0.0045 28 1 -0.5400 0.9353 -0.0045 29 1 1.8500 -0.9353 0.0046 30 1 3.5591 2.2849 -1.2017 31 1 3.5960 0.5073 -1.2867 32 1 1.4562 0.5228 -2.5396 33 1 1.4193 2.3003 -2.4546 34 1 2.6973 1.4806 -3.3831 35 1 3.5852 0.5137 1.3035 36 1 3.5489 2.2908 1.2095 37 1 4.5596 0.6720 3.6398 38 1 4.5083 2.4606 3.6054 39 1 2.9621 -0.3060 5.5714 40 1 2.5914 0.7750 6.9720 41 1 2.0571 3.7465 4.7734 42 1 1.5978 3.2227 6.4219 43 1 2.1371 6.2556 6.6802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713936233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:01 Heat of formation + Delta-G solvation = 28.633078 kcal Electronic energy + Delta-G solvation = -22452.239076 eV Core-core repulsion = 19306.269541 eV Total energy + Delta-G solvation = -3145.969535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02993 -38.30196 -36.28858 -33.54062 -31.76659 -31.60501 -30.14210 -28.83642 -28.43606 -25.21750 -24.76786 -23.19404 -21.64293 -20.49929 -19.79662 -19.44083 -18.32077 -17.08581 -16.20499 -15.72792 -15.39152 -14.89115 -14.52951 -14.22466 -14.00343 -13.84926 -13.41766 -13.10146 -12.77326 -12.27277 -12.08560 -11.90405 -11.73025 -11.63753 -11.36019 -11.24320 -11.17697 -10.97196 -10.84252 -10.77939 -10.73743 -10.54197 -10.42261 -10.25915 -10.08318 -9.61666 -9.45393 -8.92107 -8.69732 -7.91995 -6.92621 -5.77166 -3.11171 2.58268 3.18299 3.37190 3.41412 3.43559 3.48517 4.41563 4.73633 4.81196 4.94652 5.07762 5.20925 5.25397 5.27604 5.38016 5.41569 5.54997 5.56438 5.58181 5.65463 5.77697 5.80460 5.85621 5.90543 5.93351 5.95959 6.09034 6.20092 6.22502 6.31319 6.35020 6.43534 6.53565 6.60699 6.73058 6.85959 7.08501 7.40004 7.47891 7.69739 8.07088 8.20214 8.72238 9.07690 9.70427 10.41302 11.35880 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024028 B = 0.004365 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.006060 B = 6412.873970 C = 6819.804466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.148 4.148 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.150 4.150 7 C -0.128 4.128 8 C 0.526 3.474 9 O -0.549 6.549 10 N -0.610 5.610 11 C 0.085 3.915 12 C 0.139 3.861 13 H 0.103 0.897 14 C -0.152 4.152 15 C 0.100 3.900 16 H 0.112 0.888 17 C 0.173 3.827 18 N -0.598 5.598 19 C -0.231 4.231 20 H 0.080 0.920 21 C -0.005 4.005 22 N -0.920 5.920 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -10.900 -11.499 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.207 4.207 7 C -0.168 4.168 8 C 0.314 3.686 9 O -0.427 6.427 10 N -0.344 5.344 11 C -0.040 4.040 12 C 0.030 3.970 13 H 0.121 0.879 14 C -0.192 4.192 15 C -0.003 4.003 16 H 0.130 0.870 17 C 0.048 3.952 18 N -0.322 5.322 19 C -0.359 4.359 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.921 -10.608 -11.567 15.722 hybrid contribution 0.588 0.828 0.480 1.123 sum 1.509 -9.780 -11.087 14.861 Atomic orbital electron populations 1.23656 0.95931 1.01119 0.99553 1.22606 0.95956 0.97004 1.01016 1.20152 0.96620 0.96970 0.92554 0.90113 1.21540 0.97864 1.01896 0.94060 1.21754 0.99827 1.02089 0.97068 1.21650 0.98570 1.03881 0.92722 1.20161 0.88681 0.76368 0.83349 1.90658 1.14779 1.51323 1.85961 1.49264 1.08289 1.71471 1.05350 1.23266 0.80884 0.99899 0.99988 1.23148 0.96024 0.87357 0.90487 0.87875 1.24216 0.97953 0.97193 0.99846 1.24334 0.96211 0.98954 0.80778 0.86985 1.22119 0.85112 0.89778 0.98152 1.45524 1.06952 1.07804 1.71929 1.18989 0.93145 0.90343 1.33408 0.90173 1.24810 0.96246 0.97795 1.01382 1.69899 1.10584 1.23730 1.52398 0.86200 0.78886 0.81528 0.79112 1.21169 1.21620 1.21118 0.89463 0.88637 0.88356 0.91809 0.91990 0.92488 0.92805 0.93084 0.89517 0.89112 0.93037 0.91200 0.91673 0.89964 0.93414 0.92785 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 13.20 29.01 0.38 -1.81 16 2 C -0.15 -1.88 6.77 -36.03 -0.24 -2.13 16 3 C -0.04 -0.56 1.82 -91.77 -0.17 -0.73 16 4 H 0.08 1.18 7.60 -51.93 -0.39 0.78 16 5 C -0.12 -1.17 5.39 -26.73 -0.14 -1.31 16 6 C -0.15 -1.41 9.73 37.16 0.36 -1.04 16 7 C -0.13 -1.75 4.45 -27.88 -0.12 -1.87 16 8 C 0.53 9.43 7.64 -10.99 -0.08 9.35 16 9 O -0.55 -11.28 14.50 5.56 0.08 -11.20 16 10 N -0.61 -11.22 2.95 -156.55 -0.46 -11.68 16 11 C 0.09 1.44 6.00 -1.67 -0.01 1.43 16 12 C 0.14 2.57 5.47 -62.55 -0.34 2.23 16 13 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 14 C -0.15 -2.60 6.84 -22.10 -0.15 -2.75 16 15 C 0.10 1.95 5.25 -62.34 -0.33 1.62 16 16 H 0.11 2.15 8.06 -51.93 -0.42 1.73 16 17 C 0.17 4.17 4.83 -0.90 0.00 4.17 16 18 N -0.60 -14.40 3.07 -155.22 -0.48 -14.87 16 19 C -0.23 -6.14 10.38 -15.06 -0.16 -6.30 16 20 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 21 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 22 N -0.92 -26.89 10.69 55.49 0.59 -26.29 16 23 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.10 1.35 7.83 -52.49 -0.41 0.94 16 29 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.54 7.38 -51.93 -0.38 0.16 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.05 1.33 7.72 -51.93 -0.40 0.92 16 42 H 0.05 1.43 7.53 -51.93 -0.39 1.04 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -30.80 343.27 -8.66 -39.46 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.44 Total: 2.15 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.11 Total: 0.63 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.34 Total: -52.84 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.80 -8.66 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713936233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.090 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds