Wall clock time and date at job start Tue Mar 31 2020 00:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 H 1.08997 * 109.46695 * 359.71858 * 3 2 1 5 5 C 1.52995 * 109.46735 * 239.72139 * 3 2 1 6 6 C 1.53001 * 109.47178 * 65.00271 * 5 3 2 7 7 C 1.52999 * 109.47135 * 119.72114 * 3 2 1 8 8 C 1.50700 * 109.47053 * 294.99881 * 7 3 2 9 9 O 1.21281 * 120.00226 * 0.02562 * 8 7 3 10 10 N 1.34778 * 119.99882 * 180.02562 * 8 7 3 11 11 C 1.47870 * 126.94501 * 0.02562 * 10 8 7 12 12 C 1.56022 * 105.10486 * 181.98034 * 11 10 8 13 13 H 1.08998 * 116.24843 * 158.84023 * 12 11 10 14 14 C 1.57083 * 99.60542 * 32.80892 * 12 11 10 15 15 C 1.49294 * 126.94569 * 179.70970 * 10 8 7 16 16 H 1.08998 * 116.14879 * 16.72557 * 15 10 8 17 17 C 1.56018 * 104.09152 * 246.72148 * 15 10 8 18 18 N 1.49257 * 105.36302 * 288.93554 * 17 15 10 19 19 C 1.36936 * 127.74629 * 182.19055 * 18 17 15 20 20 H 1.08004 * 119.99832 * 179.51279 * 19 18 17 21 21 C 1.38806 * 120.00636 * 359.51041 * 19 18 17 22 22 N 1.31627 * 119.99660 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00531 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47402 * 59.99848 * 23 21 19 25 25 H 1.48502 * 109.47539 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47050 * 299.99915 * 23 21 19 27 27 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 28 28 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 29 29 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 30 30 H 1.09006 * 109.46751 * 185.00105 * 5 3 2 31 31 H 1.09002 * 109.47170 * 304.99657 * 5 3 2 32 32 H 1.08997 * 109.47040 * 299.99383 * 6 5 3 33 33 H 1.08992 * 109.47579 * 59.99573 * 6 5 3 34 34 H 1.09001 * 109.47203 * 179.97438 * 6 5 3 35 35 H 1.09002 * 109.47170 * 54.99861 * 7 3 2 36 36 H 1.08997 * 109.47219 * 175.00005 * 7 3 2 37 37 H 1.08999 * 110.31775 * 300.89128 * 11 10 8 38 38 H 1.09001 * 110.31325 * 63.07453 * 11 10 8 39 39 H 1.08999 * 112.36848 * 64.27018 * 14 12 11 40 40 H 1.09001 * 112.36531 * 191.71262 * 14 12 11 41 41 H 1.08992 * 110.31693 * 47.66988 * 17 15 10 42 42 H 1.09001 * 110.31585 * 169.86177 * 17 15 10 43 43 H 0.96993 * 120.00268 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 -0.0050 5 6 2.9484 1.3831 -1.2457 6 6 2.0669 1.4246 -2.4956 7 6 2.9379 1.3892 1.2527 8 6 2.0594 1.4361 2.4762 9 8 0.8527 1.4048 2.3580 10 7 2.6146 1.5128 3.7020 11 6 4.0573 1.5603 4.0228 12 6 4.1264 1.5922 5.5811 13 1 5.0682 1.2747 6.0285 14 6 2.8621 0.7228 5.9175 15 6 1.8971 1.5736 5.0098 16 1 0.8492 1.2740 4.9973 17 6 2.2167 3.0011 5.5524 18 7 3.6582 2.9642 5.9376 19 6 4.4000 3.9653 6.5056 20 1 5.4406 3.7989 6.7418 21 6 3.8145 5.1941 6.7778 22 7 2.5461 5.3969 6.4904 23 14 4.8266 6.5600 7.5519 24 1 5.9677 6.8954 6.6628 25 1 3.9751 7.7622 7.7385 26 1 5.3418 6.1084 8.8695 27 1 -0.5400 -0.9353 0.0045 28 1 -0.5400 0.9353 -0.0045 29 1 1.8500 -0.9353 0.0046 30 1 3.5591 2.2849 -1.2017 31 1 3.5960 0.5073 -1.2867 32 1 1.4562 0.5228 -2.5396 33 1 1.4193 2.3003 -2.4546 34 1 2.6973 1.4806 -3.3831 35 1 3.5852 0.5137 1.3035 36 1 3.5489 2.2908 1.2095 37 1 4.5596 0.6720 3.6398 38 1 4.5083 2.4606 3.6054 39 1 2.9621 -0.3060 5.5714 40 1 2.5914 0.7750 6.9720 41 1 2.0571 3.7465 4.7734 42 1 1.5978 3.2227 6.4219 43 1 2.1371 6.2556 6.6802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713936233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:00 Heat of formation + Delta-G solvation = 11.228213 kcal Electronic energy + Delta-G solvation = -22452.993808 eV Core-core repulsion = 19306.269541 eV Total energy + Delta-G solvation = -3146.724266 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52125 -39.68286 -37.42134 -35.37652 -33.37171 -32.58295 -31.48622 -30.32830 -30.09703 -26.95833 -25.98526 -24.76951 -22.55765 -22.00682 -21.37289 -20.50055 -19.87814 -18.74111 -17.78822 -17.34141 -16.64148 -16.36385 -15.82493 -15.66609 -15.34498 -14.99898 -14.75219 -14.50475 -13.94956 -13.75529 -13.52001 -13.34868 -13.12560 -12.93787 -12.87298 -12.79182 -12.66850 -12.35001 -12.18132 -12.11737 -12.04792 -12.00681 -11.84890 -11.66390 -11.51134 -11.34234 -10.89192 -10.67267 -9.98486 -9.43935 -8.90185 -7.84645 -5.19776 1.46898 1.49869 1.55975 1.57016 1.78883 2.10197 2.49023 3.34031 3.36706 3.62209 3.83756 3.84651 3.93224 3.95132 4.05306 4.22810 4.36090 4.42597 4.45663 4.52715 4.63051 4.66204 4.71872 4.83718 4.89739 4.96331 5.00728 5.02941 5.08721 5.09394 5.15380 5.19165 5.26963 5.40294 5.44599 5.47421 5.55504 5.63433 5.84092 6.08241 6.10574 6.78299 7.00574 7.30944 7.70219 8.43389 9.27600 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024028 B = 0.004365 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.006060 B = 6412.873970 C = 6819.804466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C -0.044 4.044 4 H 0.050 0.950 5 C -0.110 4.110 6 C -0.150 4.150 7 C -0.119 4.119 8 C 0.516 3.484 9 O -0.582 6.582 10 N -0.614 5.614 11 C 0.093 3.907 12 C 0.132 3.868 13 H 0.133 0.867 14 C -0.129 4.129 15 C 0.102 3.898 16 H 0.110 0.890 17 C 0.186 3.814 18 N -0.618 5.618 19 C -0.229 4.229 20 H 0.097 0.903 21 C -0.072 4.072 22 N -0.959 5.959 23 Si 0.978 3.022 24 H -0.275 1.275 25 H -0.304 1.304 26 H -0.274 1.274 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.103 0.897 40 H 0.076 0.924 41 H -0.004 1.004 42 H 0.014 0.986 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -13.460 -12.359 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.162 4.162 3 C -0.063 4.063 4 H 0.069 0.931 5 C -0.147 4.147 6 C -0.207 4.207 7 C -0.158 4.158 8 C 0.306 3.694 9 O -0.463 6.463 10 N -0.348 5.348 11 C -0.031 4.031 12 C 0.025 3.975 13 H 0.150 0.850 14 C -0.169 4.169 15 C -0.002 4.002 16 H 0.128 0.872 17 C 0.061 3.939 18 N -0.343 5.343 19 C -0.358 4.358 20 H 0.115 0.885 21 C -0.264 4.264 22 N -0.609 5.609 23 Si 0.806 3.194 24 H -0.201 1.201 25 H -0.231 1.231 26 H -0.199 1.199 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.138 0.862 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.014 0.986 42 H 0.032 0.968 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.850 -13.218 -12.440 18.555 hybrid contribution -0.324 1.597 0.732 1.787 sum 3.526 -11.620 -11.708 16.868 Atomic orbital electron populations 1.23689 0.96521 1.00847 1.00826 1.22806 0.95801 0.97731 0.99828 1.20148 0.96493 0.96023 0.93609 0.93142 1.21511 0.97568 1.03040 0.92609 1.21752 0.99885 1.01523 0.97575 1.21686 0.98132 1.05541 0.90474 1.21034 0.88878 0.75277 0.84178 1.90649 1.16565 1.52623 1.86434 1.49382 1.08900 1.71485 1.05040 1.23178 0.80048 1.01409 0.98452 1.23581 0.97716 0.84420 0.91750 0.84958 1.24110 0.95427 0.98335 0.98987 1.24114 0.97206 0.96334 0.82513 0.87206 1.21725 0.85454 0.91655 0.95094 1.45779 1.06820 1.09948 1.71759 1.19512 0.93946 0.90825 1.31505 0.88537 1.25663 0.97218 1.00509 1.03056 1.70153 1.12518 1.23495 1.54705 0.85156 0.77305 0.78201 0.78706 1.20133 1.23061 1.19936 0.88102 0.90746 0.86192 0.91359 0.90005 0.92671 0.93901 0.91450 0.86262 0.88562 0.87949 0.93013 0.87826 0.90501 0.98575 0.96775 0.94787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.75 13.20 67.78 0.89 -3.86 16 2 C -0.14 -3.40 6.77 25.64 0.17 -3.22 16 3 C -0.04 -1.04 1.82 -11.54 -0.02 -1.06 16 4 H 0.05 1.50 7.60 -2.39 -0.02 1.48 16 5 C -0.11 -1.92 5.39 30.59 0.16 -1.75 16 6 C -0.15 -2.55 9.73 71.98 0.70 -1.85 16 7 C -0.12 -2.94 4.45 29.85 0.13 -2.80 16 8 C 0.52 17.94 7.64 87.66 0.67 18.61 16 9 O -0.58 -24.18 14.50 -3.03 -0.04 -24.22 16 10 N -0.61 -21.66 2.95 -767.60 -2.26 -23.92 16 11 C 0.09 2.85 6.00 87.16 0.52 3.37 16 12 C 0.13 4.49 5.47 46.93 0.26 4.75 16 13 H 0.13 3.77 8.14 -2.39 -0.02 3.75 16 14 C -0.13 -4.05 6.84 33.60 0.23 -3.82 16 15 C 0.10 3.97 5.25 47.06 0.25 4.22 16 16 H 0.11 4.30 8.06 -2.39 -0.02 4.28 16 17 C 0.19 9.40 4.83 86.89 0.42 9.82 16 18 N -0.62 -29.76 3.07 -645.00 -1.98 -31.75 16 19 C -0.23 -12.15 10.38 84.03 0.87 -11.28 16 20 H 0.10 4.69 7.83 -2.91 -0.02 4.66 16 21 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 22 N -0.96 -59.06 10.69 21.65 0.23 -58.82 16 23 Si 0.98 45.24 29.55 68.60 2.03 47.27 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 27 H 0.10 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.07 2.22 7.83 -2.91 -0.02 2.20 16 29 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 0.95 7.38 -2.39 -0.02 0.93 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.00 -0.24 7.72 -2.39 -0.02 -0.26 16 42 H 0.01 0.80 7.53 -2.39 -0.02 0.79 16 43 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -71.38 343.27 4.65 -66.72 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.95 Total: 17.19 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 5.73 Total: 7.53 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -4.01 Total: -114.49 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.04 Total: -24.22 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.38 4.65 -66.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713936233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.951 kcal (2) G-P(sol) polarization free energy of solvation -71.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds