Wall clock time and date at job start Tue Mar 31 2020 00:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00059 * 2 1 4 4 H 1.09009 * 109.46724 * 359.97438 * 3 2 1 5 5 C 1.52994 * 109.47235 * 119.99660 * 3 2 1 6 6 C 1.53000 * 109.47325 * 295.00410 * 5 3 2 7 7 C 1.52996 * 109.47406 * 240.00179 * 3 2 1 8 8 C 1.50702 * 109.47159 * 64.99564 * 7 3 2 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 7 3 11 11 C 1.47868 * 126.94610 * 0.30498 * 10 8 7 12 12 C 1.56022 * 105.10792 * 181.97361 * 11 10 8 13 13 H 1.08995 * 116.24991 * 158.82905 * 12 11 10 14 14 C 1.57089 * 99.60242 * 32.80543 * 12 11 10 15 15 C 1.49295 * 126.94566 * 179.97438 * 10 8 7 16 16 H 1.09000 * 116.14951 * 16.73452 * 15 10 8 17 17 C 1.56019 * 104.09610 * 246.72556 * 15 10 8 18 18 N 1.47360 * 105.14544 * 288.60727 * 17 15 10 19 19 C 1.36939 * 126.78686 * 182.06061 * 18 17 15 20 20 H 1.08003 * 119.99502 * 180.28357 * 19 18 17 21 21 C 1.38803 * 120.00205 * 0.28376 * 19 18 17 22 22 N 1.31623 * 120.00008 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00135 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47276 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47049 * 119.99831 * 23 21 19 26 26 H 1.48499 * 109.47250 * 240.00147 * 23 21 19 27 27 H 1.08001 * 119.99830 * 179.97438 * 1 2 3 28 28 H 1.07994 * 120.00292 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00001 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.46752 * 55.00356 * 5 3 2 31 31 H 1.09002 * 109.47045 * 174.99965 * 5 3 2 32 32 H 1.09001 * 109.46957 * 179.97438 * 6 5 3 33 33 H 1.08998 * 109.47268 * 299.99997 * 6 5 3 34 34 H 1.08996 * 109.47163 * 60.00144 * 6 5 3 35 35 H 1.09004 * 109.47066 * 304.99767 * 7 3 2 36 36 H 1.08994 * 109.47405 * 184.99597 * 7 3 2 37 37 H 1.09000 * 110.31281 * 300.88452 * 11 10 8 38 38 H 1.09005 * 110.31300 * 63.06788 * 11 10 8 39 39 H 1.09001 * 112.36736 * 64.27253 * 14 12 11 40 40 H 1.08997 * 112.36586 * 191.70955 * 14 12 11 41 41 H 1.09004 * 110.31174 * 47.67535 * 17 15 10 42 42 H 1.08995 * 110.31386 * 169.86011 * 17 15 10 43 43 H 0.96998 * 119.99826 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0564 1.4307 2.4953 7 6 2.9431 1.3862 -1.2492 8 6 2.0698 1.4301 -2.4766 9 8 0.8626 1.3999 -2.3633 10 7 2.6300 1.5089 -3.6998 11 6 4.0740 1.5549 -4.0148 12 6 4.1475 1.6943 -5.5670 13 1 5.0763 2.0964 -5.9715 14 6 2.8492 2.5430 -5.8156 15 6 1.9182 1.5607 -5.0112 16 1 0.8589 1.8144 -4.9730 17 6 2.2971 0.2143 -5.7026 18 7 3.7163 0.3577 -6.0728 19 6 4.4854 -0.5562 -6.7423 20 1 5.5219 -0.3381 -6.9538 21 6 3.9331 -1.7629 -7.1493 22 7 2.6699 -2.0285 -6.8921 23 14 4.9826 -3.0099 -8.0620 24 1 6.3579 -2.4743 -8.2255 25 1 5.0327 -4.2760 -7.2877 26 1 4.3913 -3.2704 -9.3991 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 3.5906 0.5105 1.2951 31 1 3.5540 2.2879 1.2055 32 1 2.6831 1.4880 3.3853 33 1 1.4089 2.3063 2.4494 34 1 1.4456 0.5290 2.5390 35 1 3.5906 0.5106 -1.2951 36 1 3.5539 2.2879 -1.2056 37 1 4.5387 2.4163 -3.5349 38 1 4.5608 0.6338 -3.6941 39 1 2.9063 3.5316 -5.3600 40 1 2.5829 2.5942 -6.8713 41 1 2.1668 -0.6168 -5.0094 42 1 1.6896 0.0630 -6.5947 43 1 2.2841 -2.8718 -7.1761 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713936234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:04 Heat of formation + Delta-G solvation = 28.713808 kcal Electronic energy + Delta-G solvation = -22514.743019 eV Core-core repulsion = 19368.776985 eV Total energy + Delta-G solvation = -3145.966034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.06325 -38.32885 -36.28418 -33.60870 -31.73981 -31.59369 -30.13817 -28.82233 -28.48336 -25.22367 -24.76715 -23.19082 -21.62142 -20.49152 -19.81581 -19.38579 -18.32403 -17.09940 -16.20960 -15.71754 -15.40192 -14.89525 -14.54869 -14.18506 -13.98852 -13.78602 -13.49035 -13.11843 -12.72162 -12.26777 -12.11008 -11.89009 -11.75443 -11.60544 -11.36420 -11.26374 -11.17084 -10.95778 -10.85353 -10.79037 -10.72216 -10.55647 -10.38996 -10.22697 -10.05668 -9.65142 -9.42150 -8.87110 -8.68819 -7.91272 -6.92644 -5.77063 -3.12039 2.65915 3.18566 3.36245 3.41260 3.44456 3.49025 4.41283 4.73951 4.82574 4.94835 5.08211 5.20853 5.25480 5.29336 5.38355 5.46000 5.55703 5.58705 5.62624 5.66080 5.75603 5.79390 5.87751 5.89433 5.93712 5.95685 6.11940 6.21386 6.21877 6.30943 6.37056 6.43804 6.53994 6.61141 6.73561 6.94545 7.14547 7.43807 7.51803 7.72978 8.10524 8.20615 8.72631 9.10668 9.70964 10.40052 11.34616 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.004536 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.149940 B = 6171.400709 C = 6520.788591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.148 4.148 3 C -0.042 4.042 4 H 0.079 0.921 5 C -0.116 4.116 6 C -0.150 4.150 7 C -0.129 4.129 8 C 0.525 3.475 9 O -0.548 6.548 10 N -0.610 5.610 11 C 0.085 3.915 12 C 0.140 3.860 13 H 0.105 0.895 14 C -0.152 4.152 15 C 0.098 3.902 16 H 0.111 0.889 17 C 0.176 3.824 18 N -0.597 5.597 19 C -0.232 4.232 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.290 1.290 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 8.948 12.583 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C -0.061 4.061 4 H 0.097 0.903 5 C -0.154 4.154 6 C -0.207 4.207 7 C -0.169 4.169 8 C 0.314 3.686 9 O -0.427 6.427 10 N -0.344 5.344 11 C -0.041 4.041 12 C 0.031 3.969 13 H 0.123 0.877 14 C -0.192 4.192 15 C -0.004 4.004 16 H 0.129 0.871 17 C 0.051 3.949 18 N -0.321 5.321 19 C -0.360 4.360 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.743 3.257 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.217 1.217 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.719 8.651 12.615 15.314 hybrid contribution 0.595 -0.922 -0.558 1.231 sum 1.313 7.730 12.057 14.382 Atomic orbital electron populations 1.23630 0.95900 1.01076 0.99619 1.22617 0.96014 0.97089 1.00905 1.20138 0.96489 0.96975 0.92512 0.90303 1.21542 0.97883 1.01862 0.94080 1.21754 0.99793 1.02102 0.97076 1.21657 0.98628 1.03855 0.92735 1.20160 0.88641 0.76388 0.83390 1.90659 1.14719 1.51220 1.86098 1.49266 1.08230 1.71531 1.05350 1.23255 0.80979 1.00138 0.99707 1.23162 0.96039 0.87781 0.89906 0.87677 1.24220 0.97992 0.96696 1.00300 1.24379 0.96343 0.98744 0.80955 0.87071 1.21803 0.85170 0.90772 0.97154 1.45122 1.07883 1.13639 1.65467 1.19097 0.93198 0.95092 1.28591 0.90122 1.24823 0.96337 0.98015 1.01090 1.69942 1.11566 1.24183 1.50837 0.86049 0.79175 0.81341 0.79179 1.20449 1.21791 1.21725 0.89357 0.88798 0.88186 0.91857 0.91969 0.93097 0.92906 0.92388 0.89212 0.89440 0.92984 0.91262 0.91724 0.89937 0.93633 0.92761 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 13.22 29.01 0.38 -1.98 16 2 C -0.15 -2.08 6.76 -36.03 -0.24 -2.32 16 3 C -0.04 -0.54 1.82 -91.78 -0.17 -0.70 16 4 H 0.08 1.08 7.60 -51.92 -0.39 0.69 16 5 C -0.12 -1.16 5.39 -26.73 -0.14 -1.30 16 6 C -0.15 -1.39 9.73 37.16 0.36 -1.02 16 7 C -0.13 -1.76 4.45 -27.88 -0.12 -1.88 16 8 C 0.53 9.47 7.64 -10.98 -0.08 9.38 16 9 O -0.55 -11.33 14.52 5.55 0.08 -11.25 16 10 N -0.61 -11.26 2.95 -156.55 -0.46 -11.72 16 11 C 0.08 1.43 6.00 -1.67 -0.01 1.42 16 12 C 0.14 2.59 5.53 -62.55 -0.35 2.24 16 13 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 14 C -0.15 -2.60 6.84 -22.09 -0.15 -2.75 16 15 C 0.10 1.94 5.25 -62.34 -0.33 1.61 16 16 H 0.11 2.15 8.06 -51.93 -0.42 1.74 16 17 C 0.18 4.28 4.74 -1.96 -0.01 4.27 16 18 N -0.60 -14.38 3.01 -156.75 -0.47 -14.85 16 19 C -0.23 -6.16 10.37 -15.06 -0.16 -6.32 16 20 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 21 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -26.88 10.53 55.49 0.58 -26.30 16 23 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.09 1.36 7.83 -52.49 -0.41 0.95 16 29 H 0.10 1.38 8.06 -52.49 -0.42 0.95 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.57 7.38 -51.93 -0.38 0.18 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.05 1.28 7.68 -51.93 -0.40 0.88 16 42 H 0.05 1.46 7.42 -51.93 -0.39 1.07 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 342.89 15.07 5.17 5.17 Total: -1.00 -30.93 342.89 -8.67 -39.60 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.43 Total: 2.31 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.11 Total: 0.38 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.35 Total: -52.87 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.93 -8.67 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713936234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.310 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds