Wall clock time and date at job start Tue Mar 31 2020 00:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00059 * 2 1 4 4 H 1.09009 * 109.46724 * 359.97438 * 3 2 1 5 5 C 1.52994 * 109.47235 * 119.99660 * 3 2 1 6 6 C 1.53000 * 109.47325 * 295.00410 * 5 3 2 7 7 C 1.52996 * 109.47406 * 240.00179 * 3 2 1 8 8 C 1.50702 * 109.47159 * 64.99564 * 7 3 2 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 7 3 11 11 C 1.47868 * 126.94610 * 0.30498 * 10 8 7 12 12 C 1.56022 * 105.10792 * 181.97361 * 11 10 8 13 13 H 1.08995 * 116.24991 * 158.82905 * 12 11 10 14 14 C 1.57089 * 99.60242 * 32.80543 * 12 11 10 15 15 C 1.49295 * 126.94566 * 179.97438 * 10 8 7 16 16 H 1.09000 * 116.14951 * 16.73452 * 15 10 8 17 17 C 1.56019 * 104.09610 * 246.72556 * 15 10 8 18 18 N 1.47360 * 105.14544 * 288.60727 * 17 15 10 19 19 C 1.36939 * 126.78686 * 182.06061 * 18 17 15 20 20 H 1.08003 * 119.99502 * 180.28357 * 19 18 17 21 21 C 1.38803 * 120.00205 * 0.28376 * 19 18 17 22 22 N 1.31623 * 120.00008 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00135 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47276 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47049 * 119.99831 * 23 21 19 26 26 H 1.48499 * 109.47250 * 240.00147 * 23 21 19 27 27 H 1.08001 * 119.99830 * 179.97438 * 1 2 3 28 28 H 1.07994 * 120.00292 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00001 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.46752 * 55.00356 * 5 3 2 31 31 H 1.09002 * 109.47045 * 174.99965 * 5 3 2 32 32 H 1.09001 * 109.46957 * 179.97438 * 6 5 3 33 33 H 1.08998 * 109.47268 * 299.99997 * 6 5 3 34 34 H 1.08996 * 109.47163 * 60.00144 * 6 5 3 35 35 H 1.09004 * 109.47066 * 304.99767 * 7 3 2 36 36 H 1.08994 * 109.47405 * 184.99597 * 7 3 2 37 37 H 1.09000 * 110.31281 * 300.88452 * 11 10 8 38 38 H 1.09005 * 110.31300 * 63.06788 * 11 10 8 39 39 H 1.09001 * 112.36736 * 64.27253 * 14 12 11 40 40 H 1.08997 * 112.36586 * 191.70955 * 14 12 11 41 41 H 1.09004 * 110.31174 * 47.67535 * 17 15 10 42 42 H 1.08995 * 110.31386 * 169.86011 * 17 15 10 43 43 H 0.96998 * 119.99826 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0564 1.4307 2.4953 7 6 2.9431 1.3862 -1.2492 8 6 2.0698 1.4301 -2.4766 9 8 0.8626 1.3999 -2.3633 10 7 2.6300 1.5089 -3.6998 11 6 4.0740 1.5549 -4.0148 12 6 4.1475 1.6943 -5.5670 13 1 5.0763 2.0964 -5.9715 14 6 2.8492 2.5430 -5.8156 15 6 1.9182 1.5607 -5.0112 16 1 0.8589 1.8144 -4.9730 17 6 2.2971 0.2143 -5.7026 18 7 3.7163 0.3577 -6.0728 19 6 4.4854 -0.5562 -6.7423 20 1 5.5219 -0.3381 -6.9538 21 6 3.9331 -1.7629 -7.1493 22 7 2.6699 -2.0285 -6.8921 23 14 4.9826 -3.0099 -8.0620 24 1 6.3579 -2.4743 -8.2255 25 1 5.0327 -4.2760 -7.2877 26 1 4.3913 -3.2704 -9.3991 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 3.5906 0.5105 1.2951 31 1 3.5540 2.2879 1.2055 32 1 2.6831 1.4880 3.3853 33 1 1.4089 2.3063 2.4494 34 1 1.4456 0.5290 2.5390 35 1 3.5906 0.5106 -1.2951 36 1 3.5539 2.2879 -1.2056 37 1 4.5387 2.4163 -3.5349 38 1 4.5608 0.6338 -3.6941 39 1 2.9063 3.5316 -5.3600 40 1 2.5829 2.5942 -6.8713 41 1 2.1668 -0.6168 -5.0094 42 1 1.6896 0.0630 -6.5947 43 1 2.2841 -2.8718 -7.1761 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713936234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:03 Heat of formation + Delta-G solvation = 11.211854 kcal Electronic energy + Delta-G solvation = -22515.501960 eV Core-core repulsion = 19368.776985 eV Total energy + Delta-G solvation = -3146.724976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56300 -39.71728 -37.43172 -35.43872 -33.38457 -32.60060 -31.48446 -30.33162 -30.13090 -26.97113 -25.98407 -24.76093 -22.56104 -22.01305 -21.38758 -20.51229 -19.89405 -18.75601 -17.78718 -17.35447 -16.66977 -16.36491 -15.82825 -15.67595 -15.39862 -14.90334 -14.79894 -14.57465 -13.91655 -13.78315 -13.51732 -13.35098 -13.13592 -12.93370 -12.90329 -12.76941 -12.73066 -12.35176 -12.17087 -12.05757 -12.03697 -11.98110 -11.85671 -11.65768 -11.53229 -11.35875 -10.89662 -10.67306 -10.01658 -9.43791 -8.90489 -7.84404 -5.20751 1.46597 1.46965 1.53146 1.57386 1.78810 2.10964 2.48335 3.33493 3.39202 3.63838 3.81523 3.87397 3.92942 3.94328 4.06074 4.23281 4.36292 4.38918 4.46451 4.54151 4.62133 4.70152 4.70763 4.80701 4.89755 4.97753 5.00503 5.03445 5.07560 5.09707 5.16181 5.19692 5.27620 5.41377 5.46100 5.48206 5.57457 5.65984 5.83242 6.03583 6.10720 6.78799 7.03718 7.31340 7.71669 8.41751 9.26476 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.004536 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.149940 B = 6171.400709 C = 6520.788591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 C -0.039 4.039 4 H 0.068 0.932 5 C -0.110 4.110 6 C -0.150 4.150 7 C -0.119 4.119 8 C 0.515 3.485 9 O -0.582 6.582 10 N -0.615 5.615 11 C 0.093 3.907 12 C 0.133 3.867 13 H 0.136 0.864 14 C -0.129 4.129 15 C 0.100 3.900 16 H 0.108 0.892 17 C 0.191 3.809 18 N -0.617 5.617 19 C -0.229 4.229 20 H 0.097 0.903 21 C -0.073 4.073 22 N -0.959 5.959 23 Si 0.977 3.023 24 H -0.257 1.257 25 H -0.300 1.300 26 H -0.297 1.297 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.051 0.949 39 H 0.103 0.897 40 H 0.076 0.924 41 H -0.007 1.007 42 H 0.013 0.987 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.192 11.309 13.712 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.170 4.170 3 C -0.058 4.058 4 H 0.086 0.914 5 C -0.147 4.147 6 C -0.207 4.207 7 C -0.159 4.159 8 C 0.306 3.694 9 O -0.463 6.463 10 N -0.348 5.348 11 C -0.032 4.032 12 C 0.027 3.973 13 H 0.154 0.846 14 C -0.169 4.169 15 C -0.004 4.004 16 H 0.126 0.874 17 C 0.064 3.936 18 N -0.341 5.341 19 C -0.357 4.357 20 H 0.115 0.885 21 C -0.265 4.265 22 N -0.608 5.608 23 Si 0.806 3.194 24 H -0.180 1.180 25 H -0.228 1.228 26 H -0.225 1.225 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.140 0.860 37 H 0.122 0.878 38 H 0.069 0.931 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.011 0.989 42 H 0.031 0.969 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.555 11.066 13.764 18.015 hybrid contribution -0.292 -1.629 -0.894 1.881 sum 3.263 9.437 12.870 16.289 Atomic orbital electron populations 1.23676 0.96347 1.00988 1.00660 1.22852 0.96088 0.98079 1.00019 1.20148 0.96537 0.95497 0.93611 0.91391 1.21514 0.97551 1.03071 0.92564 1.21752 0.99875 1.01556 0.97545 1.21702 0.98130 1.05627 0.90431 1.21047 0.88841 0.75248 0.84273 1.90647 1.16515 1.52485 1.86616 1.49386 1.08877 1.71596 1.04971 1.23178 0.79991 1.01477 0.98512 1.23610 0.97808 0.85048 0.90850 0.84632 1.24114 0.95504 0.97459 0.99790 1.24151 0.97191 0.96752 0.82286 0.87379 1.21371 0.85624 0.91943 0.94626 1.45389 1.07633 1.15705 1.65401 1.19601 0.93968 0.95241 1.26925 0.88528 1.25672 0.97403 1.00404 1.03008 1.70192 1.13549 1.24131 1.52947 0.85023 0.78654 0.78575 0.77185 1.18033 1.22775 1.22488 0.89163 0.89340 0.88187 0.91345 0.89983 0.91489 0.92966 0.93491 0.88774 0.85998 0.87801 0.93053 0.87827 0.90522 0.98909 0.96891 0.94824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.27 13.22 67.78 0.90 -4.38 16 2 C -0.15 -4.23 6.76 25.65 0.17 -4.06 16 3 C -0.04 -0.92 1.82 -11.54 -0.02 -0.94 16 4 H 0.07 1.77 7.60 -2.38 -0.02 1.75 16 5 C -0.11 -1.85 5.39 30.59 0.16 -1.69 16 6 C -0.15 -2.45 9.73 71.98 0.70 -1.75 16 7 C -0.12 -2.92 4.45 29.85 0.13 -2.79 16 8 C 0.52 17.89 7.64 87.66 0.67 18.56 16 9 O -0.58 -24.12 14.52 -3.04 -0.04 -24.16 16 10 N -0.61 -21.67 2.95 -767.59 -2.26 -23.93 16 11 C 0.09 2.81 6.00 87.16 0.52 3.33 16 12 C 0.13 4.51 5.53 46.94 0.26 4.77 16 13 H 0.14 3.80 8.14 -2.39 -0.02 3.78 16 14 C -0.13 -4.05 6.84 33.60 0.23 -3.82 16 15 C 0.10 3.91 5.25 47.06 0.25 4.15 16 16 H 0.11 4.27 8.06 -2.39 -0.02 4.25 16 17 C 0.19 9.67 4.74 87.26 0.41 10.08 16 18 N -0.62 -29.63 3.01 -649.84 -1.95 -31.58 16 19 C -0.23 -12.09 10.37 84.03 0.87 -11.22 16 20 H 0.10 4.70 7.83 -2.91 -0.02 4.67 16 21 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 22 N -0.96 -59.05 10.53 21.65 0.23 -58.83 16 23 Si 0.98 45.31 29.55 68.60 2.03 47.33 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H 0.09 2.52 8.06 -2.91 -0.02 2.49 16 28 H 0.09 2.65 7.83 -2.91 -0.02 2.63 16 29 H 0.10 2.74 8.06 -2.91 -0.02 2.71 16 30 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.86 7.38 -2.39 -0.02 0.84 16 35 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.10 2.17 8.14 -2.39 -0.02 2.16 16 38 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 41 H -0.01 -0.44 7.68 -2.38 -0.02 -0.46 16 42 H 0.01 0.75 7.42 -2.39 -0.02 0.73 16 43 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -71.56 342.89 4.68 -66.88 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.95 Total: 17.66 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 5.73 Total: 6.62 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -3.99 Total: -114.33 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.04 Total: -24.16 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.56 4.68 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713936234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.094 kcal (2) G-P(sol) polarization free energy of solvation -71.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds