Wall clock time and date at job start Tue Mar 31 2020 00:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52991 * 109.47129 * 2 1 4 4 C 1.47196 * 109.46942 * 120.00565 * 2 1 3 5 5 C 2.64595 * 109.47051 * 120.00368 * 2 1 3 6 6 C 4.07798 * 109.47073 * 120.00253 * 2 1 3 7 7 O 1.21616 * 120.00158 * 165.65654 * 6 5 4 8 8 N 1.34781 * 120.00155 * 345.65299 * 6 5 4 9 9 C 1.46499 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47391 * 325.00213 * 9 8 6 11 11 C 1.53000 * 109.46840 * 85.00543 * 9 8 6 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46963 * 299.99499 * 12 11 9 14 14 H 1.09002 * 109.47067 * 300.00341 * 13 12 11 15 15 N 1.46496 * 109.47313 * 180.02562 * 13 12 11 16 16 C 1.36933 * 120.00258 * 85.00379 * 15 13 12 17 17 H 1.07997 * 120.00195 * 359.97438 * 16 15 13 18 18 C 1.38814 * 120.00104 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00032 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99990 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47333 * 90.00214 * 20 18 16 22 22 H 1.48503 * 109.46896 * 210.00182 * 20 18 16 23 23 H 1.48500 * 109.47061 * 329.99866 * 20 18 16 24 24 C 1.52997 * 109.47092 * 60.00194 * 13 12 11 25 25 C 1.53002 * 109.46799 * 205.00309 * 9 8 6 26 26 H 1.08992 * 109.46873 * 59.99838 * 1 2 3 27 27 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46567 * 299.99775 * 1 2 3 29 29 H 1.09004 * 109.46567 * 240.00225 * 2 1 3 30 30 H 1.09002 * 109.47054 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47130 * 300.00036 * 3 2 1 32 32 H 1.08994 * 109.47509 * 60.00142 * 3 2 1 33 33 H 0.97002 * 119.99716 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47194 * 299.99493 * 11 9 8 35 35 H 1.08992 * 109.47399 * 59.99666 * 11 9 8 36 36 H 1.09000 * 109.47437 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.47508 * 59.99571 * 12 11 9 38 38 H 0.97007 * 119.99693 * 264.99991 * 15 13 12 39 39 H 0.97001 * 120.00297 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.47375 * 180.02562 * 24 13 12 41 41 H 1.09002 * 109.47497 * 59.99850 * 24 13 12 42 42 H 1.09002 * 109.47075 * 299.99543 * 25 9 8 43 43 H 1.08996 * 109.47407 * 60.00500 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0207 -0.6940 1.2018 5 6 2.4120 -1.2475 2.1603 6 6 2.8894 -1.9225 3.3296 7 8 4.0482 -1.7940 3.6755 8 7 2.0544 -2.7003 4.0468 9 6 2.5429 -3.3913 5.2427 10 1 3.5781 -3.6960 5.0889 11 6 2.4619 -2.4488 6.4451 12 6 2.9727 -3.1702 7.6939 13 6 2.1112 -4.4071 7.9565 14 1 1.0760 -4.1027 8.1106 15 7 2.5999 -5.0976 9.1526 16 6 2.1765 -4.7013 10.3930 17 1 1.4827 -3.8793 10.4897 18 6 2.6400 -5.3553 11.5264 19 7 2.2335 -4.9740 12.7187 20 14 3.8406 -6.7765 11.3592 21 1 5.2312 -6.2565 11.3939 22 1 3.6400 -7.7285 12.4812 23 1 3.6051 -7.4745 10.0698 24 6 2.1921 -5.3496 6.7541 25 6 1.6809 -4.6279 5.5049 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.1302 -2.8030 3.7708 34 1 3.0760 -1.5678 6.2583 35 1 1.4268 -2.1441 6.5989 36 1 2.9146 -2.4990 8.5507 37 1 4.0080 -3.4746 7.5399 38 1 3.2233 -5.8357 9.0657 39 1 2.5570 -5.4312 13.5107 40 1 1.5780 -6.2306 6.9409 41 1 3.2274 -5.6540 6.5999 42 1 0.6457 -4.3232 5.6588 43 1 1.7386 -5.2994 4.6483 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714297517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:16 Heat of formation + Delta-G solvation = 0.657821 kcal Electronic energy + Delta-G solvation = -20842.434478 eV Core-core repulsion = 17695.251846 eV Total energy + Delta-G solvation = -3147.182633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.06525 -38.07071 -36.78751 -35.01071 -33.19159 -32.17111 -30.89443 -30.48850 -27.90532 -27.70097 -24.62937 -23.13902 -22.49190 -21.76655 -20.77313 -19.85927 -18.70978 -17.45095 -16.48612 -16.41524 -15.33670 -15.22138 -14.89759 -14.56256 -14.20660 -13.99282 -13.83390 -13.49672 -12.94983 -12.75916 -12.70191 -12.48492 -12.19927 -12.01464 -11.93434 -11.90344 -11.75784 -11.20839 -10.95070 -10.87628 -10.81663 -10.57877 -10.53948 -10.31274 -10.19477 -10.12879 -9.83054 -9.55828 -9.08474 -8.86677 -7.24049 -5.74726 -3.09932 1.37862 2.03507 2.89996 3.36494 3.39629 3.42961 3.47485 3.90134 4.46208 4.58421 4.61466 4.64932 4.79661 4.94302 5.06566 5.10821 5.11274 5.29002 5.34567 5.46492 5.48497 5.51558 5.54654 5.61493 5.68582 5.71283 5.75668 5.78917 5.92171 6.09266 6.16164 6.18301 6.35847 6.44684 6.50773 6.64080 6.90437 6.95926 7.05966 7.31267 7.99810 8.02186 8.44626 9.23471 9.96226 10.16229 11.43691 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042552 B = 0.002684 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.862572 B =10428.267607 C =10455.707520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.008 3.992 3 C -0.147 4.147 4 C -0.080 4.080 5 C -0.220 4.220 6 C 0.630 3.370 7 O -0.522 6.522 8 N -0.712 5.712 9 C 0.144 3.856 10 H 0.091 0.909 11 C -0.125 4.125 12 C -0.132 4.132 13 C 0.181 3.819 14 H 0.055 0.945 15 N -0.750 5.750 16 C -0.241 4.241 17 H 0.090 0.910 18 C 0.002 3.998 19 N -0.935 5.935 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.124 4.124 25 C -0.119 4.119 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.401 0.599 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 7.752 -27.581 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.010 4.010 3 C -0.205 4.205 4 C -0.083 4.083 5 C -0.223 4.223 6 C 0.417 3.583 7 O -0.399 6.399 8 N -0.362 5.362 9 C 0.041 3.959 10 H 0.109 0.891 11 C -0.164 4.164 12 C -0.173 4.173 13 C 0.072 3.928 14 H 0.073 0.927 15 N -0.392 5.392 16 C -0.371 4.371 17 H 0.108 0.892 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.163 4.163 25 C -0.157 4.157 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.236 0.764 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.193 0.807 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.786 7.925 -27.080 28.469 hybrid contribution 0.486 -1.020 -0.059 1.131 sum -3.300 6.905 -27.139 28.197 Atomic orbital electron populations 1.21856 0.92739 1.02836 1.02949 1.18509 0.96273 0.95321 0.90875 1.21852 1.01909 0.93825 1.02884 1.22624 0.97104 0.94576 0.93960 1.20839 1.01879 1.02631 0.96985 1.14717 0.85074 0.78503 0.80055 1.90877 1.17152 1.62343 1.69536 1.46014 1.13908 1.48331 1.27932 1.21213 0.99571 0.91954 0.83140 0.89130 1.21913 1.01632 0.98321 0.94582 1.22191 1.00251 0.99061 0.95817 1.20222 0.96605 0.90459 0.85522 0.92675 1.42791 1.55000 1.38979 1.02388 1.19076 1.22243 1.13958 0.81826 0.89231 1.24680 1.00133 0.99350 0.95144 1.69701 1.48033 1.43622 0.96941 0.86544 0.81876 0.83227 0.76854 1.21114 1.21830 1.20318 1.21803 1.01409 0.99010 0.94035 1.21753 0.99581 0.95680 0.98699 0.91165 0.91927 0.91888 0.88091 0.91868 0.91164 0.91899 0.76444 0.92067 0.91951 0.91188 0.92497 0.80688 0.93113 0.91194 0.92010 0.91221 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.15 37.16 0.34 -0.31 16 2 C 0.01 0.05 3.30 -93.41 -0.31 -0.26 16 3 C -0.15 -0.77 9.15 37.15 0.34 -0.43 16 4 C -0.08 -0.76 12.56 -37.12 -0.47 -1.22 16 5 C -0.22 -2.60 13.61 -38.84 -0.53 -3.13 16 6 C 0.63 8.65 7.61 -14.33 -0.11 8.54 16 7 O -0.52 -9.24 16.75 5.26 0.09 -9.15 16 8 N -0.71 -8.02 5.07 -56.24 -0.29 -8.30 16 9 C 0.14 1.86 2.45 -67.93 -0.17 1.69 16 10 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 11 C -0.13 -1.82 5.49 -26.73 -0.15 -1.97 16 12 C -0.13 -2.33 5.50 -26.73 -0.15 -2.47 16 13 C 0.18 3.37 2.77 -67.93 -0.19 3.19 16 14 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 15 N -0.75 -17.59 4.93 -53.43 -0.26 -17.86 16 16 C -0.24 -6.78 10.41 -15.06 -0.16 -6.93 16 17 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 18 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 19 N -0.94 -29.51 13.97 55.49 0.78 -28.73 16 20 Si 0.88 22.28 27.74 -169.99 -4.71 17.56 16 21 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 24 C -0.12 -1.83 5.39 -26.70 -0.14 -1.97 16 25 C -0.12 -1.37 5.40 -26.70 -0.14 -1.52 16 26 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.40 3.36 8.57 -40.82 -0.35 3.01 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.36 8.35 5.66 -40.82 -0.23 8.12 16 39 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -33.80 355.86 -8.28 -42.09 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.33 Total: 5.85 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.92 Total: -6.82 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.23 Total: -54.89 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.80 -8.28 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714297517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.744 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds