Wall clock time and date at job start Tue Mar 31 2020 00:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52991 * 109.47129 * 2 1 4 4 C 1.47196 * 109.46942 * 120.00565 * 2 1 3 5 5 C 2.64595 * 109.47051 * 120.00368 * 2 1 3 6 6 C 4.07798 * 109.47073 * 120.00253 * 2 1 3 7 7 O 1.21616 * 120.00158 * 165.65654 * 6 5 4 8 8 N 1.34781 * 120.00155 * 345.65299 * 6 5 4 9 9 C 1.46499 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47391 * 325.00213 * 9 8 6 11 11 C 1.53000 * 109.46840 * 85.00543 * 9 8 6 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46963 * 299.99499 * 12 11 9 14 14 H 1.09002 * 109.47067 * 300.00341 * 13 12 11 15 15 N 1.46496 * 109.47313 * 180.02562 * 13 12 11 16 16 C 1.36933 * 120.00258 * 85.00379 * 15 13 12 17 17 H 1.07997 * 120.00195 * 359.97438 * 16 15 13 18 18 C 1.38814 * 120.00104 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00032 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99990 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47333 * 90.00214 * 20 18 16 22 22 H 1.48503 * 109.46896 * 210.00182 * 20 18 16 23 23 H 1.48500 * 109.47061 * 329.99866 * 20 18 16 24 24 C 1.52997 * 109.47092 * 60.00194 * 13 12 11 25 25 C 1.53002 * 109.46799 * 205.00309 * 9 8 6 26 26 H 1.08992 * 109.46873 * 59.99838 * 1 2 3 27 27 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46567 * 299.99775 * 1 2 3 29 29 H 1.09004 * 109.46567 * 240.00225 * 2 1 3 30 30 H 1.09002 * 109.47054 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47130 * 300.00036 * 3 2 1 32 32 H 1.08994 * 109.47509 * 60.00142 * 3 2 1 33 33 H 0.97002 * 119.99716 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47194 * 299.99493 * 11 9 8 35 35 H 1.08992 * 109.47399 * 59.99666 * 11 9 8 36 36 H 1.09000 * 109.47437 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.47508 * 59.99571 * 12 11 9 38 38 H 0.97007 * 119.99693 * 264.99991 * 15 13 12 39 39 H 0.97001 * 120.00297 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.47375 * 180.02562 * 24 13 12 41 41 H 1.09002 * 109.47497 * 59.99850 * 24 13 12 42 42 H 1.09002 * 109.47075 * 299.99543 * 25 9 8 43 43 H 1.08996 * 109.47407 * 60.00500 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0207 -0.6940 1.2018 5 6 2.4120 -1.2475 2.1603 6 6 2.8894 -1.9225 3.3296 7 8 4.0482 -1.7940 3.6755 8 7 2.0544 -2.7003 4.0468 9 6 2.5429 -3.3913 5.2427 10 1 3.5781 -3.6960 5.0889 11 6 2.4619 -2.4488 6.4451 12 6 2.9727 -3.1702 7.6939 13 6 2.1112 -4.4071 7.9565 14 1 1.0760 -4.1027 8.1106 15 7 2.5999 -5.0976 9.1526 16 6 2.1765 -4.7013 10.3930 17 1 1.4827 -3.8793 10.4897 18 6 2.6400 -5.3553 11.5264 19 7 2.2335 -4.9740 12.7187 20 14 3.8406 -6.7765 11.3592 21 1 5.2312 -6.2565 11.3939 22 1 3.6400 -7.7285 12.4812 23 1 3.6051 -7.4745 10.0698 24 6 2.1921 -5.3496 6.7541 25 6 1.6809 -4.6279 5.5049 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.1302 -2.8030 3.7708 34 1 3.0760 -1.5678 6.2583 35 1 1.4268 -2.1441 6.5989 36 1 2.9146 -2.4990 8.5507 37 1 4.0080 -3.4746 7.5399 38 1 3.2233 -5.8357 9.0657 39 1 2.5570 -5.4312 13.5107 40 1 1.5780 -6.2306 6.9409 41 1 3.2274 -5.6540 6.5999 42 1 0.6457 -4.3232 5.6588 43 1 1.7386 -5.2994 4.6483 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714297517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:15 Heat of formation + Delta-G solvation = -21.738707 kcal Electronic energy + Delta-G solvation = -20843.405665 eV Core-core repulsion = 17695.251846 eV Total energy + Delta-G solvation = -3148.153819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.16607 -39.37318 -37.33135 -36.52438 -34.74671 -33.27384 -32.54121 -31.72293 -29.37932 -28.05356 -25.86147 -24.64216 -23.68208 -22.73663 -21.99639 -21.23462 -19.94492 -19.25299 -17.55036 -17.11605 -16.80106 -16.31309 -16.23515 -15.65151 -15.36261 -15.07742 -14.99432 -14.68176 -14.42838 -14.37247 -13.70709 -13.42530 -13.12949 -13.10222 -12.97432 -12.90554 -12.52358 -12.42387 -12.38102 -12.30034 -12.07990 -11.98334 -11.80013 -11.58072 -11.45898 -11.28030 -11.24300 -11.22829 -10.88612 -10.17305 -9.29513 -8.01168 -5.33991 0.46962 1.22490 1.38118 1.41788 1.48834 1.98333 2.43725 2.49543 3.13960 3.29935 3.58659 3.71219 3.82777 4.05300 4.12556 4.17300 4.22509 4.29419 4.33282 4.44580 4.52881 4.56649 4.60637 4.79285 4.81864 4.91887 4.93187 4.96570 5.06532 5.11406 5.12276 5.21864 5.24832 5.32342 5.36340 5.36641 5.48647 5.58692 5.79461 6.17448 6.23576 6.38027 7.03006 7.09831 7.87021 8.05707 9.20480 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042552 B = 0.002684 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.862572 B =10428.267607 C =10455.707520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.003 3.997 3 C -0.148 4.148 4 C -0.042 4.042 5 C -0.273 4.273 6 C 0.631 3.369 7 O -0.573 6.573 8 N -0.694 5.694 9 C 0.151 3.849 10 H 0.075 0.925 11 C -0.116 4.116 12 C -0.124 4.124 13 C 0.174 3.826 14 H 0.047 0.953 15 N -0.753 5.753 16 C -0.225 4.225 17 H 0.056 0.944 18 C -0.069 4.069 19 N -0.986 5.986 20 Si 0.955 3.045 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.248 1.248 24 C -0.116 4.116 25 C -0.106 4.106 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.124 0.876 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.419 0.581 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.051 0.949 38 H 0.365 0.635 39 H 0.257 0.743 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.254 6.948 -31.255 32.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.014 4.014 3 C -0.205 4.205 4 C -0.045 4.045 5 C -0.276 4.276 6 C 0.419 3.581 7 O -0.453 6.453 8 N -0.344 5.344 9 C 0.047 3.953 10 H 0.093 0.907 11 C -0.155 4.155 12 C -0.165 4.165 13 C 0.067 3.933 14 H 0.066 0.934 15 N -0.396 5.396 16 C -0.357 4.357 17 H 0.074 0.926 18 C -0.260 4.260 19 N -0.637 5.637 20 Si 0.782 3.218 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.172 1.172 24 C -0.155 4.155 25 C -0.145 4.145 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.141 0.859 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.256 0.744 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.198 0.802 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.586 7.121 -30.831 31.973 hybrid contribution 0.633 -0.610 0.993 1.327 sum -3.952 6.511 -29.837 30.794 Atomic orbital electron populations 1.21865 0.91318 1.03230 1.03720 1.18876 0.97353 0.95411 0.89803 1.21878 1.01392 0.93469 1.03747 1.23479 0.94983 0.92504 0.93514 1.20625 1.04309 1.04790 0.97868 1.14951 0.84519 0.78178 0.80446 1.90844 1.19263 1.64212 1.71031 1.45789 1.14515 1.47266 1.26846 1.21024 0.99424 0.92128 0.82772 0.90689 1.21788 1.01758 0.97944 0.93994 1.22015 0.99980 0.98333 0.96195 1.20481 0.95890 0.91407 0.85548 0.93443 1.42834 1.55121 1.39424 1.02205 1.19032 1.20483 1.12244 0.83901 0.92625 1.25522 1.02841 1.02887 0.94732 1.69888 1.50291 1.45627 0.97870 0.85404 0.78928 0.79585 0.77848 1.20986 1.22327 1.17194 1.21706 1.02118 0.98403 0.93268 1.21677 0.99796 0.94947 0.98037 0.89010 0.91744 0.92577 0.85881 0.92754 0.88678 0.92736 0.74394 0.93361 0.90781 0.94345 0.93060 0.80207 0.93470 0.90510 0.91688 0.89471 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.15 71.99 0.66 -0.17 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.15 -1.17 9.15 71.98 0.66 -0.52 16 4 C -0.04 -0.72 12.56 31.12 0.39 -0.33 16 5 C -0.27 -6.21 13.61 30.02 0.41 -5.80 16 6 C 0.63 17.12 7.61 85.49 0.65 17.77 16 7 O -0.57 -20.70 16.75 -4.08 -0.07 -20.77 16 8 N -0.69 -14.51 5.07 -450.10 -2.28 -16.79 16 9 C 0.15 3.64 2.45 44.99 0.11 3.75 16 10 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16 11 C -0.12 -3.33 5.49 30.59 0.17 -3.16 16 12 C -0.12 -4.45 5.50 30.60 0.17 -4.28 16 13 C 0.17 6.39 2.77 44.99 0.12 6.51 16 14 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 15 N -0.75 -35.08 4.93 -322.95 -1.59 -36.67 16 16 C -0.23 -12.95 10.41 84.03 0.87 -12.08 16 17 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 18 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 19 N -0.99 -64.16 13.97 21.65 0.30 -63.86 16 20 Si 0.95 46.18 27.74 68.60 1.90 48.08 16 21 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 23 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 24 C -0.12 -3.14 5.39 30.61 0.17 -2.98 16 25 C -0.11 -2.11 5.40 30.61 0.17 -1.94 16 26 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.42 5.90 8.57 -92.71 -0.79 5.11 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.36 16.29 5.66 -92.70 -0.52 15.77 16 39 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 40 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -76.68 355.86 2.85 -73.83 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.38 Total: 23.06 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 4.97 Total: -6.88 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -3.57 Total: -117.32 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.07 Total: -20.77 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.08 kcal Total: -76.68 2.85 -73.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714297517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.087 kcal (2) G-P(sol) polarization free energy of solvation -76.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds