Wall clock time and date at job start Tue Mar 31 2020 00:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32994 * 120.00317 * 2 1 4 4 C 1.47097 * 120.00097 * 172.48470 * 3 2 1 5 5 O 1.21611 * 120.00048 * 352.81965 * 4 3 2 6 6 N 1.34779 * 120.00091 * 172.81506 * 4 3 2 7 7 C 1.46505 * 120.00017 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.46954 * 184.88084 * 7 6 4 9 9 H 1.09004 * 110.00285 * 53.72413 * 8 7 6 10 10 C 1.54328 * 109.88313 * 292.63238 * 8 7 6 11 11 C 1.55280 * 103.00893 * 218.47010 * 10 8 7 12 12 C 1.54911 * 101.52667 * 35.35584 * 11 10 8 13 13 N 1.47024 * 109.88524 * 174.82374 * 8 7 6 14 14 C 1.36935 * 125.64488 * 298.33761 * 13 8 7 15 15 H 1.07993 * 120.00166 * 351.22687 * 14 13 8 16 16 C 1.38815 * 119.99770 * 171.22430 * 14 13 8 17 17 N 1.31617 * 120.00017 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99917 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46945 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46924 * 120.00337 * 18 16 14 21 21 H 1.48506 * 109.46726 * 240.00296 * 18 16 14 22 22 C 1.50700 * 119.99689 * 179.97438 * 2 1 3 23 23 C 1.53002 * 117.50144 * 0.12958 * 22 2 1 24 24 C 1.53003 * 117.50166 * 291.46553 * 22 2 1 25 25 H 1.08992 * 109.47402 * 89.99952 * 1 2 3 26 26 H 1.08995 * 109.47292 * 210.00496 * 1 2 3 27 27 H 1.09008 * 109.46594 * 330.00231 * 1 2 3 28 28 H 1.07997 * 119.99780 * 352.48025 * 3 2 1 29 29 H 0.96993 * 119.99748 * 359.97438 * 6 4 3 30 30 H 1.09001 * 109.47226 * 64.87953 * 7 6 4 31 31 H 1.08999 * 109.46786 * 304.87843 * 7 6 4 32 32 H 1.08998 * 110.71746 * 336.75121 * 10 8 7 33 33 H 1.08999 * 110.72326 * 100.02765 * 10 8 7 34 34 H 1.08998 * 110.95814 * 277.33523 * 11 10 8 35 35 H 1.08996 * 111.10145 * 153.44742 * 11 10 8 36 36 H 1.08996 * 110.36859 * 204.23430 * 12 11 10 37 37 H 1.09008 * 110.35977 * 82.02239 * 12 11 10 38 38 H 0.97001 * 119.99827 * 179.97438 * 17 16 14 39 39 H 1.09004 * 115.54849 * 145.79294 * 22 2 1 40 40 H 1.09004 * 117.49415 * 359.97438 * 23 22 2 41 41 H 1.08991 * 117.50137 * 145.02150 * 23 22 2 42 42 H 1.09002 * 117.49803 * 214.98231 * 24 22 2 43 43 H 1.08996 * 117.49243 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6335 1.1571 0.1666 5 8 4.2188 0.1253 0.4343 6 7 4.3240 2.3056 0.0225 7 6 5.7797 2.3109 0.1879 8 6 6.2984 3.7472 0.0940 9 1 5.7657 4.3829 0.8013 10 6 6.1056 4.2821 -1.3407 11 6 7.3947 5.1142 -1.5796 12 6 8.4488 4.2798 -0.8099 13 7 7.7399 3.7780 0.3813 14 6 8.3268 3.4031 1.5603 15 1 7.7146 3.1834 2.4224 16 6 9.7088 3.3055 1.6474 17 7 10.4550 3.5737 0.5969 18 14 10.5095 2.7934 3.2556 19 1 9.4586 2.5504 4.2763 20 1 11.2924 1.5494 3.0445 21 1 11.4139 3.8740 3.7243 22 6 2.2604 -1.3051 0.0006 23 6 1.4383 -2.5955 -0.0019 24 6 2.1836 -2.1648 1.2640 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5139 28 1 1.6390 2.0830 -0.1224 29 1 3.8572 3.1285 -0.1915 30 1 6.2367 1.7075 -0.5965 31 1 6.0361 1.8949 1.1622 32 1 6.0417 3.4600 -2.0534 33 1 5.2204 4.9154 -1.4005 34 1 7.2991 6.1125 -1.1527 35 1 7.6369 5.1664 -2.6411 36 1 9.2886 4.9088 -0.5147 37 1 8.7957 3.4482 -1.4233 38 1 11.4207 3.5057 0.6578 39 1 3.1999 -1.3059 -0.5523 40 1 0.3525 -2.5004 -0.0035 41 1 1.8370 -3.4452 -0.5559 42 1 3.0723 -2.7313 1.5421 43 1 1.5884 -1.7860 2.0948 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714611064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:51 Heat of formation + Delta-G solvation = 5.451141 kcal Electronic energy + Delta-G solvation = -21663.497285 eV Core-core repulsion = 18516.522506 eV Total energy + Delta-G solvation = -3146.974779 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93066 -39.46611 -38.48646 -35.66046 -34.43024 -34.27206 -31.49439 -30.57924 -28.76247 -26.74335 -25.71375 -24.05375 -23.20634 -22.11430 -21.65131 -21.22056 -19.62986 -18.75460 -17.93295 -17.39162 -16.86781 -16.40250 -16.06604 -15.84064 -15.65164 -15.18243 -14.55562 -14.35696 -13.95402 -13.93784 -13.88145 -13.64203 -13.43504 -13.11700 -13.04413 -12.89610 -12.72798 -12.47224 -12.18103 -12.00764 -11.86225 -11.67379 -11.67230 -11.44176 -11.41907 -11.28973 -10.73670 -10.54404 -10.10167 -9.68897 -8.91405 -7.87289 -5.25859 0.40646 1.41848 1.43784 1.53373 2.29661 2.33779 2.50695 3.05206 3.29267 3.63006 3.71401 3.88409 3.96702 3.99331 4.04799 4.17266 4.24002 4.28038 4.43072 4.46459 4.54378 4.67443 4.72389 4.75872 4.84744 4.95258 4.96770 4.98422 5.11906 5.14005 5.21458 5.23381 5.27181 5.40237 5.46200 5.46641 5.59772 5.66977 5.69480 5.78444 6.23180 6.73262 7.07890 7.40311 7.75137 8.38962 9.20924 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019870 B = 0.003983 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.835984 B = 7028.519166 C = 8056.335909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.000 4.000 3 C -0.235 4.235 4 C 0.527 3.473 5 O -0.586 6.586 6 N -0.708 5.708 7 C 0.132 3.868 8 C 0.148 3.852 9 H 0.049 0.951 10 C -0.113 4.113 11 C -0.133 4.133 12 C 0.167 3.833 13 N -0.613 5.613 14 C -0.237 4.237 15 H 0.075 0.925 16 C -0.062 4.062 17 N -0.946 5.946 18 Si 0.972 3.028 19 H -0.270 1.270 20 H -0.294 1.294 21 H -0.286 1.286 22 C -0.141 4.141 23 C -0.162 4.162 24 C -0.167 4.167 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.164 0.836 29 H 0.414 0.586 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.050 0.950 37 H -0.014 1.014 38 H 0.247 0.753 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.327 -2.939 -4.517 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.002 4.002 3 C -0.256 4.256 4 C 0.319 3.681 5 O -0.469 6.469 6 N -0.360 5.360 7 C 0.005 3.995 8 C 0.041 3.959 9 H 0.067 0.933 10 C -0.150 4.150 11 C -0.171 4.171 12 C 0.042 3.958 13 N -0.338 5.338 14 C -0.366 4.366 15 H 0.093 0.907 16 C -0.255 4.255 17 N -0.595 5.595 18 Si 0.801 3.199 19 H -0.194 1.194 20 H -0.222 1.222 21 H -0.213 1.213 22 C -0.159 4.159 23 C -0.198 4.198 24 C -0.205 4.205 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.181 0.819 29 H 0.251 0.749 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.004 0.996 38 H 0.057 0.943 39 H 0.110 0.890 40 H 0.141 0.859 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.681 -3.651 -4.234 23.360 hybrid contribution 1.474 -0.194 0.814 1.695 sum -21.207 -3.845 -3.420 21.823 Atomic orbital electron populations 1.21084 0.87860 1.04559 1.04396 1.22151 0.97180 0.92143 0.88678 1.22470 0.90982 1.00592 1.11509 1.19365 0.89438 0.82865 0.76470 1.90754 1.72582 1.33293 1.50241 1.45783 1.07259 1.11503 1.71470 1.21589 0.79680 0.99339 0.98854 1.21329 0.85320 0.92313 0.96973 0.93325 1.22630 0.98851 0.99558 0.93979 1.22892 0.95473 0.98528 1.00236 1.21424 0.94160 0.94146 0.86108 1.44797 1.01549 1.75504 1.11922 1.19349 0.90270 1.38252 0.88754 0.90741 1.25602 0.96893 1.02290 1.00708 1.70145 1.03937 1.55803 1.29635 0.85099 0.78322 0.77135 0.79348 1.19446 1.22160 1.21252 1.21313 1.00262 0.90374 1.03926 1.23250 0.99881 0.96781 0.99905 1.22818 1.02655 1.02892 0.92089 0.88534 0.89835 0.89328 0.81892 0.74871 0.94953 0.95286 0.91614 0.87565 0.91161 0.89814 0.93197 0.99580 0.94317 0.89016 0.85860 0.88361 0.90274 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.53 71.24 0.68 -0.62 16 2 C 0.00 0.01 5.80 -17.62 -0.10 -0.09 16 3 C -0.24 -5.14 9.62 23.43 0.23 -4.91 16 4 C 0.53 17.00 7.65 86.57 0.66 17.66 16 5 O -0.59 -24.33 13.41 -4.06 -0.05 -24.39 16 6 N -0.71 -21.44 5.41 -466.72 -2.52 -23.96 16 7 C 0.13 5.35 5.11 86.38 0.44 5.79 16 8 C 0.15 5.84 3.22 45.34 0.15 5.99 16 9 H 0.05 1.84 8.14 -2.38 -0.02 1.83 16 10 C -0.11 -3.46 6.11 31.83 0.19 -3.27 16 11 C -0.13 -4.67 7.10 32.03 0.23 -4.44 16 12 C 0.17 8.27 5.55 86.86 0.48 8.75 16 13 N -0.61 -31.66 3.13 -668.26 -2.09 -33.75 16 14 C -0.24 -13.62 9.73 84.03 0.82 -12.80 16 15 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 16 C -0.06 -3.61 5.48 84.86 0.47 -3.14 16 17 N -0.95 -57.91 10.35 21.65 0.22 -57.68 16 18 Si 0.97 47.48 29.55 68.60 2.03 49.51 16 19 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 C -0.14 -3.50 4.24 -11.54 -0.05 -3.55 16 23 C -0.16 -2.84 9.80 30.62 0.30 -2.54 16 24 C -0.17 -3.87 10.24 30.62 0.31 -3.55 16 25 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 0.74 6.30 -2.39 -0.02 0.73 16 27 H 0.09 0.70 8.07 -2.38 -0.02 0.68 16 28 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 29 H 0.41 9.09 8.25 -92.71 -0.76 8.32 16 30 H 0.03 1.47 8.02 -2.39 -0.02 1.45 16 31 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16 32 H 0.07 2.02 7.76 -2.39 -0.02 2.00 16 33 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.05 2.81 6.50 -2.39 -0.02 2.79 16 37 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 38 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.09 3.01 6.42 -2.38 -0.02 3.00 16 40 H 0.12 1.46 6.27 -2.39 -0.01 1.44 16 41 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -75.53 345.24 2.61 -72.92 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.23 Total: 18.07 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 4.80 Total: -0.72 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -4.39 Total: -115.40 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.39 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -75.53 2.61 -72.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714611064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.373 kcal (2) G-P(sol) polarization free energy of solvation -75.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds