Wall clock time and date at job start Tue Mar 31 2020 00:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32993 * 119.99768 * 2 1 4 4 C 1.47109 * 119.99452 * 172.46967 * 3 2 1 5 5 O 1.21615 * 120.00090 * 353.73199 * 4 3 2 6 6 N 1.34773 * 119.99743 * 173.45680 * 4 3 2 7 7 C 1.46496 * 119.99962 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47401 * 185.13724 * 7 6 4 9 9 H 1.09002 * 109.87664 * 300.19581 * 8 7 6 10 10 C 1.54330 * 109.87907 * 61.20624 * 8 7 6 11 11 C 1.55165 * 102.94020 * 141.61151 * 10 8 7 12 12 C 1.54910 * 101.58210 * 324.49726 * 11 10 8 13 13 N 1.47020 * 109.88469 * 179.01117 * 8 7 6 14 14 C 1.36939 * 125.64701 * 61.62854 * 13 8 7 15 15 H 1.08009 * 119.99869 * 13.94031 * 14 13 8 16 16 C 1.38816 * 120.00202 * 193.94556 * 14 13 8 17 17 N 1.31613 * 119.99728 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99976 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47191 * 59.99701 * 18 16 14 20 20 H 1.48498 * 109.47152 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46911 * 299.99680 * 18 16 14 22 22 C 1.50700 * 119.99790 * 180.02562 * 2 1 3 23 23 C 1.52999 * 117.50022 * 0.40580 * 22 2 1 24 24 C 1.52996 * 60.00060 * 252.51353 * 23 22 2 25 25 H 1.09005 * 109.47051 * 89.99626 * 1 2 3 26 26 H 1.08996 * 109.47542 * 209.99580 * 1 2 3 27 27 H 1.08999 * 109.46869 * 329.99893 * 1 2 3 28 28 H 1.07995 * 120.00514 * 352.46810 * 3 2 1 29 29 H 0.97003 * 120.00255 * 0.02562 * 6 4 3 30 30 H 1.09004 * 109.47279 * 305.14298 * 7 6 4 31 31 H 1.09008 * 109.47203 * 65.13876 * 7 6 4 32 32 H 1.08998 * 110.71949 * 259.97093 * 10 8 7 33 33 H 1.08999 * 110.72187 * 23.25157 * 10 8 7 34 34 H 1.08995 * 111.00318 * 82.57363 * 11 10 8 35 35 H 1.09004 * 111.00332 * 206.42615 * 11 10 8 36 36 H 1.08996 * 110.36838 * 155.84874 * 12 11 10 37 37 H 1.09000 * 110.36624 * 278.06192 * 12 11 10 38 38 H 0.97001 * 119.99859 * 180.02562 * 17 16 14 39 39 H 1.08993 * 115.54977 * 146.11978 * 22 2 1 40 40 H 1.09006 * 117.49751 * 0.02562 * 23 22 2 41 41 H 1.08997 * 117.50354 * 145.02317 * 23 22 2 42 42 H 1.08999 * 117.49797 * 252.50683 * 24 23 22 43 43 H 1.09002 * 117.49850 * 107.48927 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6335 1.1572 0.1670 5 8 4.2207 0.1223 0.4186 6 7 4.3225 2.3080 0.0356 7 6 5.7779 2.3136 0.2024 8 6 6.2940 3.7521 0.1306 9 1 6.0380 4.1899 -0.8342 10 6 5.6732 4.5898 1.2684 11 6 6.8486 5.5013 1.7100 12 6 8.0612 4.5541 1.5304 13 7 7.7518 3.7704 0.3207 14 6 8.6702 3.1601 -0.4914 15 1 8.3752 2.8025 -1.4669 16 6 9.9802 3.0010 -0.0607 17 7 10.3397 3.4371 1.1279 18 14 11.2328 2.1679 -1.1682 19 1 11.3617 2.9340 -2.4336 20 1 12.5485 2.1229 -0.4811 21 1 10.7840 0.7850 -1.4703 22 6 2.2605 -1.3051 -0.0006 23 6 1.4384 -2.5955 -0.0108 24 6 2.1775 -2.1693 1.2593 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6390 2.0830 -0.1226 29 1 3.8546 3.1329 -0.1686 30 1 6.0343 1.8834 1.1706 31 1 6.2368 1.7229 -0.5905 32 1 4.8404 5.1871 0.8972 33 1 5.3533 3.9482 2.0894 34 1 6.9333 6.3721 1.0599 35 1 6.7393 5.8027 2.7518 36 1 8.9747 5.1307 1.3855 37 1 8.1609 3.8975 2.3946 38 1 11.2552 3.3263 1.4287 39 1 3.2025 -1.3038 -0.5488 40 1 0.3525 -2.5004 -0.0175 41 1 1.8394 -3.4434 -0.5659 42 1 3.0648 -2.7369 1.5397 43 1 1.5778 -1.7938 2.0885 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714611065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:56 Heat of formation + Delta-G solvation = 24.695866 kcal Electronic energy + Delta-G solvation = -21685.232033 eV Core-core repulsion = 18539.091768 eV Total energy + Delta-G solvation = -3146.140265 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.67452 -38.02195 -37.25233 -34.10858 -33.42499 -32.44371 -29.76604 -28.97087 -27.77428 -24.94658 -24.09775 -22.92537 -22.33231 -20.67605 -20.09369 -19.60105 -18.45825 -17.13649 -16.47809 -16.04744 -15.32646 -15.01080 -14.60344 -14.41929 -13.98187 -13.70880 -13.65470 -13.20413 -12.98252 -12.80714 -12.39307 -12.06041 -11.86089 -11.75949 -11.57484 -11.33641 -11.26763 -10.93150 -10.79684 -10.75738 -10.39399 -10.20627 -10.10812 -9.89998 -9.81457 -9.68842 -9.27157 -8.94849 -8.58991 -8.44485 -6.82862 -5.74794 -3.11346 1.36952 3.41545 3.46475 3.47310 3.52676 3.63657 3.95932 4.48950 4.50894 4.74642 4.96442 5.02652 5.07952 5.30034 5.32925 5.35706 5.43245 5.44917 5.52673 5.55318 5.64836 5.67843 5.83189 5.85569 6.08227 6.09484 6.15313 6.24151 6.26743 6.31332 6.48299 6.52071 6.59611 6.66201 6.77105 6.89737 7.10832 7.53437 7.62070 7.80477 7.94278 8.27482 8.64300 9.19178 9.79824 10.47145 11.37033 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.003971 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.330406 B = 7050.082176 C = 8010.659570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.013 4.013 3 C -0.220 4.220 4 C 0.536 3.464 5 O -0.539 6.539 6 N -0.721 5.721 7 C 0.111 3.889 8 C 0.152 3.848 9 H 0.037 0.963 10 C -0.126 4.126 11 C -0.149 4.149 12 C 0.172 3.828 13 N -0.589 5.589 14 C -0.234 4.234 15 H 0.075 0.925 16 C -0.001 4.001 17 N -0.917 5.917 18 Si 0.911 3.089 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C -0.113 4.113 23 C -0.193 4.193 24 C -0.155 4.155 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.125 0.875 29 H 0.394 0.606 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.254 0.746 39 H 0.132 0.868 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.778 -2.963 -0.886 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.015 4.015 3 C -0.241 4.241 4 C 0.325 3.675 5 O -0.419 6.419 6 N -0.371 5.371 7 C -0.014 4.014 8 C 0.043 3.957 9 H 0.054 0.946 10 C -0.164 4.164 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.314 5.314 14 C -0.362 4.362 15 H 0.093 0.907 16 C -0.198 4.198 17 N -0.563 5.563 18 Si 0.741 3.259 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.131 4.131 23 C -0.229 4.229 24 C -0.192 4.192 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.143 0.857 29 H 0.227 0.773 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.150 0.850 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.042 -3.726 -0.682 19.416 hybrid contribution 0.504 -0.016 -0.611 0.792 sum -18.539 -3.742 -1.293 18.957 Atomic orbital electron populations 1.20990 0.91365 1.03106 1.02825 1.21755 0.94990 0.93464 0.91298 1.22451 0.93963 0.98431 1.09283 1.18533 0.87521 0.83794 0.77668 1.90759 1.71141 1.31475 1.48504 1.46059 1.09307 1.10048 1.71727 1.22172 0.76917 1.00312 1.02023 1.21125 0.86758 0.91607 0.96188 0.94571 1.22596 0.97371 0.98072 0.98348 1.23009 0.97712 0.98513 0.99504 1.21459 0.94115 0.91136 0.88556 1.44476 0.98268 1.59693 1.28936 1.18951 0.89363 1.31850 0.96070 0.90708 1.24896 0.97882 1.00492 0.96565 1.69925 1.17688 1.50381 1.18267 0.86223 0.80587 0.79630 0.79487 1.21078 1.21550 1.20968 1.21400 1.00436 0.87835 1.03419 1.23135 0.98731 0.98721 1.02358 1.22777 1.02463 1.02640 0.91289 0.90476 0.90918 0.91082 0.85688 0.77253 0.91628 0.91856 0.92437 0.91829 0.92320 0.92374 0.90849 0.95709 0.93569 0.85042 0.88806 0.88778 0.88516 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 9.52 36.01 0.34 -0.62 16 2 C -0.01 -0.15 5.80 -101.17 -0.59 -0.74 16 3 C -0.22 -2.66 9.62 -37.80 -0.36 -3.03 16 4 C 0.54 8.67 7.67 -12.66 -0.10 8.57 16 5 O -0.54 -10.68 13.37 5.26 0.07 -10.61 16 6 N -0.72 -11.20 5.28 -61.49 -0.32 -11.53 16 7 C 0.11 2.20 5.05 -4.05 -0.02 2.18 16 8 C 0.15 3.04 3.26 -66.95 -0.22 2.82 16 9 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 10 C -0.13 -2.12 5.93 -24.89 -0.15 -2.27 16 11 C -0.15 -2.75 7.09 -24.58 -0.17 -2.93 16 12 C 0.17 4.15 5.42 -2.53 -0.01 4.14 16 13 N -0.59 -14.83 3.13 -162.57 -0.51 -15.34 16 14 C -0.23 -6.49 9.83 -15.06 -0.15 -6.64 16 15 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 16 C 0.00 -0.03 5.47 -17.43 -0.10 -0.13 16 17 N -0.92 -26.90 10.55 55.49 0.59 -26.32 16 18 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 22 C -0.11 -1.44 4.27 -91.77 -0.39 -1.83 16 23 C -0.19 -1.91 9.80 -26.73 -0.26 -2.17 16 24 C -0.15 -1.81 10.23 -26.73 -0.27 -2.08 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.50 6.32 -51.93 -0.33 0.17 16 27 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 28 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 29 H 0.39 4.87 8.20 -40.82 -0.33 4.54 16 30 H 0.07 1.47 8.13 -51.93 -0.42 1.05 16 31 H 0.06 1.41 8.01 -51.92 -0.42 0.99 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.96 6.88 -51.93 -0.36 1.61 16 37 H 0.02 0.65 8.07 -51.93 -0.42 0.23 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.13 2.06 6.36 -51.93 -0.33 1.73 16 40 H 0.09 0.76 6.28 -51.93 -0.33 0.43 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -31.75 345.66 -9.55 -41.31 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.11 Total: 4.72 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.45 Total: -4.71 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.25 Total: -53.18 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.07 Total: -10.61 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.75 -9.55 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714611065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.004 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds