Wall clock time and date at job start Tue Mar 31 2020 00:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32993 * 119.99768 * 2 1 4 4 C 1.47109 * 119.99452 * 172.46967 * 3 2 1 5 5 O 1.21615 * 120.00090 * 353.73199 * 4 3 2 6 6 N 1.34773 * 119.99743 * 173.45680 * 4 3 2 7 7 C 1.46496 * 119.99962 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47401 * 185.13724 * 7 6 4 9 9 H 1.09002 * 109.87664 * 300.19581 * 8 7 6 10 10 C 1.54330 * 109.87907 * 61.20624 * 8 7 6 11 11 C 1.55165 * 102.94020 * 141.61151 * 10 8 7 12 12 C 1.54910 * 101.58210 * 324.49726 * 11 10 8 13 13 N 1.47020 * 109.88469 * 179.01117 * 8 7 6 14 14 C 1.36939 * 125.64701 * 61.62854 * 13 8 7 15 15 H 1.08009 * 119.99869 * 13.94031 * 14 13 8 16 16 C 1.38816 * 120.00202 * 193.94556 * 14 13 8 17 17 N 1.31613 * 119.99728 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99976 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47191 * 59.99701 * 18 16 14 20 20 H 1.48498 * 109.47152 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46911 * 299.99680 * 18 16 14 22 22 C 1.50700 * 119.99790 * 180.02562 * 2 1 3 23 23 C 1.52999 * 117.50022 * 0.40580 * 22 2 1 24 24 C 1.52996 * 60.00060 * 252.51353 * 23 22 2 25 25 H 1.09005 * 109.47051 * 89.99626 * 1 2 3 26 26 H 1.08996 * 109.47542 * 209.99580 * 1 2 3 27 27 H 1.08999 * 109.46869 * 329.99893 * 1 2 3 28 28 H 1.07995 * 120.00514 * 352.46810 * 3 2 1 29 29 H 0.97003 * 120.00255 * 0.02562 * 6 4 3 30 30 H 1.09004 * 109.47279 * 305.14298 * 7 6 4 31 31 H 1.09008 * 109.47203 * 65.13876 * 7 6 4 32 32 H 1.08998 * 110.71949 * 259.97093 * 10 8 7 33 33 H 1.08999 * 110.72187 * 23.25157 * 10 8 7 34 34 H 1.08995 * 111.00318 * 82.57363 * 11 10 8 35 35 H 1.09004 * 111.00332 * 206.42615 * 11 10 8 36 36 H 1.08996 * 110.36838 * 155.84874 * 12 11 10 37 37 H 1.09000 * 110.36624 * 278.06192 * 12 11 10 38 38 H 0.97001 * 119.99859 * 180.02562 * 17 16 14 39 39 H 1.08993 * 115.54977 * 146.11978 * 22 2 1 40 40 H 1.09006 * 117.49751 * 0.02562 * 23 22 2 41 41 H 1.08997 * 117.50354 * 145.02317 * 23 22 2 42 42 H 1.08999 * 117.49797 * 252.50683 * 24 23 22 43 43 H 1.09002 * 117.49850 * 107.48927 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6335 1.1572 0.1670 5 8 4.2207 0.1223 0.4186 6 7 4.3225 2.3080 0.0356 7 6 5.7779 2.3136 0.2024 8 6 6.2940 3.7521 0.1306 9 1 6.0380 4.1899 -0.8342 10 6 5.6732 4.5898 1.2684 11 6 6.8486 5.5013 1.7100 12 6 8.0612 4.5541 1.5304 13 7 7.7518 3.7704 0.3207 14 6 8.6702 3.1601 -0.4914 15 1 8.3752 2.8025 -1.4669 16 6 9.9802 3.0010 -0.0607 17 7 10.3397 3.4371 1.1279 18 14 11.2328 2.1679 -1.1682 19 1 11.3617 2.9340 -2.4336 20 1 12.5485 2.1229 -0.4811 21 1 10.7840 0.7850 -1.4703 22 6 2.2605 -1.3051 -0.0006 23 6 1.4384 -2.5955 -0.0108 24 6 2.1775 -2.1693 1.2593 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6390 2.0830 -0.1226 29 1 3.8546 3.1329 -0.1686 30 1 6.0343 1.8834 1.1706 31 1 6.2368 1.7229 -0.5905 32 1 4.8404 5.1871 0.8972 33 1 5.3533 3.9482 2.0894 34 1 6.9333 6.3721 1.0599 35 1 6.7393 5.8027 2.7518 36 1 8.9747 5.1307 1.3855 37 1 8.1609 3.8975 2.3946 38 1 11.2552 3.3263 1.4287 39 1 3.2025 -1.3038 -0.5488 40 1 0.3525 -2.5004 -0.0175 41 1 1.8394 -3.4434 -0.5659 42 1 3.0648 -2.7369 1.5397 43 1 1.5778 -1.7938 2.0885 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714611065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:55 Heat of formation + Delta-G solvation = 4.723020 kcal Electronic energy + Delta-G solvation = -21686.098121 eV Core-core repulsion = 18539.091768 eV Total energy + Delta-G solvation = -3147.006353 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93321 -39.46699 -38.48388 -35.65687 -34.42478 -34.27069 -31.49153 -30.58282 -28.75624 -26.74351 -25.71545 -24.05646 -23.20432 -22.12343 -21.64111 -21.20686 -19.62908 -18.74105 -17.91959 -17.37962 -16.81074 -16.32891 -16.29809 -15.79037 -15.62161 -15.13845 -14.69128 -14.24990 -14.07210 -13.91190 -13.86149 -13.65270 -13.40105 -13.11766 -12.97383 -12.88247 -12.66458 -12.47247 -12.17754 -12.07322 -11.87076 -11.74776 -11.64622 -11.48938 -11.41043 -11.30147 -10.69824 -10.52696 -10.09959 -9.67603 -8.88508 -7.90058 -5.27802 0.40925 1.42082 1.45780 1.51453 2.30046 2.34650 2.50732 3.05546 3.29289 3.63171 3.71913 3.89322 3.96595 3.98557 4.04729 4.17716 4.24386 4.28449 4.44980 4.46663 4.53843 4.67768 4.72332 4.75849 4.84877 4.95550 4.96738 4.98197 5.11970 5.14003 5.20478 5.23535 5.27466 5.42225 5.45163 5.46826 5.60262 5.65401 5.69981 5.76285 6.21360 6.73888 7.07256 7.41020 7.74539 8.40273 9.20541 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.003971 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.330406 B = 7050.082176 C = 8010.659570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.000 4.000 3 C -0.235 4.235 4 C 0.527 3.473 5 O -0.587 6.587 6 N -0.707 5.707 7 C 0.133 3.867 8 C 0.148 3.852 9 H 0.051 0.949 10 C -0.111 4.111 11 C -0.133 4.133 12 C 0.173 3.827 13 N -0.612 5.612 14 C -0.243 4.243 15 H 0.075 0.925 16 C -0.059 4.059 17 N -0.946 5.946 18 Si 0.973 3.027 19 H -0.272 1.272 20 H -0.291 1.291 21 H -0.284 1.284 22 C -0.142 4.142 23 C -0.162 4.162 24 C -0.166 4.166 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.164 0.836 29 H 0.415 0.585 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.038 0.962 37 H -0.011 1.011 38 H 0.248 0.752 39 H 0.091 0.909 40 H 0.124 0.876 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.691 -2.111 -1.664 23.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.002 4.002 3 C -0.255 4.255 4 C 0.319 3.681 5 O -0.469 6.469 6 N -0.359 5.359 7 C 0.007 3.993 8 C 0.040 3.960 9 H 0.069 0.931 10 C -0.149 4.149 11 C -0.171 4.171 12 C 0.048 3.952 13 N -0.337 5.337 14 C -0.372 4.372 15 H 0.093 0.907 16 C -0.253 4.253 17 N -0.594 5.594 18 Si 0.801 3.199 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.210 1.210 22 C -0.160 4.160 23 C -0.199 4.199 24 C -0.203 4.203 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.182 0.818 29 H 0.252 0.748 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.007 0.993 38 H 0.057 0.943 39 H 0.109 0.891 40 H 0.142 0.858 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.016 -2.842 -1.483 23.238 hybrid contribution 1.681 -0.378 -0.387 1.766 sum -21.334 -3.220 -1.871 21.657 Atomic orbital electron populations 1.21084 0.87833 1.04611 1.04353 1.22151 0.97189 0.92126 0.88703 1.22474 0.90954 1.00607 1.11478 1.19375 0.89469 0.82876 0.76427 1.90754 1.72517 1.33136 1.50535 1.45777 1.07237 1.11228 1.71699 1.21569 0.79644 0.99465 0.98666 1.21340 0.84240 0.92017 0.98358 0.93123 1.22581 0.97883 0.97486 0.96954 1.22875 0.95069 0.97653 1.01545 1.21279 0.95660 0.91210 0.87054 1.44757 1.00434 1.59812 1.28665 1.19278 0.90229 1.31140 0.96584 0.90694 1.25681 0.99825 1.01713 0.98065 1.70135 1.17517 1.51845 1.19879 0.85249 0.78034 0.78500 0.78162 1.19771 1.21741 1.21009 1.21331 1.00258 0.90376 1.04073 1.23233 0.99931 0.96790 0.99936 1.22807 1.02649 1.02785 0.92076 0.88643 0.89819 0.89217 0.81816 0.74849 0.95206 0.95394 0.87488 0.91876 0.90975 0.89882 0.94374 0.99307 0.94271 0.89066 0.85834 0.88462 0.90289 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.52 71.24 0.68 -0.62 16 2 C 0.00 0.01 5.80 -17.61 -0.10 -0.10 16 3 C -0.23 -5.13 9.62 23.43 0.23 -4.90 16 4 C 0.53 17.04 7.67 86.57 0.66 17.71 16 5 O -0.59 -24.50 13.37 -4.08 -0.05 -24.56 16 6 N -0.71 -21.46 5.28 -466.71 -2.46 -23.93 16 7 C 0.13 5.45 5.05 86.38 0.44 5.88 16 8 C 0.15 5.84 3.26 45.34 0.15 5.99 16 9 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 10 C -0.11 -3.45 5.93 31.79 0.19 -3.26 16 11 C -0.13 -4.67 7.09 31.99 0.23 -4.45 16 12 C 0.17 8.61 5.42 86.86 0.47 9.08 16 13 N -0.61 -31.63 3.13 -668.24 -2.09 -33.72 16 14 C -0.24 -13.94 9.83 84.03 0.83 -13.11 16 15 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 16 C -0.06 -3.46 5.47 84.86 0.46 -2.99 16 17 N -0.95 -58.16 10.55 21.65 0.23 -57.93 16 18 Si 0.97 47.30 29.55 68.60 2.03 49.33 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 22 C -0.14 -3.57 4.27 -11.54 -0.05 -3.62 16 23 C -0.16 -2.89 9.80 30.59 0.30 -2.59 16 24 C -0.17 -3.82 10.23 30.59 0.31 -3.51 16 25 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.08 0.74 6.32 -2.39 -0.02 0.72 16 27 H 0.09 0.68 8.07 -2.39 -0.02 0.67 16 28 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.41 9.08 8.20 -92.71 -0.76 8.32 16 30 H 0.03 1.41 8.13 -2.38 -0.02 1.39 16 31 H 0.03 1.31 8.01 -2.38 -0.02 1.29 16 32 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.06 1.99 7.85 -2.39 -0.02 1.97 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 36 H 0.04 2.13 6.88 -2.39 -0.02 2.11 16 37 H -0.01 -0.62 8.07 -2.39 -0.02 -0.64 16 38 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.09 3.06 6.36 -2.39 -0.02 3.04 16 40 H 0.12 1.48 6.28 -2.38 -0.01 1.47 16 41 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -75.92 345.66 2.67 -73.25 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.23 Total: 18.04 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 4.79 Total: -0.49 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.33 Total: -115.58 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -75.92 2.67 -73.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714611065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.978 kcal (2) G-P(sol) polarization free energy of solvation -75.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds