Wall clock time and date at job start Tue Mar 31 2020 00:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32992 * 119.99845 * 2 1 4 4 C 1.47101 * 120.00340 * 352.85599 * 3 2 1 5 5 O 1.21613 * 119.99631 * 353.33964 * 4 3 2 6 6 N 1.34778 * 120.00027 * 173.33014 * 4 3 2 7 7 C 1.46493 * 119.99653 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46958 * 184.62570 * 7 6 4 9 9 H 1.09003 * 109.99702 * 54.14311 * 8 7 6 10 10 C 1.54318 * 109.88496 * 293.04367 * 8 7 6 11 11 C 1.55275 * 103.01215 * 218.46920 * 10 8 7 12 12 C 1.54907 * 101.52527 * 35.35808 * 11 10 8 13 13 N 1.47019 * 109.88264 * 175.23494 * 8 7 6 14 14 C 1.36942 * 125.64945 * 298.33274 * 13 8 7 15 15 H 1.08000 * 120.00069 * 347.78565 * 14 13 8 16 16 C 1.38819 * 119.99931 * 167.77558 * 14 13 8 17 17 N 1.31618 * 119.99865 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99677 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47044 * 60.00493 * 18 16 14 20 20 H 1.48505 * 109.46624 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46880 * 299.99959 * 18 16 14 22 22 C 1.50701 * 119.99683 * 180.02562 * 2 1 3 23 23 C 1.52993 * 117.50356 * 8.61682 * 22 2 1 24 24 C 1.52997 * 117.49596 * 299.99270 * 22 2 1 25 25 H 1.08995 * 109.47418 * 84.38786 * 1 2 3 26 26 H 1.09004 * 109.47186 * 204.39353 * 1 2 3 27 27 H 1.09001 * 109.46965 * 324.38330 * 1 2 3 28 28 H 1.08000 * 119.99736 * 172.86573 * 3 2 1 29 29 H 0.97003 * 119.99713 * 0.02562 * 6 4 3 30 30 H 1.09003 * 109.47426 * 64.62747 * 7 6 4 31 31 H 1.08997 * 109.47494 * 304.62627 * 7 6 4 32 32 H 1.08999 * 110.71914 * 336.75329 * 10 8 7 33 33 H 1.08997 * 110.72268 * 100.02260 * 10 8 7 34 34 H 1.09003 * 110.95420 * 277.33974 * 11 10 8 35 35 H 1.08996 * 111.10213 * 153.45147 * 11 10 8 36 36 H 1.09001 * 110.36832 * 204.23721 * 12 11 10 37 37 H 1.08997 * 110.36839 * 82.02633 * 12 11 10 38 38 H 0.97000 * 119.99534 * 179.97438 * 17 16 14 39 39 H 1.09003 * 115.54754 * 154.32881 * 22 2 1 40 40 H 1.09007 * 117.49600 * 359.97438 * 23 22 2 41 41 H 1.08997 * 117.49923 * 145.02038 * 23 22 2 42 42 H 1.09008 * 117.50064 * 214.97880 * 24 22 2 43 43 H 1.08993 * 117.50522 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4451 2.4208 -0.1584 5 8 0.2553 2.4126 -0.4102 6 7 2.0976 3.5924 -0.0244 7 6 1.3735 4.8562 -0.1816 8 6 2.3595 6.0230 -0.0960 9 1 3.1656 5.8834 -0.8164 10 6 2.9407 6.1154 1.3306 11 6 3.0205 7.6464 1.5770 12 6 1.7596 8.1465 0.8290 13 7 1.6614 7.2884 -0.3657 14 6 1.0257 7.6160 -1.5336 15 1 1.1729 7.0116 -2.4165 16 6 0.1919 8.7248 -1.5826 17 7 0.0127 9.4615 -0.5067 18 14 -0.6758 9.1712 -3.1755 19 1 -1.5497 8.0464 -3.5951 20 1 -1.5008 10.3880 -2.9654 21 1 0.3339 9.4346 -4.2321 22 6 2.2605 -1.3052 -0.0006 23 6 1.4517 -2.5877 -0.2045 24 6 2.0261 -2.2566 1.1744 25 1 -0.3634 0.1005 -1.0227 26 1 -0.3634 -0.9360 0.4244 27 1 -0.3633 0.8354 0.5985 28 1 3.2457 1.1554 0.1162 29 1 3.0466 3.5988 0.1762 30 1 0.6300 4.9499 0.6100 31 1 0.8757 4.8716 -1.1512 32 1 2.2713 5.6451 2.0509 33 1 3.9323 5.6651 1.3730 34 1 3.9265 8.0651 1.1387 35 1 2.9607 7.8763 2.6408 36 1 1.8801 9.1899 0.5377 37 1 0.8752 8.0279 1.4549 38 1 -0.5696 10.2364 -0.5410 39 1 3.2631 -1.2689 -0.4266 40 1 0.3745 -2.4876 -0.3378 41 1 1.9221 -3.3956 -0.7649 42 1 2.8744 -2.8468 1.5211 43 1 1.3273 -1.9385 1.9480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714611066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:59 Heat of formation + Delta-G solvation = 23.673486 kcal Electronic energy + Delta-G solvation = -21478.230914 eV Core-core repulsion = 18332.046316 eV Total energy + Delta-G solvation = -3146.184599 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.67696 -38.19613 -37.48728 -34.27607 -33.13161 -32.45856 -29.76168 -28.92144 -27.47162 -25.08605 -24.36017 -23.12646 -22.65450 -20.53526 -20.03920 -19.56550 -18.49098 -16.99725 -16.57385 -16.29030 -15.47565 -14.95189 -14.73186 -14.62715 -14.08138 -13.84586 -13.35696 -13.23417 -12.92918 -12.65243 -12.09828 -12.04870 -11.85721 -11.75680 -11.68546 -11.47148 -11.28638 -11.12352 -10.93617 -10.76161 -10.72166 -10.18525 -10.11576 -9.87008 -9.81514 -9.67699 -9.30895 -9.03205 -8.60946 -8.45210 -6.83902 -5.73890 -3.10473 1.35762 3.41840 3.43023 3.46755 3.47820 3.58080 3.71360 4.38126 4.52130 4.56367 4.64513 4.81462 5.01315 5.26244 5.30338 5.36130 5.42295 5.49805 5.52925 5.60414 5.64553 5.75514 5.78118 5.83098 5.87539 6.03607 6.09839 6.17737 6.26037 6.46239 6.48191 6.49716 6.59171 6.65901 6.78117 6.86833 7.10262 7.54752 7.61088 7.81257 7.92215 8.27883 8.61203 9.19571 9.80129 10.46678 11.37270 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.003546 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.285575 B = 7895.016829 C = 8769.976751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.009 4.009 3 C -0.221 4.221 4 C 0.537 3.463 5 O -0.543 6.543 6 N -0.720 5.720 7 C 0.110 3.890 8 C 0.152 3.848 9 H 0.037 0.963 10 C -0.127 4.127 11 C -0.148 4.148 12 C 0.170 3.830 13 N -0.590 5.590 14 C -0.232 4.232 15 H 0.076 0.924 16 C -0.003 4.003 17 N -0.918 5.918 18 Si 0.911 3.089 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.284 1.284 22 C -0.131 4.131 23 C -0.173 4.173 24 C -0.168 4.168 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.124 0.876 29 H 0.395 0.605 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.023 0.977 38 H 0.254 0.746 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.529 -19.153 4.524 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.011 4.011 3 C -0.242 4.242 4 C 0.326 3.674 5 O -0.424 6.424 6 N -0.370 5.370 7 C -0.015 4.015 8 C 0.043 3.957 9 H 0.055 0.945 10 C -0.165 4.165 11 C -0.187 4.187 12 C 0.046 3.954 13 N -0.314 5.314 14 C -0.361 4.361 15 H 0.093 0.907 16 C -0.200 4.200 17 N -0.564 5.564 18 Si 0.741 3.259 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.211 1.211 22 C -0.149 4.149 23 C -0.210 4.210 24 C -0.205 4.205 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.141 0.859 29 H 0.228 0.772 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.511 -18.895 4.264 20.435 hybrid contribution 0.071 0.262 -0.729 0.778 sum 6.582 -18.633 3.535 20.075 Atomic orbital electron populations 1.21144 0.90823 1.02154 1.03807 1.21731 0.96142 0.92214 0.91054 1.22366 1.00162 0.92189 1.09524 1.18499 0.87033 0.84252 0.77620 1.90763 1.15277 1.87654 1.48660 1.46042 1.12926 1.06316 1.71762 1.22195 0.95936 0.81177 1.02232 1.21122 0.93205 0.87045 0.94297 0.94507 1.22638 0.99447 0.97537 0.96868 1.23026 1.00996 0.95044 0.99650 1.21501 0.91367 0.96232 0.86343 1.44488 1.63403 1.10426 1.13086 1.18961 1.20100 1.09807 0.87203 0.90654 1.24877 0.98923 0.98689 0.97478 1.69926 1.40874 1.18626 1.26978 0.86211 0.79494 0.77618 0.82538 1.20952 1.21561 1.21087 1.21271 1.00118 0.88858 1.04638 1.23065 1.00571 0.97715 0.99634 1.22979 1.03678 1.02087 0.91750 0.90239 0.92932 0.89051 0.85851 0.77191 0.92141 0.91205 0.91846 0.92401 0.92323 0.92341 0.90476 0.95860 0.93585 0.86705 0.87970 0.88365 0.88322 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 7.90 36.01 0.28 -1.24 16 2 C -0.01 -0.11 5.81 -101.17 -0.59 -0.70 16 3 C -0.22 -2.72 9.67 -37.81 -0.37 -3.09 16 4 C 0.54 8.73 7.60 -12.66 -0.10 8.63 16 5 O -0.54 -10.80 13.30 5.27 0.07 -10.73 16 6 N -0.72 -11.24 5.40 -61.49 -0.33 -11.57 16 7 C 0.11 2.17 5.10 -4.04 -0.02 2.15 16 8 C 0.15 3.04 3.22 -66.96 -0.22 2.83 16 9 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 10 C -0.13 -2.13 6.09 -24.84 -0.15 -2.28 16 11 C -0.15 -2.74 7.10 -24.52 -0.17 -2.91 16 12 C 0.17 4.10 5.45 -2.53 -0.01 4.08 16 13 N -0.59 -14.82 3.13 -162.57 -0.51 -15.33 16 14 C -0.23 -6.46 9.73 -15.05 -0.15 -6.60 16 15 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 16 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 17 N -0.92 -26.91 10.48 55.49 0.58 -26.33 16 18 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 C -0.13 -1.13 6.01 -91.78 -0.55 -1.68 16 23 C -0.17 -1.27 9.76 -26.74 -0.26 -1.53 16 24 C -0.17 -1.21 10.10 -26.73 -0.27 -1.48 16 25 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 26 H 0.05 0.52 6.30 -51.93 -0.33 0.19 16 27 H 0.09 1.36 6.16 -51.93 -0.32 1.04 16 28 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 29 H 0.39 4.91 8.24 -40.82 -0.34 4.58 16 30 H 0.06 1.31 8.03 -51.93 -0.42 0.90 16 31 H 0.07 1.59 7.85 -51.93 -0.41 1.18 16 32 H 0.06 1.05 7.77 -51.93 -0.40 0.65 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 2.07 6.75 -51.93 -0.35 1.71 16 37 H 0.02 0.61 8.11 -51.93 -0.42 0.19 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 0.77 6.42 -51.92 -0.33 0.43 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -31.65 345.18 -9.76 -41.41 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.08 Total: 4.01 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.66 Total: -3.99 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.26 Total: -53.24 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.07 Total: -10.73 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.65 -9.76 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714611066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.081 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds