Wall clock time and date at job start Tue Mar 31 2020 00:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32992 * 119.99845 * 2 1 4 4 C 1.47101 * 120.00340 * 352.85599 * 3 2 1 5 5 O 1.21613 * 119.99631 * 353.33964 * 4 3 2 6 6 N 1.34778 * 120.00027 * 173.33014 * 4 3 2 7 7 C 1.46493 * 119.99653 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46958 * 184.62570 * 7 6 4 9 9 H 1.09003 * 109.99702 * 54.14311 * 8 7 6 10 10 C 1.54318 * 109.88496 * 293.04367 * 8 7 6 11 11 C 1.55275 * 103.01215 * 218.46920 * 10 8 7 12 12 C 1.54907 * 101.52527 * 35.35808 * 11 10 8 13 13 N 1.47019 * 109.88264 * 175.23494 * 8 7 6 14 14 C 1.36942 * 125.64945 * 298.33274 * 13 8 7 15 15 H 1.08000 * 120.00069 * 347.78565 * 14 13 8 16 16 C 1.38819 * 119.99931 * 167.77558 * 14 13 8 17 17 N 1.31618 * 119.99865 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99677 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47044 * 60.00493 * 18 16 14 20 20 H 1.48505 * 109.46624 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46880 * 299.99959 * 18 16 14 22 22 C 1.50701 * 119.99683 * 180.02562 * 2 1 3 23 23 C 1.52993 * 117.50356 * 8.61682 * 22 2 1 24 24 C 1.52997 * 117.49596 * 299.99270 * 22 2 1 25 25 H 1.08995 * 109.47418 * 84.38786 * 1 2 3 26 26 H 1.09004 * 109.47186 * 204.39353 * 1 2 3 27 27 H 1.09001 * 109.46965 * 324.38330 * 1 2 3 28 28 H 1.08000 * 119.99736 * 172.86573 * 3 2 1 29 29 H 0.97003 * 119.99713 * 0.02562 * 6 4 3 30 30 H 1.09003 * 109.47426 * 64.62747 * 7 6 4 31 31 H 1.08997 * 109.47494 * 304.62627 * 7 6 4 32 32 H 1.08999 * 110.71914 * 336.75329 * 10 8 7 33 33 H 1.08997 * 110.72268 * 100.02260 * 10 8 7 34 34 H 1.09003 * 110.95420 * 277.33974 * 11 10 8 35 35 H 1.08996 * 111.10213 * 153.45147 * 11 10 8 36 36 H 1.09001 * 110.36832 * 204.23721 * 12 11 10 37 37 H 1.08997 * 110.36839 * 82.02633 * 12 11 10 38 38 H 0.97000 * 119.99534 * 179.97438 * 17 16 14 39 39 H 1.09003 * 115.54754 * 154.32881 * 22 2 1 40 40 H 1.09007 * 117.49600 * 359.97438 * 23 22 2 41 41 H 1.08997 * 117.49923 * 145.02038 * 23 22 2 42 42 H 1.09008 * 117.50064 * 214.97880 * 24 22 2 43 43 H 1.08993 * 117.50522 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4451 2.4208 -0.1584 5 8 0.2553 2.4126 -0.4102 6 7 2.0976 3.5924 -0.0244 7 6 1.3735 4.8562 -0.1816 8 6 2.3595 6.0230 -0.0960 9 1 3.1656 5.8834 -0.8164 10 6 2.9407 6.1154 1.3306 11 6 3.0205 7.6464 1.5770 12 6 1.7596 8.1465 0.8290 13 7 1.6614 7.2884 -0.3657 14 6 1.0257 7.6160 -1.5336 15 1 1.1729 7.0116 -2.4165 16 6 0.1919 8.7248 -1.5826 17 7 0.0127 9.4615 -0.5067 18 14 -0.6758 9.1712 -3.1755 19 1 -1.5497 8.0464 -3.5951 20 1 -1.5008 10.3880 -2.9654 21 1 0.3339 9.4346 -4.2321 22 6 2.2605 -1.3052 -0.0006 23 6 1.4517 -2.5877 -0.2045 24 6 2.0261 -2.2566 1.1744 25 1 -0.3634 0.1005 -1.0227 26 1 -0.3634 -0.9360 0.4244 27 1 -0.3633 0.8354 0.5985 28 1 3.2457 1.1554 0.1162 29 1 3.0466 3.5988 0.1762 30 1 0.6300 4.9499 0.6100 31 1 0.8757 4.8716 -1.1512 32 1 2.2713 5.6451 2.0509 33 1 3.9323 5.6651 1.3730 34 1 3.9265 8.0651 1.1387 35 1 2.9607 7.8763 2.6408 36 1 1.8801 9.1899 0.5377 37 1 0.8752 8.0279 1.4549 38 1 -0.5696 10.2364 -0.5410 39 1 3.2631 -1.2689 -0.4266 40 1 0.3745 -2.4876 -0.3378 41 1 1.9221 -3.3956 -0.7649 42 1 2.8744 -2.8468 1.5211 43 1 1.3273 -1.9385 1.9480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714611066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:58 Heat of formation + Delta-G solvation = 4.081669 kcal Electronic energy + Delta-G solvation = -21479.080479 eV Core-core repulsion = 18332.046316 eV Total energy + Delta-G solvation = -3147.034164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95233 -39.44629 -38.68707 -35.78184 -34.40839 -34.08920 -31.49061 -30.60637 -28.61595 -26.76770 -25.94702 -24.33361 -23.18662 -22.08626 -21.45812 -21.16582 -19.53505 -18.74181 -17.86971 -17.38369 -16.98100 -16.36240 -16.23868 -15.84140 -15.67479 -15.33242 -14.73479 -14.43434 -14.08608 -13.85858 -13.84380 -13.63872 -13.37983 -13.03000 -12.88503 -12.85228 -12.67383 -12.45138 -12.21227 -12.07157 -11.85411 -11.82619 -11.67745 -11.46149 -11.40668 -11.31347 -10.70950 -10.61280 -10.16027 -9.70337 -8.88815 -7.88801 -5.26511 0.36257 1.42446 1.46128 1.51791 2.26470 2.29703 2.50242 3.03644 3.29464 3.56944 3.76942 3.88835 3.94292 3.98264 3.99811 4.14882 4.18080 4.26248 4.33817 4.43768 4.54731 4.67830 4.72894 4.75040 4.83504 4.96403 4.99247 5.01476 5.11144 5.14308 5.16967 5.22337 5.27875 5.40154 5.45885 5.52976 5.58137 5.60158 5.66830 5.77719 6.22339 6.69843 7.07966 7.36181 7.75255 8.40209 9.20943 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.003546 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.285575 B = 7895.016829 C = 8769.976751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.001 3.999 3 C -0.231 4.231 4 C 0.530 3.470 5 O -0.590 6.590 6 N -0.706 5.706 7 C 0.131 3.869 8 C 0.148 3.852 9 H 0.049 0.951 10 C -0.113 4.113 11 C -0.133 4.133 12 C 0.171 3.829 13 N -0.612 5.612 14 C -0.241 4.241 15 H 0.074 0.926 16 C -0.061 4.061 17 N -0.946 5.946 18 Si 0.973 3.027 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.273 1.273 22 C -0.142 4.142 23 C -0.172 4.172 24 C -0.158 4.158 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.160 0.840 29 H 0.415 0.585 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.041 0.959 37 H -0.011 1.011 38 H 0.248 0.752 39 H 0.133 0.867 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.190 -21.810 4.955 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.001 4.001 3 C -0.251 4.251 4 C 0.321 3.679 5 O -0.473 6.473 6 N -0.358 5.358 7 C 0.004 3.996 8 C 0.041 3.959 9 H 0.067 0.933 10 C -0.150 4.150 11 C -0.171 4.171 12 C 0.046 3.954 13 N -0.337 5.337 14 C -0.370 4.370 15 H 0.092 0.908 16 C -0.254 4.254 17 N -0.594 5.594 18 Si 0.801 3.199 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.199 1.199 22 C -0.160 4.160 23 C -0.208 4.208 24 C -0.195 4.195 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.177 0.823 29 H 0.252 0.748 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.007 0.993 38 H 0.057 0.943 39 H 0.150 0.850 40 H 0.115 0.885 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.234 -21.588 4.705 23.947 hybrid contribution -0.799 0.980 -0.859 1.528 sum 8.434 -20.609 3.846 22.597 Atomic orbital electron populations 1.21064 0.92188 1.02161 1.02490 1.21995 0.95539 0.93702 0.88895 1.22344 1.01544 0.89945 1.11298 1.19260 0.86698 0.85513 0.76440 1.90754 1.17533 1.88329 1.50677 1.45759 1.13674 1.04727 1.71641 1.21620 0.95546 0.83398 0.98998 1.21334 0.92712 0.84817 0.97068 0.93285 1.22627 1.01773 0.96544 0.94089 1.22892 0.97998 0.95912 1.00333 1.21324 0.93099 0.94711 0.86264 1.44763 1.63389 1.12929 1.12593 1.19266 1.19890 1.09431 0.88435 0.90775 1.25657 1.00151 0.99085 1.00517 1.70136 1.41617 1.18943 1.28709 0.85246 0.78427 0.76921 0.79337 1.21009 1.21725 1.19869 1.21322 1.00728 0.87514 1.06448 1.23173 1.00320 0.97277 1.00065 1.23076 1.04103 1.01030 0.91296 0.91709 0.90509 0.92012 0.82269 0.74795 0.94856 0.95157 0.91595 0.87565 0.91120 0.89794 0.94050 0.99272 0.94272 0.84963 0.88545 0.86616 0.86319 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 7.90 71.24 0.56 -2.46 16 2 C 0.00 0.01 5.81 -17.61 -0.10 -0.09 16 3 C -0.23 -5.20 9.67 23.43 0.23 -4.97 16 4 C 0.53 17.08 7.60 86.57 0.66 17.73 16 5 O -0.59 -24.41 13.30 -4.07 -0.05 -24.46 16 6 N -0.71 -21.35 5.40 -466.72 -2.52 -23.87 16 7 C 0.13 5.29 5.10 86.38 0.44 5.73 16 8 C 0.15 5.82 3.22 45.34 0.15 5.96 16 9 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 10 C -0.11 -3.44 6.09 31.82 0.19 -3.25 16 11 C -0.13 -4.63 7.10 32.03 0.23 -4.40 16 12 C 0.17 8.45 5.45 86.85 0.47 8.92 16 13 N -0.61 -31.48 3.13 -668.26 -2.09 -33.57 16 14 C -0.24 -13.80 9.73 84.03 0.82 -12.99 16 15 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 16 C -0.06 -3.53 5.47 84.86 0.46 -3.07 16 17 N -0.95 -57.90 10.48 21.65 0.23 -57.68 16 18 Si 0.97 47.32 29.55 68.60 2.03 49.35 16 19 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 22 C -0.14 -1.98 6.01 -11.54 -0.07 -2.05 16 23 C -0.17 -1.98 9.76 30.59 0.30 -1.68 16 24 C -0.16 -1.73 10.10 30.59 0.31 -1.42 16 25 H 0.06 1.78 8.03 -2.39 -0.02 1.76 16 26 H 0.08 1.45 6.30 -2.38 -0.02 1.43 16 27 H 0.06 1.91 6.16 -2.39 -0.01 1.90 16 28 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 29 H 0.42 9.09 8.24 -92.71 -0.76 8.33 16 30 H 0.03 1.51 8.03 -2.39 -0.02 1.49 16 31 H 0.03 1.45 7.85 -2.39 -0.02 1.43 16 32 H 0.07 2.02 7.77 -2.39 -0.02 2.00 16 33 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.04 2.31 6.75 -2.39 -0.02 2.29 16 37 H -0.01 -0.59 8.11 -2.39 -0.02 -0.61 16 38 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.23 6.42 -2.38 -0.02 1.21 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -74.09 345.18 2.46 -71.62 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.23 Total: 16.63 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 4.65 Total: 1.97 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -4.38 Total: -115.11 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -74.09 2.46 -71.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714611066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.706 kcal (2) G-P(sol) polarization free energy of solvation -74.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds