Wall clock time and date at job start Tue Mar 31 2020 00:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.32997 * 120.00034 * 2 1 4 4 C 1.47098 * 119.99971 * 3.39853 * 3 2 1 5 5 O 1.21612 * 120.00034 * 5.48598 * 4 3 2 6 6 N 1.34775 * 119.99958 * 185.48162 * 4 3 2 7 7 C 1.46502 * 120.00118 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47597 * 173.29182 * 7 6 4 9 9 H 1.09007 * 109.87038 * 57.43054 * 8 7 6 10 10 C 1.54315 * 109.88496 * 178.44621 * 8 7 6 11 11 C 1.55161 * 102.94241 * 141.61327 * 10 8 7 12 12 C 1.54909 * 101.57990 * 324.49814 * 11 10 8 13 13 N 1.47027 * 109.88051 * 296.25893 * 8 7 6 14 14 C 1.36932 * 125.64899 * 61.62042 * 13 8 7 15 15 H 1.08003 * 119.99991 * 324.07647 * 14 13 8 16 16 C 1.38817 * 120.00049 * 144.08169 * 14 13 8 17 17 N 1.31614 * 119.99971 * 163.41613 * 16 14 13 18 18 Si 1.86800 * 120.00032 * 343.41821 * 16 14 13 19 19 H 1.48496 * 109.47140 * 92.76864 * 18 16 14 20 20 H 1.48495 * 109.47243 * 212.77126 * 18 16 14 21 21 H 1.48501 * 109.46705 * 332.77013 * 18 16 14 22 22 C 1.50701 * 120.00199 * 180.02562 * 2 1 3 23 23 C 1.53001 * 117.49725 * 14.82280 * 22 2 1 24 24 C 1.52998 * 117.49622 * 306.16334 * 22 2 1 25 25 H 1.08999 * 109.47624 * 57.78938 * 1 2 3 26 26 H 1.09003 * 109.47339 * 177.79371 * 1 2 3 27 27 H 1.09005 * 109.47168 * 297.78566 * 1 2 3 28 28 H 1.08005 * 120.00094 * 183.39987 * 3 2 1 29 29 H 0.96997 * 120.00032 * 0.02562 * 6 4 3 30 30 H 1.09004 * 109.46790 * 53.28989 * 7 6 4 31 31 H 1.09001 * 109.47598 * 293.29864 * 7 6 4 32 32 H 1.09002 * 110.72635 * 259.97297 * 10 8 7 33 33 H 1.09000 * 110.72459 * 23.25329 * 10 8 7 34 34 H 1.09001 * 111.00711 * 82.57064 * 11 10 8 35 35 H 1.09000 * 111.00320 * 206.42463 * 11 10 8 36 36 H 1.08997 * 110.36698 * 155.84768 * 12 11 10 37 37 H 1.09002 * 110.36459 * 278.06135 * 12 11 10 38 38 H 0.96998 * 119.99980 * 179.97438 * 17 16 14 39 39 H 1.09004 * 115.55131 * 160.49416 * 22 2 1 40 40 H 1.08999 * 117.50081 * 359.97438 * 23 22 2 41 41 H 1.09001 * 117.49984 * 145.02413 * 23 22 2 42 42 H 1.09005 * 117.50110 * 214.97945 * 24 22 2 43 43 H 1.09003 * 117.50301 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4384 2.4246 0.0755 5 8 0.2332 2.4231 0.2383 6 7 2.1019 3.5924 -0.0356 7 6 1.3713 4.8600 0.0390 8 6 2.3663 6.0222 0.0534 9 1 2.9981 5.9800 -0.8339 10 6 1.6054 7.3641 0.0926 11 6 2.4762 8.2298 1.0411 12 6 2.9673 7.1739 2.0627 13 7 3.1959 5.9551 1.2654 14 6 4.0407 4.9302 1.5986 15 1 3.7739 3.9112 1.3599 16 6 5.2400 5.2009 2.2431 17 7 5.8934 4.2335 2.8508 18 14 5.9263 6.9383 2.2479 19 1 5.4648 7.6494 3.4671 20 1 7.4103 6.8843 2.2382 21 1 5.4493 7.6622 1.0422 22 6 2.2605 -1.3051 -0.0006 23 6 1.4775 -2.5727 -0.3484 24 6 1.9201 -2.3177 1.0946 25 1 -0.3634 0.5478 -0.8695 26 1 -0.3634 -1.0269 -0.0396 27 1 -0.3634 0.4791 0.9092 28 1 3.2505 1.1526 -0.0555 29 1 3.0631 3.5936 -0.1658 30 1 0.7738 4.8819 0.9505 31 1 0.7160 4.9534 -0.8270 32 1 1.5577 7.8097 -0.9010 33 1 0.6051 7.2285 0.5040 34 1 3.3148 8.6741 0.5049 35 1 1.8765 8.9974 1.5303 36 1 3.8960 7.5013 2.5299 37 1 2.2043 6.9958 2.8206 38 1 6.7316 4.4226 3.3008 39 1 3.2983 -1.2486 -0.3289 40 1 0.4173 -2.4628 -0.5763 41 1 2.0003 -3.3504 -0.9051 42 1 2.7340 -2.9278 1.4866 43 1 1.1515 -2.0399 1.8159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714611067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:04 Heat of formation + Delta-G solvation = 31.448425 kcal Electronic energy + Delta-G solvation = -22021.882974 eV Core-core repulsion = 18876.035522 eV Total energy + Delta-G solvation = -3145.847452 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.45176 -38.19766 -37.52510 -34.02490 -32.86185 -32.64994 -29.98563 -29.61099 -27.42524 -25.15505 -24.16702 -22.97183 -22.43194 -20.93567 -19.88966 -19.59566 -18.29936 -17.05333 -16.39499 -16.20926 -15.84250 -14.86345 -14.76055 -14.53706 -14.27572 -13.62882 -13.17703 -13.03632 -12.80841 -12.74172 -12.46195 -12.17922 -11.92544 -11.90259 -11.44305 -11.33784 -11.28782 -11.15207 -10.89198 -10.87231 -10.68245 -10.48566 -10.45499 -10.19565 -9.84337 -9.55249 -9.06884 -8.75646 -8.60207 -8.17644 -6.85538 -6.03285 -3.48646 1.66513 3.28708 3.42332 3.47433 3.71003 3.84308 4.03300 4.47863 4.66585 4.82496 4.92745 4.93550 5.04316 5.13300 5.26557 5.33196 5.45044 5.48765 5.53144 5.64290 5.77757 5.84374 5.87210 5.95972 6.02880 6.04575 6.07380 6.11478 6.12774 6.26430 6.31543 6.36648 6.39934 6.56980 6.75910 6.76890 6.84151 6.87812 7.17300 7.85553 8.24928 8.29524 8.76733 8.89246 9.60816 10.19905 11.10986 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.004714 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.747720 B = 5938.203643 C = 7104.342977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.020 4.020 3 C -0.209 4.209 4 C 0.541 3.459 5 O -0.563 6.563 6 N -0.704 5.704 7 C 0.118 3.882 8 C 0.143 3.857 9 H 0.048 0.952 10 C -0.121 4.121 11 C -0.136 4.136 12 C 0.116 3.884 13 N -0.601 5.601 14 C -0.256 4.256 15 H 0.092 0.908 16 C 0.034 3.966 17 N -0.903 5.903 18 Si 0.892 3.108 19 H -0.287 1.287 20 H -0.304 1.304 21 H -0.269 1.269 22 C -0.126 4.126 23 C -0.178 4.178 24 C -0.166 4.166 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.126 0.874 29 H 0.412 0.588 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.031 0.969 38 H 0.264 0.736 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.639 -5.113 -7.219 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.022 4.022 3 C -0.230 4.230 4 C 0.331 3.669 5 O -0.445 6.445 6 N -0.355 5.355 7 C -0.008 4.008 8 C 0.036 3.964 9 H 0.065 0.935 10 C -0.160 4.160 11 C -0.174 4.174 12 C -0.008 4.008 13 N -0.328 5.328 14 C -0.383 4.383 15 H 0.110 0.890 16 C -0.167 4.167 17 N -0.544 5.544 18 Si 0.724 3.276 19 H -0.216 1.216 20 H -0.233 1.233 21 H -0.194 1.194 22 C -0.144 4.144 23 C -0.214 4.214 24 C -0.202 4.202 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.144 0.856 29 H 0.251 0.749 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.242 -5.202 -6.992 11.995 hybrid contribution 1.224 1.027 0.208 1.611 sum -7.017 -4.175 -6.784 10.616 Atomic orbital electron populations 1.21011 0.91032 1.00502 1.04356 1.21637 0.95891 0.92234 0.92454 1.22427 1.00429 0.92025 1.08124 1.18442 0.87029 0.84543 0.76910 1.90695 1.14601 1.88025 1.51181 1.46109 1.12450 1.05166 1.71813 1.21872 0.94898 0.83606 1.00459 1.21282 0.91695 0.91857 0.91580 0.93473 1.22488 0.98704 0.95323 0.99442 1.22779 0.99176 0.97485 0.97994 1.21902 0.97905 0.87379 0.93601 1.44680 1.49344 1.20753 1.17987 1.18701 0.95875 0.86878 1.36874 0.89038 1.25440 0.95952 0.97061 0.98262 1.69796 1.17249 1.32282 1.35104 0.86687 0.76748 0.85971 0.78244 1.21561 1.23274 1.19436 1.21243 0.99565 0.88361 1.05258 1.23097 1.01054 0.98633 0.98647 1.22970 1.03787 1.01576 0.91913 0.90561 0.93212 0.89679 0.85567 0.74928 0.91817 0.93112 0.91433 0.91276 0.91611 0.91562 0.94110 0.95138 0.92601 0.86756 0.88085 0.88556 0.88301 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 8.09 36.00 0.29 -1.31 16 2 C -0.02 -0.29 5.83 -101.17 -0.59 -0.88 16 3 C -0.21 -3.48 9.67 -37.81 -0.37 -3.84 16 4 C 0.54 10.40 7.71 -12.67 -0.10 10.31 16 5 O -0.56 -11.76 13.13 5.27 0.07 -11.69 16 6 N -0.70 -13.50 4.33 -61.49 -0.27 -13.77 16 7 C 0.12 2.18 5.16 -4.04 -0.02 2.16 16 8 C 0.14 2.68 3.31 -66.96 -0.22 2.46 16 9 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 10 C -0.12 -1.87 6.48 -24.90 -0.16 -2.03 16 11 C -0.14 -2.28 7.09 -24.58 -0.17 -2.45 16 12 C 0.12 2.47 6.22 -2.53 -0.02 2.45 16 13 N -0.60 -13.77 2.68 -162.57 -0.44 -14.20 16 14 C -0.26 -6.76 9.51 -15.06 -0.14 -6.90 16 15 H 0.09 2.50 5.50 -52.48 -0.29 2.21 16 16 C 0.03 0.94 5.46 -17.43 -0.10 0.85 16 17 N -0.90 -26.73 13.97 55.49 0.78 -25.96 16 18 Si 0.89 22.06 24.80 -169.99 -4.22 17.84 16 19 H -0.29 -7.06 6.79 56.52 0.38 -6.67 16 20 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 21 H -0.27 -6.44 7.05 56.52 0.40 -6.05 16 22 C -0.13 -1.51 6.00 -91.77 -0.55 -2.06 16 23 C -0.18 -1.71 9.82 -26.69 -0.26 -1.97 16 24 C -0.17 -1.74 10.13 -26.69 -0.27 -2.01 16 25 H 0.08 1.15 7.45 -51.93 -0.39 0.76 16 26 H 0.05 0.57 5.60 -51.93 -0.29 0.28 16 27 H 0.08 1.38 7.02 -51.93 -0.36 1.01 16 28 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 29 H 0.41 8.06 6.28 -40.82 -0.26 7.80 16 30 H 0.06 1.30 8.11 -51.93 -0.42 0.88 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.94 3.10 -51.93 -0.16 0.78 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.10 0.94 6.13 -51.93 -0.32 0.62 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -30.75 335.15 -8.40 -39.15 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.70 Total: 8.81 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.68 Total: -5.24 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.07 Total: -53.93 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.07 Total: -11.69 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.22 Total: 17.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.75 -8.40 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714611067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.603 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds