Wall clock time and date at job start Tue Mar 31 2020 00:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.32997 * 120.00034 * 2 1 4 4 C 1.47098 * 119.99971 * 3.39853 * 3 2 1 5 5 O 1.21612 * 120.00034 * 5.48598 * 4 3 2 6 6 N 1.34775 * 119.99958 * 185.48162 * 4 3 2 7 7 C 1.46502 * 120.00118 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47597 * 173.29182 * 7 6 4 9 9 H 1.09007 * 109.87038 * 57.43054 * 8 7 6 10 10 C 1.54315 * 109.88496 * 178.44621 * 8 7 6 11 11 C 1.55161 * 102.94241 * 141.61327 * 10 8 7 12 12 C 1.54909 * 101.57990 * 324.49814 * 11 10 8 13 13 N 1.47027 * 109.88051 * 296.25893 * 8 7 6 14 14 C 1.36932 * 125.64899 * 61.62042 * 13 8 7 15 15 H 1.08003 * 119.99991 * 324.07647 * 14 13 8 16 16 C 1.38817 * 120.00049 * 144.08169 * 14 13 8 17 17 N 1.31614 * 119.99971 * 163.41613 * 16 14 13 18 18 Si 1.86800 * 120.00032 * 343.41821 * 16 14 13 19 19 H 1.48496 * 109.47140 * 92.76864 * 18 16 14 20 20 H 1.48495 * 109.47243 * 212.77126 * 18 16 14 21 21 H 1.48501 * 109.46705 * 332.77013 * 18 16 14 22 22 C 1.50701 * 120.00199 * 180.02562 * 2 1 3 23 23 C 1.53001 * 117.49725 * 14.82280 * 22 2 1 24 24 C 1.52998 * 117.49622 * 306.16334 * 22 2 1 25 25 H 1.08999 * 109.47624 * 57.78938 * 1 2 3 26 26 H 1.09003 * 109.47339 * 177.79371 * 1 2 3 27 27 H 1.09005 * 109.47168 * 297.78566 * 1 2 3 28 28 H 1.08005 * 120.00094 * 183.39987 * 3 2 1 29 29 H 0.96997 * 120.00032 * 0.02562 * 6 4 3 30 30 H 1.09004 * 109.46790 * 53.28989 * 7 6 4 31 31 H 1.09001 * 109.47598 * 293.29864 * 7 6 4 32 32 H 1.09002 * 110.72635 * 259.97297 * 10 8 7 33 33 H 1.09000 * 110.72459 * 23.25329 * 10 8 7 34 34 H 1.09001 * 111.00711 * 82.57064 * 11 10 8 35 35 H 1.09000 * 111.00320 * 206.42463 * 11 10 8 36 36 H 1.08997 * 110.36698 * 155.84768 * 12 11 10 37 37 H 1.09002 * 110.36459 * 278.06135 * 12 11 10 38 38 H 0.96998 * 119.99980 * 179.97438 * 17 16 14 39 39 H 1.09004 * 115.55131 * 160.49416 * 22 2 1 40 40 H 1.08999 * 117.50081 * 359.97438 * 23 22 2 41 41 H 1.09001 * 117.49984 * 145.02413 * 23 22 2 42 42 H 1.09005 * 117.50110 * 214.97945 * 24 22 2 43 43 H 1.09003 * 117.50301 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4384 2.4246 0.0755 5 8 0.2332 2.4231 0.2383 6 7 2.1019 3.5924 -0.0356 7 6 1.3713 4.8600 0.0390 8 6 2.3663 6.0222 0.0534 9 1 2.9981 5.9800 -0.8339 10 6 1.6054 7.3641 0.0926 11 6 2.4762 8.2298 1.0411 12 6 2.9673 7.1739 2.0627 13 7 3.1959 5.9551 1.2654 14 6 4.0407 4.9302 1.5986 15 1 3.7739 3.9112 1.3599 16 6 5.2400 5.2009 2.2431 17 7 5.8934 4.2335 2.8508 18 14 5.9263 6.9383 2.2479 19 1 5.4648 7.6494 3.4671 20 1 7.4103 6.8843 2.2382 21 1 5.4493 7.6622 1.0422 22 6 2.2605 -1.3051 -0.0006 23 6 1.4775 -2.5727 -0.3484 24 6 1.9201 -2.3177 1.0946 25 1 -0.3634 0.5478 -0.8695 26 1 -0.3634 -1.0269 -0.0396 27 1 -0.3634 0.4791 0.9092 28 1 3.2505 1.1526 -0.0555 29 1 3.0631 3.5936 -0.1658 30 1 0.7738 4.8819 0.9505 31 1 0.7160 4.9534 -0.8270 32 1 1.5577 7.8097 -0.9010 33 1 0.6051 7.2285 0.5040 34 1 3.3148 8.6741 0.5049 35 1 1.8765 8.9974 1.5303 36 1 3.8960 7.5013 2.5299 37 1 2.2043 6.9958 2.8206 38 1 6.7316 4.4226 3.3008 39 1 3.2983 -1.2486 -0.3289 40 1 0.4173 -2.4628 -0.5763 41 1 2.0003 -3.3504 -0.9051 42 1 2.7340 -2.9278 1.4866 43 1 1.1515 -2.0399 1.8159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714611067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:02 Heat of formation + Delta-G solvation = 12.852217 kcal Electronic energy + Delta-G solvation = -22022.689366 eV Core-core repulsion = 18876.035522 eV Total energy + Delta-G solvation = -3146.653844 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.90883 -39.60043 -38.70616 -35.52198 -34.63168 -34.05965 -31.77664 -31.09260 -28.69503 -26.67865 -25.81501 -24.32568 -23.22750 -22.40149 -21.45336 -21.00827 -19.62748 -18.74737 -17.93087 -17.73003 -17.12952 -16.42274 -16.23457 -15.96083 -15.45570 -15.26733 -14.87513 -14.39885 -14.35728 -14.08827 -13.91548 -13.63054 -13.57098 -13.04412 -12.95775 -12.92724 -12.60013 -12.46654 -12.26908 -12.13022 -11.98114 -11.85681 -11.72992 -11.52538 -11.37270 -11.35065 -10.66799 -10.53363 -10.07924 -9.62202 -8.74569 -8.15573 -5.57103 0.38644 1.30659 1.39887 1.51309 2.30640 2.42806 2.51139 3.03343 3.06924 3.35416 3.61770 3.88261 3.91435 3.94778 4.00386 4.10014 4.13803 4.18454 4.28402 4.36623 4.48871 4.65841 4.68109 4.74221 4.80838 4.83499 4.87319 4.98771 4.99685 4.99850 5.10518 5.13421 5.14456 5.26466 5.31073 5.47781 5.53813 5.56971 5.67854 5.90323 6.22176 6.71686 6.83416 7.36452 7.56097 8.22359 9.01988 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.004714 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.747720 B = 5938.203643 C = 7104.342977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.003 3.997 3 C -0.245 4.245 4 C 0.535 3.465 5 O -0.586 6.586 6 N -0.709 5.709 7 C 0.123 3.877 8 C 0.139 3.861 9 H 0.050 0.950 10 C -0.110 4.110 11 C -0.125 4.125 12 C 0.103 3.897 13 N -0.619 5.619 14 C -0.238 4.238 15 H 0.074 0.926 16 C -0.025 4.025 17 N -0.951 5.951 18 Si 0.950 3.050 19 H -0.287 1.287 20 H -0.314 1.314 21 H -0.254 1.254 22 C -0.153 4.153 23 C -0.155 4.155 24 C -0.164 4.164 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.127 0.873 29 H 0.408 0.592 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.023 0.977 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 -4.726 -8.665 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.001 3.999 3 C -0.266 4.266 4 C 0.326 3.674 5 O -0.471 6.471 6 N -0.360 5.360 7 C -0.003 4.003 8 C 0.033 3.967 9 H 0.068 0.932 10 C -0.148 4.148 11 C -0.163 4.163 12 C -0.021 4.021 13 N -0.345 5.345 14 C -0.367 4.367 15 H 0.091 0.909 16 C -0.221 4.221 17 N -0.596 5.596 18 Si 0.781 3.219 19 H -0.215 1.215 20 H -0.244 1.244 21 H -0.178 1.178 22 C -0.171 4.171 23 C -0.191 4.191 24 C -0.201 4.201 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.145 0.855 29 H 0.246 0.754 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.041 0.959 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.564 -4.782 -8.466 13.638 hybrid contribution 1.494 0.778 0.656 1.808 sum -8.070 -4.003 -7.810 11.923 Atomic orbital electron populations 1.20966 0.90714 1.02075 1.02800 1.21994 0.96270 0.92953 0.88671 1.22357 1.00477 0.91736 1.11980 1.18867 0.86948 0.85305 0.76262 1.90669 1.15442 1.88419 1.52530 1.46194 1.12233 1.05670 1.71880 1.21840 0.94829 0.83414 1.00202 1.21504 0.91428 0.93986 0.89787 0.93204 1.22521 0.98405 0.92673 1.01231 1.22751 0.99768 0.96904 0.96888 1.22082 0.97105 0.88085 0.94849 1.44853 1.49065 1.20501 1.20065 1.18773 0.95865 0.87493 1.34606 0.90888 1.26036 0.96787 1.00244 0.99076 1.69923 1.17954 1.34262 1.37463 0.85738 0.75252 0.82214 0.78680 1.21541 1.24371 1.17798 1.21321 1.00055 0.87897 1.07858 1.23224 1.01232 0.96866 0.97777 1.23081 1.04162 1.00571 0.92310 0.91420 0.90060 0.91810 0.85509 0.75401 0.94107 0.90950 0.88003 0.89972 0.91535 0.88244 0.95945 0.95523 0.93032 0.86346 0.87402 0.86337 0.86853 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.06 8.09 71.23 0.58 -2.48 16 2 C 0.00 0.09 5.83 -17.62 -0.10 -0.01 16 3 C -0.24 -8.42 9.67 23.43 0.23 -8.19 16 4 C 0.54 21.24 7.71 86.57 0.67 21.91 16 5 O -0.59 -25.11 13.13 -4.07 -0.05 -25.17 16 6 N -0.71 -27.88 4.33 -466.72 -2.02 -29.91 16 7 C 0.12 4.49 5.16 86.38 0.45 4.93 16 8 C 0.14 4.99 3.31 45.34 0.15 5.14 16 9 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 10 C -0.11 -2.98 6.48 31.78 0.21 -2.77 16 11 C -0.13 -3.72 7.09 31.99 0.23 -3.49 16 12 C 0.10 4.21 6.22 86.86 0.54 4.75 16 13 N -0.62 -28.01 2.68 -668.26 -1.79 -29.80 16 14 C -0.24 -12.86 9.51 84.04 0.80 -12.06 16 15 H 0.07 4.15 5.50 -2.91 -0.02 4.14 16 16 C -0.03 -1.45 5.46 84.86 0.46 -0.98 16 17 N -0.95 -58.41 13.97 21.65 0.30 -58.11 16 18 Si 0.95 46.27 24.80 68.60 1.70 47.97 16 19 H -0.29 -13.79 6.79 99.48 0.68 -13.12 16 20 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 21 H -0.25 -11.52 7.05 99.48 0.70 -10.82 16 22 C -0.15 -3.46 6.00 -11.54 -0.07 -3.53 16 23 C -0.15 -2.51 9.82 30.62 0.30 -2.21 16 24 C -0.16 -3.12 10.13 30.62 0.31 -2.81 16 25 H 0.07 2.03 7.45 -2.39 -0.02 2.01 16 26 H 0.08 1.70 5.60 -2.39 -0.01 1.69 16 27 H 0.06 2.09 7.02 -2.38 -0.02 2.08 16 28 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 29 H 0.41 16.59 6.28 -92.71 -0.58 16.01 16 30 H 0.04 1.67 8.11 -2.39 -0.02 1.65 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 2.05 7.85 -2.39 -0.02 2.03 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.02 1.01 3.10 -2.39 -0.01 1.00 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16 40 H 0.11 1.62 6.13 -2.39 -0.01 1.61 16 41 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -68.69 335.15 3.27 -65.42 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.39 Total: 31.39 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 4.74 Total: -1.80 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -3.51 Total: -117.81 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.05 Total: -25.17 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.70 Total: 47.97 kcal Total: -68.69 3.27 -65.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714611067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.275 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds