Wall clock time and date at job start Tue Mar 31 2020 00:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32865 * 1 3 3 C 1.47122 * 120.00116 * 2 1 4 4 C 1.50701 * 119.99501 * 4.77663 * 3 2 1 5 5 C 1.32869 * 120.00143 * 184.76954 * 3 2 1 6 6 C 1.50705 * 119.99767 * 6.69244 * 5 3 2 7 7 C 1.50703 * 109.47004 * 123.98768 * 6 5 3 8 8 O 1.21283 * 119.99960 * 0.27139 * 7 6 5 9 9 N 1.34770 * 120.00015 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00017 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47156 * 173.57575 * 10 9 7 12 12 H 1.09002 * 109.87614 * 57.62439 * 11 10 9 13 13 C 1.54326 * 109.88502 * 178.64395 * 11 10 9 14 14 C 1.55396 * 102.82756 * 141.51892 * 13 11 10 15 15 C 1.54907 * 101.67041 * 324.66162 * 14 13 11 16 16 N 1.47028 * 109.88436 * 296.61294 * 11 10 9 17 17 C 1.36934 * 125.64933 * 61.60238 * 16 11 10 18 18 H 1.08000 * 120.00138 * 324.34715 * 17 16 11 19 19 C 1.38813 * 119.99812 * 144.35349 * 17 16 11 20 20 N 1.31625 * 119.99704 * 164.60974 * 19 17 16 21 21 Si 1.86797 * 120.00019 * 344.60673 * 19 17 16 22 22 H 1.48507 * 109.46993 * 92.97635 * 21 19 17 23 23 H 1.48507 * 109.47062 * 212.97308 * 21 19 17 24 24 H 1.48500 * 109.47309 * 332.97592 * 21 19 17 25 25 H 1.08001 * 120.00290 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00006 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.99971 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46800 * 269.99133 * 4 3 2 29 29 H 1.08995 * 109.47170 * 29.99886 * 4 3 2 30 30 H 1.09004 * 109.46466 * 149.99783 * 4 3 2 31 31 H 1.08000 * 120.00273 * 186.68488 * 5 3 2 32 32 H 1.08992 * 109.47340 * 3.98821 * 6 5 3 33 33 H 1.09003 * 109.47019 * 243.98432 * 6 5 3 34 34 H 0.96999 * 120.00199 * 0.02562 * 9 7 6 35 35 H 1.08996 * 109.47655 * 293.57900 * 10 9 7 36 36 H 1.09006 * 109.46745 * 53.58199 * 10 9 7 37 37 H 1.09002 * 110.71589 * 259.97689 * 13 11 10 38 38 H 1.08998 * 110.71933 * 23.24391 * 13 11 10 39 39 H 1.09008 * 111.03352 * 206.52421 * 14 13 11 40 40 H 1.08994 * 110.89464 * 82.73533 * 14 13 11 41 41 H 1.09004 * 110.36507 * 278.09235 * 15 14 13 42 42 H 1.08993 * 110.46332 * 155.81643 * 15 14 13 43 43 H 0.97005 * 119.99669 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3146 2.5769 0.1087 5 6 3.3895 1.2761 -0.0957 6 6 4.1282 -0.0116 -0.3554 7 6 4.9803 0.1382 -1.5893 8 8 4.9909 1.1889 -2.1950 9 7 5.7351 -0.8934 -2.0163 10 6 6.5631 -0.7480 -3.2161 11 6 7.4334 -1.9944 -3.3893 12 1 6.8026 -2.8812 -3.4511 13 6 8.2852 -1.8660 -4.6698 14 6 9.6434 -2.4900 -4.2447 15 6 9.7424 -2.0460 -2.7639 16 7 8.3606 -2.1185 -2.2551 17 6 8.0004 -2.2747 -0.9432 18 1 7.1204 -1.7780 -0.5620 19 6 8.7665 -3.0713 -0.1033 20 7 8.6136 -2.9893 1.2015 21 14 10.0142 -4.2596 -0.8247 22 1 11.3424 -3.5994 -0.8968 23 1 10.1066 -5.4646 0.0384 24 1 9.5855 -4.6596 -2.1890 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8687 -0.9353 -0.0004 28 1 1.0599 2.9338 -0.8892 29 1 0.4016 2.4238 0.6839 30 1 1.9404 3.3153 0.6099 31 1 3.9374 2.2005 0.0126 32 1 3.4106 -0.8182 -0.5052 33 1 4.7637 -0.2446 0.4990 34 1 5.7297 -1.7325 -1.5296 35 1 5.9208 -0.6292 -4.0886 36 1 7.2016 0.1294 -3.1127 37 1 7.8382 -2.4301 -5.4884 38 1 8.4116 -0.8191 -4.9455 39 1 10.4641 -2.0779 -4.8319 40 1 9.6143 -3.5765 -4.3257 41 1 10.1177 -1.0247 -2.6984 42 1 10.3883 -2.7233 -2.2054 43 1 9.1487 -3.5462 1.7884 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714614243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:37 Heat of formation + Delta-G solvation = 2.358366 kcal Electronic energy + Delta-G solvation = -21823.527091 eV Core-core repulsion = 18676.418199 eV Total energy + Delta-G solvation = -3147.108892 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83663 -39.46589 -37.79726 -35.45984 -34.62173 -32.98646 -31.76753 -31.31045 -30.35260 -27.05399 -26.23307 -24.98900 -22.79058 -22.36665 -21.46093 -20.92583 -19.09965 -18.44105 -17.94679 -17.66544 -16.94551 -16.82407 -16.29445 -15.79820 -15.51485 -15.09336 -14.85745 -14.65698 -14.21508 -14.17463 -13.92298 -13.60578 -13.44171 -13.24096 -13.03869 -12.95890 -12.95406 -12.59315 -12.42947 -12.25689 -12.03318 -11.73504 -11.52758 -11.51186 -11.35033 -11.32422 -10.82259 -10.67294 -9.89488 -9.12246 -8.74973 -8.14854 -5.56561 0.44754 1.31565 1.40968 1.51860 1.70844 2.07985 2.42920 2.56004 3.08406 3.35168 3.75488 3.90081 3.94063 4.00107 4.02135 4.12845 4.21653 4.33219 4.40540 4.49691 4.60012 4.67626 4.68817 4.73845 4.79888 4.81781 4.87946 4.94111 4.98153 5.00066 5.13767 5.15008 5.31144 5.47872 5.50169 5.58160 5.61378 5.82823 5.90266 6.04767 6.21856 6.66439 6.83200 7.32572 7.56598 8.22893 9.02386 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020716 B = 0.004326 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.301093 B = 6470.955304 C = 7300.738963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.152 4.152 3 C -0.107 4.107 4 C -0.114 4.114 5 C -0.139 4.139 6 C -0.112 4.112 7 C 0.510 3.490 8 O -0.592 6.592 9 N -0.711 5.711 10 C 0.120 3.880 11 C 0.140 3.860 12 H 0.052 0.948 13 C -0.111 4.111 14 C -0.125 4.125 15 C 0.103 3.897 16 N -0.619 5.619 17 C -0.239 4.239 18 H 0.078 0.922 19 C -0.024 4.024 20 N -0.951 5.951 21 Si 0.949 3.051 22 H -0.290 1.290 23 H -0.316 1.316 24 H -0.253 1.253 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.411 0.589 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.027 0.973 42 H 0.022 0.978 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.081 3.132 -8.037 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C -0.107 4.107 4 C -0.170 4.170 5 C -0.158 4.158 6 C -0.151 4.151 7 C 0.298 3.702 8 O -0.474 6.474 9 N -0.363 5.363 10 C -0.005 4.005 11 C 0.034 3.966 12 H 0.070 0.930 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.021 4.021 16 N -0.345 5.345 17 C -0.368 4.368 18 H 0.096 0.904 19 C -0.220 4.220 20 N -0.596 5.596 21 Si 0.781 3.219 22 H -0.218 1.218 23 H -0.245 1.245 24 H -0.177 1.177 25 H 0.130 0.870 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.250 0.750 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.040 0.960 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.047 3.777 -8.254 14.298 hybrid contribution 1.191 -0.903 0.726 1.662 sum -9.856 2.873 -7.528 12.731 Atomic orbital electron populations 1.24662 0.95042 1.03299 0.97266 1.22087 0.96201 0.96076 1.02585 1.20852 0.93443 0.95766 1.00671 1.20827 1.00429 0.93220 1.02569 1.22716 0.94692 0.97189 1.01162 1.20790 0.99282 0.99335 0.95723 1.20984 0.79927 0.83119 0.86183 1.90598 1.68007 1.29015 1.59752 1.46321 1.43961 1.16439 1.29612 1.21860 0.92767 0.99113 0.86776 1.21494 0.91972 0.94658 0.88472 0.92986 1.22568 0.94512 1.02224 0.95596 1.22785 0.98692 1.00733 0.94110 1.22081 0.87558 0.97587 0.94898 1.44865 1.01173 1.85923 1.02574 1.18801 1.12228 1.22035 0.83703 0.90448 1.26001 1.01334 0.99348 0.95346 1.69904 1.44122 1.42300 1.03247 0.85756 0.79048 0.78650 0.78464 1.21809 1.24507 1.17718 0.87026 0.86516 0.86388 0.91011 0.90074 0.91537 0.87741 0.86328 0.88107 0.75041 0.91035 0.94155 0.87975 0.90065 0.88347 0.91519 0.95544 0.96001 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 14.07 66.64 0.94 -1.90 16 2 C -0.15 -3.34 9.22 23.43 0.22 -3.13 16 3 C -0.11 -2.68 5.98 -18.71 -0.11 -2.79 16 4 C -0.11 -2.25 9.40 71.24 0.67 -1.58 16 5 C -0.14 -4.14 8.43 24.51 0.21 -3.94 16 6 C -0.11 -3.48 5.95 29.10 0.17 -3.31 16 7 C 0.51 19.27 7.82 87.66 0.69 19.95 16 8 O -0.59 -25.85 16.01 -3.04 -0.05 -25.90 16 9 N -0.71 -26.43 4.35 -463.06 -2.02 -28.45 16 10 C 0.12 4.27 5.17 86.38 0.45 4.72 16 11 C 0.14 4.87 3.31 45.34 0.15 5.02 16 12 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 13 C -0.11 -2.92 6.50 31.87 0.21 -2.72 16 14 C -0.13 -3.66 7.09 32.07 0.23 -3.43 16 15 C 0.10 4.13 6.17 86.85 0.54 4.67 16 16 N -0.62 -27.28 2.69 -668.25 -1.80 -29.08 16 17 C -0.24 -12.48 9.52 84.03 0.80 -11.68 16 18 H 0.08 4.19 5.46 -2.91 -0.02 4.18 16 19 C -0.02 -1.35 5.47 84.86 0.46 -0.88 16 20 N -0.95 -57.16 13.97 21.65 0.30 -56.86 16 21 Si 0.95 45.56 24.74 68.60 1.70 47.26 16 22 H -0.29 -13.81 6.83 99.48 0.68 -13.13 16 23 H -0.32 -15.54 7.11 99.48 0.71 -14.83 16 24 H -0.25 -11.27 6.97 99.48 0.69 -10.58 16 25 H 0.11 1.62 6.29 -2.91 -0.02 1.61 16 26 H 0.12 1.59 8.06 -2.91 -0.02 1.57 16 27 H 0.12 2.54 5.96 -2.91 -0.02 2.52 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.27 6.64 -2.39 -0.02 1.25 16 30 H 0.07 1.28 8.06 -2.38 -0.02 1.26 16 31 H 0.10 3.31 8.04 -2.91 -0.02 3.28 16 32 H 0.12 3.11 5.36 -2.39 -0.01 3.10 16 33 H 0.10 3.23 8.14 -2.39 -0.02 3.22 16 34 H 0.41 15.50 6.23 -92.71 -0.58 14.93 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.04 1.62 8.11 -2.38 -0.02 1.60 16 37 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 1.99 7.85 -2.39 -0.02 1.97 16 39 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.02 0.97 3.01 -2.39 -0.01 0.96 16 43 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -68.25 339.27 4.13 -64.12 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.38 Total: 29.91 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 5.61 Total: -1.01 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -3.51 Total: -114.38 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.90 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.70 Total: 47.26 kcal Total: -68.25 4.13 -64.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714614243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.482 kcal (2) G-P(sol) polarization free energy of solvation -68.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds