Wall clock time and date at job start Tue Mar 31 2020 00:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32876 * 1 3 3 C 1.47111 * 119.99840 * 2 1 4 4 C 1.50703 * 120.00582 * 4.90625 * 3 2 1 5 5 C 1.32870 * 119.99695 * 184.91211 * 3 2 1 6 6 C 1.50701 * 120.00346 * 5.77079 * 5 3 2 7 7 C 1.50694 * 109.47478 * 123.33033 * 6 5 3 8 8 O 1.21281 * 120.00022 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.46505 * 120.00187 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47098 * 184.83531 * 10 9 7 12 12 H 1.09003 * 109.87191 * 52.93914 * 11 10 9 13 13 C 1.54323 * 109.88052 * 291.76672 * 11 10 9 14 14 C 1.55161 * 102.93862 * 218.39055 * 13 11 10 15 15 C 1.54910 * 101.58364 * 35.50388 * 14 13 11 16 16 N 1.47024 * 109.88012 * 173.95653 * 11 10 9 17 17 C 1.36933 * 125.64778 * 298.37610 * 16 11 10 18 18 H 1.08000 * 120.00301 * 350.07076 * 17 16 11 19 19 C 1.38812 * 119.99551 * 170.06465 * 17 16 11 20 20 N 1.31616 * 120.00407 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99724 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47225 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47070 * 120.00346 * 21 19 17 24 24 H 1.48493 * 109.47134 * 240.00168 * 21 19 17 25 25 H 1.08000 * 120.00138 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99621 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99621 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47213 * 270.00618 * 4 3 2 29 29 H 1.09001 * 109.46706 * 30.00331 * 4 3 2 30 30 H 1.08995 * 109.46928 * 150.00198 * 4 3 2 31 31 H 1.08006 * 120.00084 * 185.76776 * 5 3 2 32 32 H 1.09003 * 109.46871 * 3.32628 * 6 5 3 33 33 H 1.09004 * 109.47001 * 243.32989 * 6 5 3 34 34 H 0.97005 * 119.99988 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.46785 * 64.83609 * 10 9 7 36 36 H 1.09000 * 109.47036 * 304.83766 * 10 9 7 37 37 H 1.09001 * 110.71900 * 336.75197 * 13 11 10 38 38 H 1.09000 * 110.72379 * 99.84944 * 13 11 10 39 39 H 1.09003 * 111.00394 * 277.42730 * 14 13 11 40 40 H 1.09006 * 111.00328 * 153.57422 * 14 13 11 41 41 H 1.08999 * 110.36679 * 204.15648 * 15 14 13 42 42 H 1.08996 * 110.37057 * 81.82587 * 15 14 13 43 43 H 0.96998 * 120.00336 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3150 2.5768 0.1116 5 6 3.3893 1.2761 -0.0985 6 6 4.1290 -0.0143 -0.3407 7 6 4.9659 0.1127 -1.5875 8 8 4.9625 1.1492 -2.2171 9 7 5.7182 -0.9256 -2.0028 10 6 6.5314 -0.8024 -3.2152 11 6 7.1871 -2.1488 -3.5285 12 1 6.4290 -2.9313 -3.5620 13 6 8.2424 -2.4816 -2.4528 14 6 9.3837 -3.1350 -3.2761 15 6 9.3234 -2.3204 -4.5924 16 7 7.8874 -2.0755 -4.8192 17 6 7.3028 -1.8214 -6.0311 18 1 6.2265 -1.8132 -6.1203 19 6 8.0936 -1.5743 -7.1448 20 7 9.4052 -1.5847 -7.0362 21 14 7.2960 -1.2269 -8.7980 22 1 5.8187 -1.2718 -8.6541 23 1 7.7061 0.1192 -9.2723 24 1 7.7294 -2.2515 -9.7816 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.0581 2.9348 -0.8854 29 1 0.4031 2.4231 0.6886 30 1 1.9418 3.3146 0.6124 31 1 3.9363 2.2027 -0.0051 32 1 3.4122 -0.8261 -0.4653 33 1 4.7754 -0.2279 0.5106 34 1 5.7212 -1.7546 -1.4990 35 1 7.3040 -0.0495 -3.0594 36 1 5.8967 -0.5043 -4.0497 37 1 8.5922 -1.5735 -1.9618 38 1 7.8401 -3.1830 -1.7218 39 1 9.1786 -4.1897 -3.4596 40 1 10.3460 -3.0061 -2.7807 41 1 9.7443 -2.8978 -5.4155 42 1 9.8560 -1.3762 -4.4789 43 1 9.9578 -1.4124 -7.8146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714614244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:40 Heat of formation + Delta-G solvation = -7.590607 kcal Electronic energy + Delta-G solvation = -21330.802157 eV Core-core repulsion = 18183.261845 eV Total energy + Delta-G solvation = -3147.540311 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84705 -39.32072 -37.79865 -35.72012 -34.41157 -32.97835 -31.51138 -31.03905 -30.02828 -27.00828 -26.45391 -25.02221 -22.74145 -22.06747 -21.43877 -21.10414 -18.90657 -18.48232 -17.91575 -17.39409 -16.88798 -16.66655 -15.97953 -15.95949 -15.65880 -15.23310 -14.66251 -14.53078 -14.18975 -13.97512 -13.64848 -13.51328 -13.41197 -13.23528 -13.05132 -12.90399 -12.85294 -12.71446 -12.41876 -12.00382 -11.86777 -11.68216 -11.50939 -11.44203 -11.39816 -11.33304 -10.91354 -10.71996 -10.06455 -9.12006 -8.89708 -7.87614 -5.25600 0.45090 1.42173 1.44389 1.53649 1.69337 2.04084 2.37255 2.52184 3.29763 3.71007 3.74507 3.90428 3.98201 4.00418 4.03668 4.23714 4.28458 4.42034 4.48089 4.55728 4.60610 4.68415 4.73822 4.79200 4.80467 4.94641 4.97901 5.00964 5.14583 5.15790 5.23583 5.38324 5.47251 5.51119 5.57671 5.59882 5.68093 5.79082 5.83009 6.05532 6.23365 6.65040 7.08358 7.34815 7.75831 8.39725 9.21213 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.003631 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.073865 B = 7710.064239 C = 8587.940820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.147 4.147 3 C -0.111 4.111 4 C -0.118 4.118 5 C -0.142 4.142 6 C -0.104 4.104 7 C 0.505 3.495 8 O -0.596 6.596 9 N -0.709 5.709 10 C 0.128 3.872 11 C 0.148 3.852 12 H 0.051 0.949 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.168 3.832 16 N -0.613 5.613 17 C -0.237 4.237 18 H 0.075 0.925 19 C -0.062 4.062 20 N -0.946 5.946 21 Si 0.971 3.029 22 H -0.269 1.269 23 H -0.295 1.295 24 H -0.286 1.286 25 H 0.117 0.883 26 H 0.105 0.895 27 H 0.131 0.869 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.418 0.582 35 H 0.034 0.966 36 H 0.028 0.972 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.046 0.954 42 H -0.013 1.013 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 -1.558 19.592 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.112 4.112 4 C -0.175 4.175 5 C -0.160 4.160 6 C -0.143 4.143 7 C 0.293 3.707 8 O -0.477 6.477 9 N -0.362 5.362 10 C 0.001 3.999 11 C 0.041 3.959 12 H 0.069 0.931 13 C -0.150 4.150 14 C -0.172 4.172 15 C 0.043 3.957 16 N -0.338 5.338 17 C -0.366 4.366 18 H 0.093 0.907 19 C -0.255 4.255 20 N -0.595 5.595 21 Si 0.800 3.200 22 H -0.194 1.194 23 H -0.222 1.222 24 H -0.213 1.213 25 H 0.135 0.865 26 H 0.123 0.877 27 H 0.148 0.852 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.255 0.745 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.005 0.995 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.862 -0.809 18.920 22.892 hybrid contribution 0.137 0.414 -1.425 1.491 sum -12.724 -0.395 17.495 21.636 Atomic orbital electron populations 1.24669 0.95517 1.03086 0.97828 1.22138 0.95966 0.96277 1.02089 1.20841 0.93810 0.95505 1.00999 1.20840 1.00620 0.93826 1.02176 1.22815 0.94579 0.97920 1.00714 1.20846 0.99468 0.98864 0.95111 1.21425 0.79486 0.82712 0.87045 1.90693 1.66832 1.31019 1.59153 1.45879 1.45687 1.17054 1.27535 1.21656 0.92877 0.99486 0.85869 1.21351 0.94834 0.93156 0.86600 0.93147 1.22617 0.95016 1.01111 0.96247 1.22871 0.99111 0.99281 0.95899 1.21395 0.84231 0.95076 0.95021 1.44798 1.04484 1.82748 1.01726 1.19342 0.91398 1.40060 0.85799 0.90701 1.25612 0.96144 1.02096 1.01679 1.70143 1.03608 1.56524 1.29210 0.85111 0.78005 0.76932 0.79936 1.19404 1.22224 1.21304 0.86509 0.87720 0.85186 0.91854 0.90242 0.91345 0.87789 0.85793 0.84842 0.74512 0.94777 0.95308 0.91486 0.87386 0.91168 0.89869 0.93557 0.99465 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 14.07 66.64 0.94 -1.45 16 2 C -0.15 -2.41 9.24 23.42 0.22 -2.19 16 3 C -0.11 -2.20 5.98 -18.71 -0.11 -2.31 16 4 C -0.12 -2.00 9.40 71.24 0.67 -1.33 16 5 C -0.14 -3.13 8.43 24.51 0.21 -2.92 16 6 C -0.10 -1.95 5.96 29.10 0.17 -1.77 16 7 C 0.51 15.07 7.82 87.66 0.69 15.76 16 8 O -0.60 -24.77 16.03 -3.03 -0.05 -24.82 16 9 N -0.71 -19.66 5.42 -463.06 -2.51 -22.17 16 10 C 0.13 4.98 5.12 86.38 0.44 5.42 16 11 C 0.15 5.63 3.20 45.34 0.15 5.77 16 12 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 13 C -0.11 -3.28 6.15 31.78 0.20 -3.09 16 14 C -0.13 -4.54 7.08 31.99 0.23 -4.31 16 15 C 0.17 8.19 5.51 86.85 0.48 8.67 16 16 N -0.61 -31.05 3.13 -668.25 -2.09 -33.14 16 17 C -0.24 -13.42 9.71 84.03 0.82 -12.61 16 18 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 19 C -0.06 -3.60 5.48 84.86 0.46 -3.13 16 20 N -0.95 -57.53 10.40 21.65 0.23 -57.30 16 21 Si 0.97 47.15 29.55 68.60 2.03 49.17 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H 0.12 1.20 8.06 -2.91 -0.02 1.18 16 26 H 0.10 1.32 6.29 -2.91 -0.02 1.30 16 27 H 0.13 1.71 5.92 -2.91 -0.02 1.69 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.04 6.64 -2.39 -0.02 1.03 16 30 H 0.07 1.09 8.06 -2.39 -0.02 1.07 16 31 H 0.10 2.54 8.04 -2.91 -0.02 2.52 16 32 H 0.12 1.75 5.33 -2.39 -0.01 1.74 16 33 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.42 7.81 8.30 -92.70 -0.77 7.04 16 35 H 0.03 1.49 7.99 -2.39 -0.02 1.48 16 36 H 0.03 1.35 7.81 -2.39 -0.02 1.33 16 37 H 0.07 1.95 7.75 -2.39 -0.02 1.93 16 38 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 41 H 0.05 2.57 6.58 -2.39 -0.02 2.55 16 42 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 43 H 0.25 14.61 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -76.09 348.93 3.37 -72.72 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.22 Total: 15.03 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.55 Total: 0.51 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -4.37 Total: -112.61 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.82 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.17 kcal Total: -76.09 3.37 -72.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714614244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.129 kcal (2) G-P(sol) polarization free energy of solvation -76.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds