Wall clock time and date at job start Tue Mar 31 2020 00:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32865 * 1 3 3 C 1.47112 * 120.00561 * 2 1 4 4 C 1.50706 * 119.99898 * 0.02562 * 3 2 1 5 5 C 1.32873 * 120.00083 * 179.97438 * 3 2 1 6 6 C 1.50706 * 119.99770 * 186.30118 * 5 3 2 7 7 C 1.50696 * 109.47146 * 122.37390 * 6 5 3 8 8 O 1.21291 * 119.99854 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00201 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00316 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47205 * 186.47542 * 10 9 7 12 12 H 1.08996 * 109.99869 * 297.97804 * 11 10 9 13 13 C 1.54335 * 109.98627 * 176.93921 * 11 10 9 14 14 C 1.55163 * 103.01725 * 218.66219 * 13 11 10 15 15 C 1.54908 * 101.58039 * 35.31204 * 14 13 11 16 16 N 1.47023 * 109.88303 * 59.07650 * 11 10 9 17 17 C 1.36943 * 125.64289 * 298.39365 * 16 11 10 18 18 H 1.07998 * 120.00135 * 327.12839 * 17 16 11 19 19 C 1.38809 * 119.99473 * 147.13692 * 17 16 11 20 20 N 1.31627 * 119.99730 * 183.34464 * 19 17 16 21 21 Si 1.86796 * 120.00580 * 3.34769 * 19 17 16 22 22 H 1.48492 * 109.47657 * 185.60813 * 21 19 17 23 23 H 1.48504 * 109.47261 * 65.60745 * 21 19 17 24 24 H 1.48508 * 109.46948 * 305.61186 * 21 19 17 25 25 H 1.08000 * 120.00756 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99512 * 359.97438 * 1 2 3 27 27 H 1.08009 * 119.99546 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46806 * 215.30831 * 4 3 2 29 29 H 1.09004 * 109.46789 * 335.31336 * 4 3 2 30 30 H 1.09002 * 109.46942 * 95.30615 * 4 3 2 31 31 H 1.07999 * 120.00000 * 6.30545 * 5 3 2 32 32 H 1.09006 * 109.47081 * 2.37351 * 6 5 3 33 33 H 1.08997 * 109.47205 * 242.37454 * 6 5 3 34 34 H 0.97002 * 120.00138 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.46629 * 66.47371 * 10 9 7 36 36 H 1.09002 * 109.46876 * 306.47383 * 10 9 7 37 37 H 1.09003 * 110.84526 * 100.20115 * 13 11 10 38 38 H 1.08998 * 110.67238 * 337.04977 * 13 11 10 39 39 H 1.08997 * 111.00224 * 277.23580 * 14 13 11 40 40 H 1.08998 * 111.00100 * 153.38599 * 14 13 11 41 41 H 1.09003 * 110.36547 * 204.14910 * 15 14 13 42 42 H 1.09002 * 110.36718 * 81.82446 * 15 14 13 43 43 H 0.96996 * 119.99777 * 5.06258 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3931 1.2738 0.0005 6 6 4.1466 2.5711 0.1438 7 6 5.0561 2.4940 1.3428 8 8 5.0895 1.4847 2.0147 9 7 5.8331 3.5460 1.6681 10 6 6.7169 3.4712 2.8341 11 6 7.3605 4.8383 3.0748 12 1 7.9713 5.1189 2.2167 13 6 8.2347 4.7933 4.3459 14 6 7.9737 6.1766 4.9986 15 6 6.4813 6.4068 4.6532 16 7 6.3172 5.8498 3.2982 17 6 5.3497 6.2104 2.3987 18 1 5.5634 6.1942 1.3402 19 6 4.0943 6.5970 2.8475 20 7 3.1443 6.8802 1.9816 21 14 3.7532 6.7154 4.6802 22 1 2.3147 7.0130 4.8978 23 1 4.5778 7.8016 5.2681 24 1 4.0960 5.4258 5.3319 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8686 -0.9354 -0.0004 28 1 1.8554 3.3132 -0.5934 29 1 0.3204 2.4271 -0.4283 30 1 1.2120 2.9411 1.0240 31 1 3.9330 0.3441 -0.1018 32 1 3.4390 3.3896 0.2765 33 1 4.7413 2.7468 -0.7526 34 1 5.8067 4.3530 1.1306 35 1 7.4953 2.7299 2.6530 36 1 6.1375 3.1830 3.7112 37 1 9.2879 4.6809 4.0886 38 1 7.9124 3.9883 5.0063 39 1 8.6020 6.9455 4.5489 40 1 8.1230 6.1339 6.0774 41 1 6.2513 7.4723 4.6557 42 1 5.8423 5.8783 5.3606 43 1 3.2978 6.7485 1.0330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714614245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:44 Heat of formation + Delta-G solvation = 12.884760 kcal Electronic energy + Delta-G solvation = -22243.127115 eV Core-core repulsion = 19096.474682 eV Total energy + Delta-G solvation = -3146.652433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.25274 -37.94415 -36.60808 -33.81219 -32.83807 -32.27602 -29.90279 -29.66371 -28.31689 -26.43961 -24.68524 -23.36483 -21.36953 -20.77935 -19.71731 -19.14174 -17.70147 -17.56936 -16.51542 -15.95298 -15.61154 -15.19747 -14.95997 -14.47287 -13.93433 -13.50262 -13.37242 -13.32817 -13.01046 -12.83279 -12.44546 -12.37487 -12.10700 -11.74175 -11.41690 -11.35501 -11.15205 -11.04270 -10.98822 -10.70185 -10.59237 -10.51789 -10.34383 -9.89102 -9.41281 -9.30015 -9.20592 -8.72723 -8.24708 -8.01387 -7.08120 -6.33524 -3.51135 1.50099 3.14624 3.30805 3.36784 3.46443 3.63702 4.00698 4.51445 4.87443 4.94762 5.03680 5.16407 5.28681 5.35237 5.39698 5.44670 5.51018 5.58746 5.67934 5.69869 5.80562 5.86291 5.92754 6.00714 6.08494 6.09903 6.13511 6.25144 6.28250 6.32472 6.38757 6.50450 6.59098 6.62500 6.73945 6.84388 6.88705 7.12015 7.20748 7.76158 8.23034 8.29490 8.87861 8.93195 9.42107 10.19757 11.03821 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.005390 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.456502 B = 5193.161046 C = 6152.155980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.115 4.115 4 C -0.122 4.122 5 C -0.110 4.110 6 C -0.120 4.120 7 C 0.515 3.485 8 O -0.564 6.564 9 N -0.699 5.699 10 C 0.118 3.882 11 C 0.146 3.854 12 H 0.042 0.958 13 C -0.124 4.124 14 C -0.130 4.130 15 C 0.094 3.906 16 N -0.604 5.604 17 C -0.324 4.324 18 H 0.068 0.932 19 C -0.004 4.004 20 N -0.918 5.918 21 Si 1.072 2.928 22 H -0.301 1.301 23 H -0.289 1.289 24 H -0.290 1.290 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.409 0.591 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.031 0.969 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -7.114 -2.221 8.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.179 4.179 5 C -0.129 4.129 6 C -0.160 4.160 7 C 0.301 3.699 8 O -0.444 6.444 9 N -0.351 5.351 10 C -0.009 4.009 11 C 0.038 3.962 12 H 0.060 0.940 13 C -0.162 4.162 14 C -0.168 4.168 15 C -0.031 4.031 16 N -0.331 5.331 17 C -0.452 4.452 18 H 0.085 0.915 19 C -0.207 4.207 20 N -0.557 5.557 21 Si 0.905 3.095 22 H -0.229 1.229 23 H -0.216 1.216 24 H -0.217 1.217 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.129 0.871 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.248 0.752 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.088 -7.315 -0.720 7.641 hybrid contribution 1.170 -0.114 -1.294 1.748 sum 3.258 -7.429 -2.014 8.359 Atomic orbital electron populations 1.24372 0.95744 1.01852 1.01385 1.21851 0.95264 0.96031 0.99482 1.20572 0.93992 0.94341 1.02597 1.20888 0.99736 0.94303 1.02953 1.22755 0.93857 0.97655 0.98590 1.20800 0.99210 0.98486 0.97470 1.20362 0.80336 0.83247 0.85962 1.90622 1.68072 1.31696 1.54024 1.46061 1.41788 1.17188 1.30106 1.21841 0.92409 0.97908 0.88700 1.21301 0.90672 0.88245 0.95950 0.94010 1.22523 0.98865 0.97849 0.97009 1.22705 0.97891 0.96822 0.99402 1.22304 0.93916 0.98280 0.88583 1.44744 1.34690 1.40380 1.13264 1.19781 0.90058 1.46850 0.88516 0.91502 1.26106 0.90712 0.97245 1.06604 1.70949 1.33357 1.48284 1.03092 0.83752 0.74351 0.76256 0.75117 1.22884 1.21648 1.21698 0.88445 0.87966 0.87086 0.91139 0.91841 0.90991 0.86867 0.87420 0.88656 0.75184 0.93402 0.92147 0.91520 0.91398 0.91484 0.91734 0.92072 0.95161 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.30 14.12 28.88 0.41 -1.89 16 2 C -0.11 -1.44 9.83 -37.83 -0.37 -1.81 16 3 C -0.11 -1.73 5.98 -102.87 -0.62 -2.34 16 4 C -0.12 -1.79 8.56 36.01 0.31 -1.48 16 5 C -0.11 -1.73 8.45 -36.16 -0.31 -2.04 16 6 C -0.12 -1.97 5.82 -29.03 -0.17 -2.13 16 7 C 0.51 10.24 7.82 -10.99 -0.09 10.16 16 8 O -0.56 -12.84 16.02 5.55 0.09 -12.75 16 9 N -0.70 -13.81 4.80 -60.29 -0.29 -14.10 16 10 C 0.12 2.27 5.23 -4.04 -0.02 2.25 16 11 C 0.15 2.73 3.38 -66.95 -0.23 2.50 16 12 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.12 -1.91 6.48 -24.89 -0.16 -2.07 16 14 C -0.13 -2.07 7.09 -24.58 -0.17 -2.24 16 15 C 0.09 1.93 4.63 -2.53 -0.01 1.92 16 16 N -0.60 -13.55 2.91 -162.57 -0.47 -14.02 16 17 C -0.32 -8.24 8.39 -15.06 -0.13 -8.37 16 18 H 0.07 1.76 6.99 -52.49 -0.37 1.39 16 19 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 20 N -0.92 -26.47 13.70 55.49 0.76 -25.71 16 21 Si 1.07 26.23 24.68 -169.99 -4.20 22.03 16 22 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 23 H -0.29 -6.54 5.95 56.52 0.34 -6.20 16 24 H -0.29 -7.02 6.40 56.52 0.36 -6.66 16 25 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 26 H 0.10 1.17 6.05 -52.48 -0.32 0.85 16 27 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 28 H 0.07 1.01 6.68 -51.93 -0.35 0.66 16 29 H 0.06 0.80 6.17 -51.93 -0.32 0.48 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.11 1.72 8.05 -52.49 -0.42 1.30 16 32 H 0.11 1.85 5.72 -51.93 -0.30 1.56 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.41 8.12 5.90 -40.82 -0.24 7.88 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.31 8.09 -51.93 -0.42 0.89 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.32 6.23 -51.93 -0.32 1.00 16 42 H 0.03 0.66 5.14 -51.93 -0.27 0.40 16 43 H 0.26 7.35 8.73 -40.82 -0.36 6.99 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -30.52 337.54 -7.46 -37.98 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.79 Total: 9.25 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.65 Total: -7.77 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.00 Total: -53.83 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -4.20 Total: 22.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.52 -7.46 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714614245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.863 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds