Wall clock time and date at job start Tue Mar 31 2020 00:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32865 * 1 3 3 C 1.47112 * 120.00561 * 2 1 4 4 C 1.50706 * 119.99898 * 0.02562 * 3 2 1 5 5 C 1.32873 * 120.00083 * 179.97438 * 3 2 1 6 6 C 1.50706 * 119.99770 * 186.30118 * 5 3 2 7 7 C 1.50696 * 109.47146 * 122.37390 * 6 5 3 8 8 O 1.21291 * 119.99854 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00201 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00316 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47205 * 186.47542 * 10 9 7 12 12 H 1.08996 * 109.99869 * 297.97804 * 11 10 9 13 13 C 1.54335 * 109.98627 * 176.93921 * 11 10 9 14 14 C 1.55163 * 103.01725 * 218.66219 * 13 11 10 15 15 C 1.54908 * 101.58039 * 35.31204 * 14 13 11 16 16 N 1.47023 * 109.88303 * 59.07650 * 11 10 9 17 17 C 1.36943 * 125.64289 * 298.39365 * 16 11 10 18 18 H 1.07998 * 120.00135 * 327.12839 * 17 16 11 19 19 C 1.38809 * 119.99473 * 147.13692 * 17 16 11 20 20 N 1.31627 * 119.99730 * 183.34464 * 19 17 16 21 21 Si 1.86796 * 120.00580 * 3.34769 * 19 17 16 22 22 H 1.48492 * 109.47657 * 185.60813 * 21 19 17 23 23 H 1.48504 * 109.47261 * 65.60745 * 21 19 17 24 24 H 1.48508 * 109.46948 * 305.61186 * 21 19 17 25 25 H 1.08000 * 120.00756 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99512 * 359.97438 * 1 2 3 27 27 H 1.08009 * 119.99546 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46806 * 215.30831 * 4 3 2 29 29 H 1.09004 * 109.46789 * 335.31336 * 4 3 2 30 30 H 1.09002 * 109.46942 * 95.30615 * 4 3 2 31 31 H 1.07999 * 120.00000 * 6.30545 * 5 3 2 32 32 H 1.09006 * 109.47081 * 2.37351 * 6 5 3 33 33 H 1.08997 * 109.47205 * 242.37454 * 6 5 3 34 34 H 0.97002 * 120.00138 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.46629 * 66.47371 * 10 9 7 36 36 H 1.09002 * 109.46876 * 306.47383 * 10 9 7 37 37 H 1.09003 * 110.84526 * 100.20115 * 13 11 10 38 38 H 1.08998 * 110.67238 * 337.04977 * 13 11 10 39 39 H 1.08997 * 111.00224 * 277.23580 * 14 13 11 40 40 H 1.08998 * 111.00100 * 153.38599 * 14 13 11 41 41 H 1.09003 * 110.36547 * 204.14910 * 15 14 13 42 42 H 1.09002 * 110.36718 * 81.82446 * 15 14 13 43 43 H 0.96996 * 119.99777 * 5.06258 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3931 1.2738 0.0005 6 6 4.1466 2.5711 0.1438 7 6 5.0561 2.4940 1.3428 8 8 5.0895 1.4847 2.0147 9 7 5.8331 3.5460 1.6681 10 6 6.7169 3.4712 2.8341 11 6 7.3605 4.8383 3.0748 12 1 7.9713 5.1189 2.2167 13 6 8.2347 4.7933 4.3459 14 6 7.9737 6.1766 4.9986 15 6 6.4813 6.4068 4.6532 16 7 6.3172 5.8498 3.2982 17 6 5.3497 6.2104 2.3987 18 1 5.5634 6.1942 1.3402 19 6 4.0943 6.5970 2.8475 20 7 3.1443 6.8802 1.9816 21 14 3.7532 6.7154 4.6802 22 1 2.3147 7.0130 4.8978 23 1 4.5778 7.8016 5.2681 24 1 4.0960 5.4258 5.3319 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8686 -0.9354 -0.0004 28 1 1.8554 3.3132 -0.5934 29 1 0.3204 2.4271 -0.4283 30 1 1.2120 2.9411 1.0240 31 1 3.9330 0.3441 -0.1018 32 1 3.4390 3.3896 0.2765 33 1 4.7413 2.7468 -0.7526 34 1 5.8067 4.3530 1.1306 35 1 7.4953 2.7299 2.6530 36 1 6.1375 3.1830 3.7112 37 1 9.2879 4.6809 4.0886 38 1 7.9124 3.9883 5.0063 39 1 8.6020 6.9455 4.5489 40 1 8.1230 6.1339 6.0774 41 1 6.2513 7.4723 4.6557 42 1 5.8423 5.8783 5.3606 43 1 3.2978 6.7485 1.0330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714614245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:43 Heat of formation + Delta-G solvation = -6.211065 kcal Electronic energy + Delta-G solvation = -22243.955172 eV Core-core repulsion = 19096.474682 eV Total energy + Delta-G solvation = -3147.480490 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82970 -39.48295 -37.81272 -35.41951 -34.77321 -33.45356 -31.64308 -31.10900 -29.58607 -27.69603 -26.26648 -25.12151 -22.82586 -21.99323 -21.31748 -20.63254 -19.54125 -18.79642 -17.97883 -17.38839 -17.06624 -16.80076 -16.54311 -15.92788 -15.39978 -15.10849 -15.07267 -14.78916 -14.43440 -14.20567 -13.91895 -13.75436 -13.34353 -13.29808 -12.93910 -12.71638 -12.65606 -12.56037 -12.33209 -12.14572 -11.99883 -11.77031 -11.47026 -11.43793 -11.24818 -11.16928 -10.85375 -10.69903 -9.89136 -9.14905 -9.01295 -8.39136 -5.54600 0.40190 1.39217 1.48638 1.66014 1.69397 2.05309 2.50663 2.55415 3.20756 3.35967 3.73113 3.86802 3.89876 3.98122 4.02706 4.15727 4.28979 4.32233 4.38905 4.42295 4.45336 4.51374 4.64980 4.70949 4.76052 4.80947 4.83180 4.94417 5.00910 5.02983 5.08478 5.15050 5.26966 5.44728 5.47253 5.57169 5.62281 5.75765 5.78324 6.01200 6.26379 6.68204 6.89147 7.32332 7.48072 8.24863 8.95658 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.005390 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.456502 B = 5193.161046 C = 6152.155980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.137 4.137 3 C -0.112 4.112 4 C -0.123 4.123 5 C -0.132 4.132 6 C -0.111 4.111 7 C 0.508 3.492 8 O -0.595 6.595 9 N -0.702 5.702 10 C 0.118 3.882 11 C 0.143 3.857 12 H 0.051 0.949 13 C -0.116 4.116 14 C -0.117 4.117 15 C 0.081 3.919 16 N -0.623 5.623 17 C -0.295 4.295 18 H 0.054 0.946 19 C -0.056 4.056 20 N -0.956 5.956 21 Si 1.099 2.901 22 H -0.318 1.318 23 H -0.261 1.261 24 H -0.291 1.291 25 H 0.123 0.877 26 H 0.104 0.896 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.408 0.592 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.021 0.979 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.718 -7.842 -1.693 9.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.112 4.112 4 C -0.179 4.179 5 C -0.150 4.150 6 C -0.150 4.150 7 C 0.296 3.704 8 O -0.478 6.478 9 N -0.354 5.354 10 C -0.007 4.007 11 C 0.036 3.964 12 H 0.068 0.932 13 C -0.154 4.154 14 C -0.155 4.155 15 C -0.043 4.043 16 N -0.350 5.350 17 C -0.424 4.424 18 H 0.072 0.928 19 C -0.252 4.252 20 N -0.599 5.599 21 Si 0.929 3.071 22 H -0.247 1.247 23 H -0.187 1.187 24 H -0.218 1.218 25 H 0.141 0.859 26 H 0.122 0.878 27 H 0.139 0.861 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.246 0.754 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.586 -8.033 -0.178 8.799 hybrid contribution 0.724 0.064 -1.494 1.661 sum 4.309 -7.969 -1.672 9.212 Atomic orbital electron populations 1.24658 0.95222 1.03190 0.98051 1.21949 0.96011 0.95579 1.01953 1.20817 0.94032 0.95250 1.01067 1.20893 1.01040 0.94312 1.01652 1.22738 0.94229 0.97324 1.00742 1.20747 0.98643 0.98655 0.97003 1.20960 0.80273 0.82640 0.86517 1.90592 1.69099 1.32793 1.55267 1.46153 1.41953 1.17058 1.30188 1.21858 0.92411 0.98989 0.87483 1.21504 0.89997 0.86592 0.98303 0.93164 1.22559 1.00108 0.97725 0.94991 1.22674 0.94011 0.97293 1.01494 1.22400 0.97492 0.97166 0.87254 1.44935 1.34661 1.41960 1.13447 1.19707 0.90281 1.43827 0.88617 0.92805 1.26857 0.91342 0.98541 1.08481 1.71000 1.34503 1.51527 1.02828 0.83426 0.73577 0.77011 0.73073 1.24709 1.18658 1.21827 0.85923 0.87790 0.86075 0.91221 0.89719 0.93245 0.86539 0.88586 0.85967 0.75370 0.91252 0.94902 0.87910 0.90900 0.90306 0.88747 0.93394 0.96186 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.70 14.12 66.64 0.94 -2.76 16 2 C -0.14 -3.48 9.83 23.42 0.23 -3.25 16 3 C -0.11 -3.34 5.98 -18.71 -0.11 -3.45 16 4 C -0.12 -3.63 8.56 71.24 0.61 -3.02 16 5 C -0.13 -4.18 8.45 24.51 0.21 -3.97 16 6 C -0.11 -3.69 5.82 29.10 0.17 -3.52 16 7 C 0.51 20.50 7.82 87.66 0.69 21.18 16 8 O -0.60 -27.45 16.02 -3.06 -0.05 -27.49 16 9 N -0.70 -27.83 4.80 -463.05 -2.22 -30.05 16 10 C 0.12 4.46 5.23 86.38 0.45 4.91 16 11 C 0.14 5.03 3.38 45.35 0.15 5.18 16 12 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 13 C -0.12 -3.10 6.48 31.79 0.21 -2.89 16 14 C -0.12 -3.25 7.09 31.99 0.23 -3.02 16 15 C 0.08 3.19 4.63 86.86 0.40 3.59 16 16 N -0.62 -27.30 2.91 -668.25 -1.95 -29.25 16 17 C -0.30 -15.11 8.39 84.03 0.71 -14.41 16 18 H 0.05 2.88 6.99 -2.91 -0.02 2.86 16 19 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 20 N -0.96 -56.91 13.70 21.65 0.30 -56.61 16 21 Si 1.10 53.67 24.68 68.60 1.69 55.36 16 22 H -0.32 -16.27 7.11 99.48 0.71 -15.57 16 23 H -0.26 -11.40 5.95 99.48 0.59 -10.81 16 24 H -0.29 -14.05 6.40 99.48 0.64 -13.41 16 25 H 0.12 1.98 8.06 -2.91 -0.02 1.96 16 26 H 0.10 2.15 6.05 -2.91 -0.02 2.13 16 27 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 28 H 0.07 2.04 6.68 -2.39 -0.02 2.02 16 29 H 0.08 2.08 6.17 -2.39 -0.01 2.06 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.12 3.56 8.05 -2.91 -0.02 3.53 16 32 H 0.10 3.43 5.72 -2.38 -0.01 3.42 16 33 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 34 H 0.41 16.35 5.90 -92.71 -0.55 15.80 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.03 1.41 8.09 -2.39 -0.02 1.39 16 37 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 1.91 7.83 -2.39 -0.02 1.89 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 1.99 6.23 -2.39 -0.01 1.98 16 42 H 0.02 0.85 5.14 -2.39 -0.01 0.84 16 43 H 0.25 14.85 8.73 -92.71 -0.81 14.04 16 Total: -1.00 -67.40 337.54 3.34 -64.06 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.23 Total: 32.03 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 5.34 Total: -8.05 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -3.87 Total: -115.91 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.49 kcal Atomic # 14 Polarization: 53.67 SS G_CDS: 1.69 Total: 55.36 kcal Total: -67.40 3.34 -64.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714614245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.851 kcal (2) G-P(sol) polarization free energy of solvation -67.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds