Wall clock time and date at job start Tue Mar 31 2020 00:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47122 * 119.99895 * 2 1 4 4 C 1.50702 * 120.00160 * 0.02562 * 3 2 1 5 5 C 1.32871 * 119.99394 * 179.72730 * 3 2 1 6 6 C 1.50707 * 119.99448 * 185.53757 * 5 3 2 7 7 C 1.50700 * 109.46809 * 125.29251 * 6 5 3 8 8 O 1.21280 * 120.00201 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99821 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99974 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47202 * 175.34130 * 10 9 7 12 12 H 1.08998 * 109.87181 * 306.58959 * 11 10 9 13 13 C 1.54326 * 109.88053 * 67.59870 * 11 10 9 14 14 C 1.55399 * 102.82660 * 141.51714 * 13 11 10 15 15 C 1.54914 * 101.67123 * 324.66613 * 14 13 11 16 16 N 1.47024 * 109.88281 * 185.56793 * 11 10 9 17 17 C 1.36939 * 125.64489 * 61.60594 * 16 11 10 18 18 H 1.08001 * 120.00026 * 13.67966 * 17 16 11 19 19 C 1.38804 * 119.99591 * 193.67710 * 17 16 11 20 20 N 1.31625 * 120.00400 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00069 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46661 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47198 * 119.99897 * 21 19 17 24 24 H 1.48505 * 109.47015 * 240.00083 * 21 19 17 25 25 H 1.07993 * 120.00272 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.99709 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99709 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47111 * 90.93156 * 4 3 2 29 29 H 1.09003 * 109.46899 * 210.93183 * 4 3 2 30 30 H 1.08996 * 109.46543 * 330.92831 * 4 3 2 31 31 H 1.08000 * 120.00544 * 5.53960 * 5 3 2 32 32 H 1.08998 * 109.47001 * 245.28825 * 6 5 3 33 33 H 1.08997 * 109.47208 * 5.28982 * 6 5 3 34 34 H 0.96998 * 120.00158 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46954 * 295.33725 * 10 9 7 36 36 H 1.08994 * 109.47225 * 55.34045 * 10 9 7 37 37 H 1.08999 * 110.72381 * 259.97379 * 13 11 10 38 38 H 1.09000 * 110.72207 * 23.24800 * 13 11 10 39 39 H 1.08995 * 111.04244 * 206.52860 * 14 13 11 40 40 H 1.09006 * 110.89217 * 82.73027 * 14 13 11 41 41 H 1.08998 * 110.36352 * 278.09012 * 15 14 13 42 42 H 1.08987 * 110.46300 * 155.80552 * 15 14 13 43 43 H 0.96996 * 120.00138 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3108 2.5793 0.0006 5 6 3.3930 1.2740 0.0055 6 6 4.1460 2.5734 0.1314 7 6 5.1033 2.4887 1.2923 8 8 5.1680 1.4731 1.9520 9 7 5.8882 3.5412 1.5967 10 6 6.8191 3.4587 2.7248 11 6 7.6656 4.7320 2.7817 12 1 8.1396 4.9053 1.8156 13 6 6.7764 5.9371 3.1537 14 6 7.6946 6.7660 4.0944 15 6 8.4680 5.6501 4.8404 16 7 8.6921 4.6037 3.8264 17 6 9.6905 3.6668 3.8535 18 1 9.9105 3.0864 2.9697 19 6 10.4198 3.4634 5.0169 20 7 10.1515 4.1705 6.0941 21 14 11.7823 2.1859 5.0537 22 1 11.8830 1.5312 3.7246 23 1 13.0716 2.8466 5.3796 24 1 11.4749 1.1639 6.0864 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8687 -0.9353 -0.0004 28 1 1.1440 2.9020 1.0282 29 1 1.8924 3.3348 -0.5277 30 1 0.3512 2.4448 -0.4984 31 1 3.9334 0.3429 -0.0804 32 1 4.7035 2.7607 -0.7863 33 1 3.4408 3.3871 0.3006 34 1 5.8372 4.3531 1.0684 35 1 6.2570 3.3543 3.6528 36 1 7.4708 2.5946 2.5956 37 1 6.5124 6.5106 2.2652 38 1 5.8813 5.6077 3.6814 39 1 7.1052 7.3642 4.7891 40 1 8.3743 7.3947 3.5191 41 1 7.8696 5.2590 5.6632 42 1 9.4202 6.0291 5.2113 43 1 10.6614 4.0285 6.9069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714614246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:47 Heat of formation + Delta-G solvation = 11.197283 kcal Electronic energy + Delta-G solvation = -21290.765975 eV Core-core repulsion = 18144.040368 eV Total energy + Delta-G solvation = -3146.725607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.55011 -37.72744 -36.91492 -34.20095 -32.63753 -32.44460 -29.84313 -29.20163 -28.32763 -26.68159 -24.81357 -23.72600 -21.37117 -20.36303 -19.94367 -19.40117 -17.99457 -17.23535 -16.56593 -16.11041 -15.83821 -14.94722 -14.80637 -14.34790 -14.10849 -13.85931 -13.68008 -13.34165 -13.14377 -12.83113 -12.42357 -12.10140 -11.89045 -11.80884 -11.77173 -11.53493 -11.32968 -11.00508 -10.93905 -10.81062 -10.65344 -10.21217 -10.09372 -9.92199 -9.85722 -9.73322 -9.55292 -8.68912 -8.56508 -8.33749 -6.85089 -5.77035 -3.13636 1.20680 2.84823 2.92144 3.39263 3.46070 3.47973 3.59334 4.48396 4.52411 4.71579 4.92519 5.07481 5.15967 5.24020 5.28676 5.33501 5.39225 5.45905 5.52147 5.53712 5.62075 5.68233 5.80126 5.82495 6.04521 6.12809 6.21401 6.22528 6.33833 6.45202 6.53208 6.55748 6.62128 6.72193 6.80536 6.81556 7.06134 7.51495 7.59876 7.78995 7.82118 8.25099 8.53075 9.17050 9.77580 10.44316 11.34736 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.003425 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.078814 B = 8172.918457 C = 9043.202898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.117 4.117 4 C -0.122 4.122 5 C -0.110 4.110 6 C -0.120 4.120 7 C 0.509 3.491 8 O -0.540 6.540 9 N -0.725 5.725 10 C 0.108 3.892 11 C 0.152 3.848 12 H 0.037 0.963 13 C -0.127 4.127 14 C -0.148 4.148 15 C 0.171 3.829 16 N -0.589 5.589 17 C -0.232 4.232 18 H 0.076 0.924 19 C -0.002 4.002 20 N -0.916 5.916 21 Si 0.911 3.089 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.289 1.289 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.395 0.605 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.025 0.975 42 H 0.075 0.925 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.864 1.216 -13.135 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.129 4.129 3 C -0.118 4.118 4 C -0.179 4.179 5 C -0.129 4.129 6 C -0.159 4.159 7 C 0.295 3.705 8 O -0.417 6.417 9 N -0.376 5.376 10 C -0.017 4.017 11 C 0.043 3.957 12 H 0.055 0.945 13 C -0.165 4.165 14 C -0.187 4.187 15 C 0.046 3.954 16 N -0.314 5.314 17 C -0.361 4.361 18 H 0.094 0.906 19 C -0.200 4.200 20 N -0.562 5.562 21 Si 0.741 3.259 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.216 1.216 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.228 0.772 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.093 0.907 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.611 0.409 -12.457 19.976 hybrid contribution 0.691 -0.451 -0.067 0.828 sum -14.919 -0.041 -12.524 19.479 Atomic orbital electron populations 1.24363 0.95685 1.01898 1.01141 1.21870 0.95294 0.96137 0.99573 1.20527 0.93896 0.94330 1.03004 1.20888 1.00087 0.94572 1.02309 1.22822 0.93857 0.97950 0.98249 1.20850 0.98484 0.98304 0.98298 1.20456 0.81125 0.83550 0.85411 1.90717 1.68155 1.30424 1.52411 1.46161 1.40931 1.16475 1.34078 1.22230 0.90771 1.01401 0.87273 1.21128 0.89190 0.91409 0.93934 0.94508 1.22662 0.98039 0.96757 0.99039 1.23047 0.98396 0.98632 0.98620 1.21478 0.98461 0.85617 0.89815 1.44506 1.28660 1.34640 1.23566 1.19035 1.07992 1.12856 0.96170 0.90580 1.24904 1.00364 0.99364 0.95319 1.69946 1.42455 1.42116 1.01719 0.86065 0.81266 0.81004 0.77566 1.20364 1.21703 1.21589 0.88278 0.88145 0.86838 0.91403 0.91319 0.91603 0.86384 0.88034 0.88113 0.77186 0.92158 0.91156 0.92354 0.91843 0.92343 0.92312 0.95719 0.90721 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 14.11 28.88 0.41 -1.23 16 2 C -0.11 -1.11 9.83 -37.83 -0.37 -1.48 16 3 C -0.12 -1.23 5.98 -102.87 -0.62 -1.85 16 4 C -0.12 -1.01 8.60 36.01 0.31 -0.70 16 5 C -0.11 -1.28 8.45 -36.16 -0.31 -1.58 16 6 C -0.12 -1.25 5.78 -29.03 -0.17 -1.42 16 7 C 0.51 7.81 7.82 -10.98 -0.09 7.72 16 8 O -0.54 -10.95 16.03 5.56 0.09 -10.86 16 9 N -0.73 -10.64 5.41 -60.29 -0.33 -10.97 16 10 C 0.11 2.10 5.11 -4.04 -0.02 2.08 16 11 C 0.15 2.97 3.20 -66.95 -0.21 2.76 16 12 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 13 C -0.13 -2.07 6.14 -24.76 -0.15 -2.22 16 14 C -0.15 -2.68 7.09 -24.45 -0.17 -2.86 16 15 C 0.17 4.07 5.43 -2.53 -0.01 4.05 16 16 N -0.59 -14.63 3.13 -162.57 -0.51 -15.13 16 17 C -0.23 -6.39 9.70 -15.06 -0.15 -6.53 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C 0.00 -0.07 5.47 -17.43 -0.10 -0.16 16 20 N -0.92 -26.74 10.53 55.49 0.58 -26.16 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H 0.10 0.70 8.06 -52.49 -0.42 0.27 16 26 H 0.10 0.75 6.14 -52.49 -0.32 0.43 16 27 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 30 H 0.07 0.47 6.39 -51.93 -0.33 0.13 16 31 H 0.12 1.46 8.05 -52.49 -0.42 1.04 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.85 5.67 -51.93 -0.29 0.55 16 34 H 0.40 4.41 8.28 -40.82 -0.34 4.07 16 35 H 0.06 1.29 8.01 -51.93 -0.42 0.88 16 36 H 0.07 1.58 7.83 -51.93 -0.41 1.18 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.02 7.76 -51.93 -0.40 0.62 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.07 1.98 6.85 -51.94 -0.36 1.62 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -32.57 349.31 -8.54 -41.11 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.97 Total: 2.94 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.65 Total: -3.42 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.25 Total: -52.26 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.57 -8.54 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714614246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.304 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds