Wall clock time and date at job start Tue Mar 31 2020 00:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47122 * 119.99895 * 2 1 4 4 C 1.50702 * 120.00160 * 0.02562 * 3 2 1 5 5 C 1.32871 * 119.99394 * 179.72730 * 3 2 1 6 6 C 1.50707 * 119.99448 * 185.53757 * 5 3 2 7 7 C 1.50700 * 109.46809 * 125.29251 * 6 5 3 8 8 O 1.21280 * 120.00201 * 0.02562 * 7 6 5 9 9 N 1.34783 * 119.99821 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99974 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47202 * 175.34130 * 10 9 7 12 12 H 1.08998 * 109.87181 * 306.58959 * 11 10 9 13 13 C 1.54326 * 109.88053 * 67.59870 * 11 10 9 14 14 C 1.55399 * 102.82660 * 141.51714 * 13 11 10 15 15 C 1.54914 * 101.67123 * 324.66613 * 14 13 11 16 16 N 1.47024 * 109.88281 * 185.56793 * 11 10 9 17 17 C 1.36939 * 125.64489 * 61.60594 * 16 11 10 18 18 H 1.08001 * 120.00026 * 13.67966 * 17 16 11 19 19 C 1.38804 * 119.99591 * 193.67710 * 17 16 11 20 20 N 1.31625 * 120.00400 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00069 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46661 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47198 * 119.99897 * 21 19 17 24 24 H 1.48505 * 109.47015 * 240.00083 * 21 19 17 25 25 H 1.07993 * 120.00272 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.99709 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99709 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47111 * 90.93156 * 4 3 2 29 29 H 1.09003 * 109.46899 * 210.93183 * 4 3 2 30 30 H 1.08996 * 109.46543 * 330.92831 * 4 3 2 31 31 H 1.08000 * 120.00544 * 5.53960 * 5 3 2 32 32 H 1.08998 * 109.47001 * 245.28825 * 6 5 3 33 33 H 1.08997 * 109.47208 * 5.28982 * 6 5 3 34 34 H 0.96998 * 120.00158 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46954 * 295.33725 * 10 9 7 36 36 H 1.08994 * 109.47225 * 55.34045 * 10 9 7 37 37 H 1.08999 * 110.72381 * 259.97379 * 13 11 10 38 38 H 1.09000 * 110.72207 * 23.24800 * 13 11 10 39 39 H 1.08995 * 111.04244 * 206.52860 * 14 13 11 40 40 H 1.09006 * 110.89217 * 82.73027 * 14 13 11 41 41 H 1.08998 * 110.36352 * 278.09012 * 15 14 13 42 42 H 1.08987 * 110.46300 * 155.80552 * 15 14 13 43 43 H 0.96996 * 120.00138 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3108 2.5793 0.0006 5 6 3.3930 1.2740 0.0055 6 6 4.1460 2.5734 0.1314 7 6 5.1033 2.4887 1.2923 8 8 5.1680 1.4731 1.9520 9 7 5.8882 3.5412 1.5967 10 6 6.8191 3.4587 2.7248 11 6 7.6656 4.7320 2.7817 12 1 8.1396 4.9053 1.8156 13 6 6.7764 5.9371 3.1537 14 6 7.6946 6.7660 4.0944 15 6 8.4680 5.6501 4.8404 16 7 8.6921 4.6037 3.8264 17 6 9.6905 3.6668 3.8535 18 1 9.9105 3.0864 2.9697 19 6 10.4198 3.4634 5.0169 20 7 10.1515 4.1705 6.0941 21 14 11.7823 2.1859 5.0537 22 1 11.8830 1.5312 3.7246 23 1 13.0716 2.8466 5.3796 24 1 11.4749 1.1639 6.0864 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8687 -0.9353 -0.0004 28 1 1.1440 2.9020 1.0282 29 1 1.8924 3.3348 -0.5277 30 1 0.3512 2.4448 -0.4984 31 1 3.9334 0.3429 -0.0804 32 1 4.7035 2.7607 -0.7863 33 1 3.4408 3.3871 0.3006 34 1 5.8372 4.3531 1.0684 35 1 6.2570 3.3543 3.6528 36 1 7.4708 2.5946 2.5956 37 1 6.5124 6.5106 2.2652 38 1 5.8813 5.6077 3.6814 39 1 7.1052 7.3642 4.7891 40 1 8.3743 7.3947 3.5191 41 1 7.8696 5.2590 5.6632 42 1 9.4202 6.0291 5.2113 43 1 10.6614 4.0285 6.9069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714614246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:46 Heat of formation + Delta-G solvation = -9.831710 kcal Electronic energy + Delta-G solvation = -21291.677861 eV Core-core repulsion = 18144.040368 eV Total energy + Delta-G solvation = -3147.637493 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84235 -39.30474 -37.77827 -35.71482 -34.40842 -33.43114 -31.46349 -30.67016 -29.38334 -27.56311 -26.64703 -25.33397 -22.39748 -21.96322 -21.28339 -20.86383 -18.86368 -18.76751 -17.99932 -17.33213 -17.05818 -16.66495 -16.08124 -15.87218 -15.58456 -15.01647 -14.86286 -14.52871 -14.11369 -14.02871 -13.76691 -13.65920 -13.37308 -13.23697 -13.01459 -12.87339 -12.71011 -12.50893 -12.27903 -11.99928 -11.88041 -11.73055 -11.67210 -11.47504 -11.38991 -11.37901 -10.91153 -10.70891 -10.05968 -9.11397 -8.87083 -7.90110 -5.27392 0.43730 1.41732 1.44124 1.53323 1.69813 2.03746 2.37055 2.51755 3.29394 3.71584 3.74887 3.90442 3.98804 4.01001 4.06262 4.27364 4.35415 4.43605 4.46827 4.48757 4.57511 4.61227 4.73807 4.81764 4.91772 4.98420 5.01305 5.02456 5.14852 5.15913 5.23892 5.39547 5.46477 5.48883 5.58919 5.60860 5.66859 5.78133 5.80062 6.05855 6.22279 6.65944 7.07921 7.35770 7.75285 8.40340 9.20593 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.003425 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.078814 B = 8172.918457 C = 9043.202898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.147 4.147 3 C -0.108 4.108 4 C -0.125 4.125 5 C -0.145 4.145 6 C -0.101 4.101 7 C 0.505 3.495 8 O -0.598 6.598 9 N -0.708 5.708 10 C 0.128 3.872 11 C 0.148 3.852 12 H 0.052 0.948 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.171 3.829 16 N -0.613 5.613 17 C -0.237 4.237 18 H 0.075 0.925 19 C -0.061 4.061 20 N -0.946 5.946 21 Si 0.971 3.029 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.295 1.295 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.418 0.582 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.070 0.930 41 H -0.010 1.010 42 H 0.037 0.963 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.097 2.930 -15.692 24.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.109 4.109 4 C -0.181 4.181 5 C -0.163 4.163 6 C -0.140 4.140 7 C 0.293 3.707 8 O -0.478 6.478 9 N -0.361 5.361 10 C 0.001 3.999 11 C 0.040 3.960 12 H 0.069 0.931 13 C -0.150 4.150 14 C -0.172 4.172 15 C 0.047 3.953 16 N -0.337 5.337 17 C -0.367 4.367 18 H 0.093 0.907 19 C -0.255 4.255 20 N -0.594 5.594 21 Si 0.799 3.201 22 H -0.193 1.193 23 H -0.213 1.213 24 H -0.223 1.223 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.255 0.745 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.008 0.992 42 H 0.056 0.944 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.871 2.164 -15.081 23.484 hybrid contribution 1.251 -1.051 0.684 1.771 sum -16.621 1.113 -14.398 22.018 Atomic orbital electron populations 1.24640 0.95071 1.03278 0.97843 1.22004 0.96192 0.96113 1.02201 1.20849 0.93757 0.95601 1.00652 1.20986 1.00811 0.93537 1.02754 1.22773 0.94488 0.97807 1.01245 1.20816 0.97762 0.98642 0.96810 1.21433 0.81025 0.82344 0.85907 1.90699 1.69839 1.32669 1.54622 1.45871 1.39716 1.17641 1.32867 1.21648 0.90581 0.99786 0.87859 1.21358 0.88773 0.92806 0.93018 0.93059 1.22662 0.96732 0.94944 1.00637 1.22910 0.98405 0.96999 0.98842 1.21300 0.96943 0.87314 0.89790 1.44781 1.29664 1.34487 1.24764 1.19318 1.08514 1.12812 0.96029 0.90735 1.25668 1.02995 1.01510 0.95315 1.70146 1.43622 1.43622 1.02008 0.85123 0.78749 0.78607 0.77575 1.19274 1.21332 1.22257 0.86919 0.86735 0.87608 0.91394 0.89417 0.90187 0.88678 0.85035 0.85082 0.74455 0.94984 0.95272 0.87252 0.91534 0.89860 0.91089 0.99243 0.94409 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 14.11 66.64 0.94 -1.55 16 2 C -0.15 -2.81 9.83 23.43 0.23 -2.58 16 3 C -0.11 -2.11 5.98 -18.71 -0.11 -2.22 16 4 C -0.12 -1.63 8.60 71.24 0.61 -1.02 16 5 C -0.14 -3.24 8.45 24.51 0.21 -3.03 16 6 C -0.10 -1.85 5.78 29.10 0.17 -1.68 16 7 C 0.50 15.02 7.82 87.66 0.69 15.70 16 8 O -0.60 -25.00 16.03 -3.03 -0.05 -25.05 16 9 N -0.71 -19.50 5.41 -463.06 -2.51 -22.01 16 10 C 0.13 5.00 5.11 86.38 0.44 5.44 16 11 C 0.15 5.59 3.20 45.34 0.15 5.74 16 12 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 13 C -0.11 -3.24 6.14 31.87 0.20 -3.05 16 14 C -0.13 -4.50 7.09 32.07 0.23 -4.27 16 15 C 0.17 8.35 5.43 86.86 0.47 8.82 16 16 N -0.61 -30.94 3.13 -668.26 -2.09 -33.03 16 17 C -0.24 -13.44 9.70 84.03 0.82 -12.62 16 18 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 19 C -0.06 -3.56 5.47 84.86 0.46 -3.09 16 20 N -0.95 -57.69 10.53 21.65 0.23 -57.47 16 21 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 25 H 0.11 1.31 8.06 -2.91 -0.02 1.28 16 26 H 0.11 1.33 6.14 -2.91 -0.02 1.31 16 27 H 0.11 2.09 8.06 -2.91 -0.02 2.07 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 0.81 6.43 -2.39 -0.02 0.80 16 30 H 0.08 0.82 6.39 -2.39 -0.02 0.81 16 31 H 0.10 2.49 8.05 -2.91 -0.02 2.47 16 32 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.13 1.62 5.67 -2.39 -0.01 1.61 16 34 H 0.42 7.65 8.28 -92.71 -0.77 6.88 16 35 H 0.03 1.42 8.01 -2.38 -0.02 1.40 16 36 H 0.03 1.36 7.83 -2.39 -0.02 1.34 16 37 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.07 1.92 7.76 -2.39 -0.02 1.91 16 39 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.07 2.25 8.14 -2.38 -0.02 2.24 16 41 H -0.01 -0.57 8.08 -2.39 -0.02 -0.59 16 42 H 0.04 2.08 6.85 -2.39 -0.02 2.07 16 43 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -77.09 349.31 3.32 -73.77 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.22 Total: 14.02 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 5.49 Total: 0.58 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -4.37 Total: -112.51 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.05 Total: -25.05 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -77.09 3.32 -73.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714614246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.937 kcal (2) G-P(sol) polarization free energy of solvation -77.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds