Wall clock time and date at job start Tue Mar 31 2020 00:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47118 * 120.00078 * 2 1 4 4 C 1.50705 * 119.99808 * 354.55838 * 3 2 1 5 5 C 1.32868 * 120.00057 * 174.55212 * 3 2 1 6 6 C 1.50695 * 119.99846 * 4.07298 * 5 3 2 7 7 C 1.50706 * 109.47229 * 126.66102 * 6 5 3 8 8 O 1.21281 * 119.99947 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00098 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00083 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99923 * 179.97438 * 9 7 6 12 12 H 1.08998 * 110.64603 * 358.32046 * 11 9 7 13 13 C 1.55152 * 110.72519 * 234.97704 * 11 9 7 14 14 C 1.54907 * 101.58253 * 277.14486 * 13 11 9 15 15 N 1.47423 * 104.83203 * 322.98232 * 14 13 11 16 16 C 1.36932 * 125.64977 * 204.16233 * 15 14 13 17 17 H 1.08001 * 120.00213 * 333.32902 * 16 15 14 18 18 C 1.38817 * 120.00111 * 153.32325 * 16 15 14 19 19 N 1.31609 * 120.00261 * 154.79670 * 18 16 15 20 20 Si 1.86804 * 119.99486 * 334.79648 * 18 16 15 21 21 H 1.48500 * 109.47054 * 87.49440 * 20 18 16 22 22 H 1.48504 * 109.46700 * 207.48876 * 20 18 16 23 23 H 1.48501 * 109.47320 * 327.48785 * 20 18 16 24 24 C 1.47021 * 108.70135 * 24.13598 * 15 14 13 25 25 H 1.07994 * 119.99620 * 180.27272 * 1 2 3 26 26 H 1.07993 * 119.99502 * 0.26915 * 1 2 3 27 27 H 1.08003 * 119.99939 * 179.73392 * 2 1 3 28 28 H 1.09001 * 109.46975 * 89.99902 * 4 3 2 29 29 H 1.08996 * 109.47057 * 209.99357 * 4 3 2 30 30 H 1.08997 * 109.47232 * 329.99827 * 4 3 2 31 31 H 1.07997 * 119.99746 * 184.06800 * 5 3 2 32 32 H 1.08999 * 109.46844 * 246.65846 * 6 5 3 33 33 H 1.08998 * 109.47492 * 6.65981 * 6 5 3 34 34 H 1.09000 * 109.47218 * 89.99676 * 10 9 7 35 35 H 1.08998 * 109.47477 * 209.99672 * 10 9 7 36 36 H 1.09002 * 109.47485 * 329.99820 * 10 9 7 37 37 H 1.09001 * 111.00031 * 35.21610 * 13 11 9 38 38 H 1.08997 * 111.00670 * 159.06468 * 13 11 9 39 39 H 1.09006 * 110.36416 * 204.14740 * 14 13 11 40 40 H 1.08993 * 110.46375 * 81.87674 * 14 13 11 41 41 H 0.97006 * 119.99827 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.88110 * 239.51826 * 24 15 14 43 43 H 1.08995 * 109.88503 * 118.35401 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0644 1.2741 0.0000 4 6 1.3159 2.5763 -0.1238 5 6 3.3885 1.2767 0.1092 6 6 4.1445 -0.0266 0.1407 7 6 5.2207 -0.0087 -0.9141 8 8 5.3598 0.9662 -1.6220 9 7 6.0286 -1.0760 -1.0707 10 6 5.8603 -2.2538 -0.2160 11 6 7.0744 -1.0587 -2.0965 12 1 7.0441 -0.1266 -2.6606 13 6 6.9368 -2.2816 -3.0414 14 6 7.6588 -3.3853 -2.2289 15 7 8.7885 -2.6970 -1.5783 16 6 9.9471 -3.2906 -1.1536 17 1 9.9494 -4.3350 -0.8785 18 6 11.1188 -2.5501 -1.0769 19 7 12.0731 -2.9124 -0.2462 20 14 11.3409 -1.0394 -2.1529 21 1 10.7758 0.1476 -1.4623 22 1 12.7876 -0.8216 -2.4078 23 1 10.6359 -1.2431 -3.4440 24 6 8.4655 -1.2675 -1.4614 25 1 -0.5399 -0.9353 0.0045 26 1 -0.5399 0.9353 -0.0044 27 1 1.8688 -0.9353 0.0043 28 1 1.0511 2.9389 0.8694 29 1 1.9467 3.3118 -0.6228 30 1 0.4087 2.4199 -0.7073 31 1 3.9230 2.2128 0.1754 32 1 4.5999 -0.1588 1.1222 33 1 3.4576 -0.8499 -0.0550 34 1 5.1593 -2.9451 -0.6839 35 1 6.8231 -2.7471 -0.0833 36 1 5.4730 -1.9457 0.7552 37 1 5.8890 -2.5361 -3.2009 38 1 7.4422 -2.1010 -3.9902 39 1 8.0238 -4.1683 -2.8937 40 1 6.9889 -3.8067 -1.4796 41 1 12.8917 -2.3947 -0.1923 42 1 9.2090 -0.6747 -1.9943 43 1 8.4407 -0.9777 -0.4110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715023926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:22 Heat of formation + Delta-G solvation = 38.626542 kcal Electronic energy + Delta-G solvation = -22031.116843 eV Core-core repulsion = 18885.580658 eV Total energy + Delta-G solvation = -3145.536186 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.11516 -37.98446 -36.89002 -34.52750 -32.50297 -31.94783 -30.31726 -29.49620 -28.50586 -26.46750 -25.59452 -24.09377 -22.18045 -21.03934 -20.30604 -18.87239 -17.72245 -17.26185 -16.87038 -16.25014 -15.94348 -15.44769 -15.00287 -14.79178 -13.89940 -13.66566 -13.45397 -13.28460 -13.08194 -12.81209 -12.63944 -12.58516 -12.35437 -12.29361 -12.09626 -11.68944 -11.63223 -11.29044 -11.17023 -10.79782 -10.76363 -10.66157 -10.61756 -10.40562 -10.16490 -9.64245 -9.45067 -8.58424 -8.39772 -8.34590 -7.00878 -6.03000 -3.34616 1.17320 2.74892 2.79733 3.23660 3.34988 3.48027 3.51779 4.47771 4.52531 4.64856 4.68568 4.88017 4.95446 5.13668 5.15161 5.24856 5.30080 5.31824 5.37401 5.41093 5.46549 5.53596 5.54612 5.62127 5.67358 5.84305 5.91976 5.95394 6.04401 6.18995 6.24437 6.25201 6.35977 6.53495 6.54026 6.56243 6.73876 6.76269 6.89770 7.58724 7.75478 8.27288 8.32313 8.80116 9.64168 10.16617 11.13234 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031243 B = 0.003901 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.986408 B = 7176.760511 C = 7468.872724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.122 4.122 3 C -0.117 4.117 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.118 4.118 7 C 0.516 3.484 8 O -0.546 6.546 9 N -0.598 5.598 10 C 0.066 3.934 11 C 0.125 3.875 12 H 0.104 0.896 13 C -0.144 4.144 14 C 0.121 3.879 15 N -0.606 5.606 16 C -0.249 4.249 17 H 0.089 0.911 18 C 0.032 3.968 19 N -0.899 5.899 20 Si 0.876 3.124 21 H -0.284 1.284 22 H -0.301 1.301 23 H -0.275 1.275 24 C 0.115 3.885 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.034 0.966 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.500 4.808 1.080 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.140 4.140 3 C -0.117 4.117 4 C -0.171 4.171 5 C -0.129 4.129 6 C -0.157 4.157 7 C 0.304 3.696 8 O -0.423 6.423 9 N -0.330 5.330 10 C -0.076 4.076 11 C 0.021 3.979 12 H 0.122 0.878 13 C -0.183 4.183 14 C -0.004 4.004 15 N -0.334 5.334 16 C -0.376 4.376 17 H 0.106 0.894 18 C -0.168 4.168 19 N -0.541 5.541 20 Si 0.707 3.293 21 H -0.212 1.212 22 H -0.229 1.229 23 H -0.201 1.201 24 C -0.010 4.010 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.135 0.865 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -21.160 5.280 0.807 21.824 hybrid contribution 0.408 0.757 -0.563 1.028 sum -20.752 6.038 0.244 21.614 Atomic orbital electron populations 1.24387 0.95697 1.01944 1.00456 1.22006 0.95352 0.96419 1.00212 1.20535 0.94017 0.94371 1.02760 1.20764 1.00137 0.94332 1.01834 1.22854 0.93748 0.97901 0.98420 1.20897 0.97005 0.98395 0.99437 1.20521 0.82032 0.82402 0.84660 1.90668 1.71386 1.33257 1.47024 1.47819 1.33076 1.16333 1.35799 1.22108 1.04448 0.87823 0.93258 1.22111 0.86943 0.99986 0.88851 0.87822 1.23117 1.00368 0.96297 0.98525 1.21945 0.90125 0.94349 0.93964 1.44780 1.16659 1.02763 1.69201 1.18548 0.83671 0.97226 1.38139 0.89375 1.25171 0.95521 0.98037 0.98115 1.69874 1.08419 1.41347 1.34510 0.86990 0.75605 0.83671 0.83023 1.21174 1.22899 1.20078 1.21945 0.92315 0.87938 0.98843 0.88207 0.88177 0.86506 0.91656 0.91525 0.91659 0.86187 0.87783 0.88017 0.92798 0.88113 0.91692 0.91293 0.90397 0.93293 0.94720 0.92606 0.94858 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 14.07 28.88 0.41 -1.06 16 2 C -0.12 -1.12 9.31 -37.83 -0.35 -1.47 16 3 C -0.12 -1.20 5.98 -102.87 -0.62 -1.81 16 4 C -0.11 -0.97 9.39 36.01 0.34 -0.64 16 5 C -0.11 -1.27 8.43 -36.16 -0.31 -1.58 16 6 C -0.12 -1.32 4.50 -29.03 -0.13 -1.45 16 7 C 0.52 7.93 7.67 -10.98 -0.08 7.85 16 8 O -0.55 -10.32 15.40 5.56 0.09 -10.24 16 9 N -0.60 -9.29 2.82 -171.84 -0.49 -9.78 16 10 C 0.07 0.86 8.34 59.85 0.50 1.36 16 11 C 0.12 2.26 3.58 -66.10 -0.24 2.02 16 12 H 0.10 1.96 6.99 -51.93 -0.36 1.60 16 13 C -0.14 -2.37 6.53 -24.59 -0.16 -2.53 16 14 C 0.12 2.26 6.35 -2.53 -0.02 2.24 16 15 N -0.61 -14.16 2.65 -170.07 -0.45 -14.61 16 16 C -0.25 -6.88 10.49 -15.06 -0.16 -7.04 16 17 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 18 C 0.03 0.92 5.40 -17.43 -0.09 0.83 16 19 N -0.90 -27.40 13.97 55.49 0.78 -26.63 16 20 Si 0.88 22.74 24.81 -169.99 -4.22 18.53 16 21 H -0.28 -7.28 6.76 56.52 0.38 -6.90 16 22 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 23 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.12 2.53 4.94 -3.06 -0.02 2.52 16 25 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 26 H 0.10 0.70 6.31 -52.49 -0.33 0.37 16 27 H 0.12 0.97 5.80 -52.48 -0.30 0.67 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 30 H 0.06 0.50 6.66 -51.93 -0.35 0.15 16 31 H 0.12 1.45 8.05 -52.49 -0.42 1.02 16 32 H 0.10 1.00 7.40 -51.93 -0.38 0.61 16 33 H 0.10 0.95 5.27 -51.93 -0.27 0.67 16 34 H 0.05 0.59 7.99 -51.93 -0.41 0.17 16 35 H 0.10 1.60 5.19 -51.93 -0.27 1.33 16 36 H 0.06 0.67 6.44 -51.93 -0.33 0.33 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.59 5.54 -51.93 -0.29 0.30 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.03 0.81 3.46 -51.93 -0.18 0.63 16 43 H 0.04 1.02 8.04 -51.93 -0.42 0.60 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -32.55 333.81 -6.62 -39.17 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.44 Total: -0.72 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.92 Total: -0.76 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.16 Total: -51.02 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.22 Total: 18.53 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.55 -6.62 -39.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715023926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.799 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds