Wall clock time and date at job start Tue Mar 31 2020 00:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47118 * 120.00078 * 2 1 4 4 C 1.50705 * 119.99808 * 354.55838 * 3 2 1 5 5 C 1.32868 * 120.00057 * 174.55212 * 3 2 1 6 6 C 1.50695 * 119.99846 * 4.07298 * 5 3 2 7 7 C 1.50706 * 109.47229 * 126.66102 * 6 5 3 8 8 O 1.21281 * 119.99947 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00098 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00083 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99923 * 179.97438 * 9 7 6 12 12 H 1.08998 * 110.64603 * 358.32046 * 11 9 7 13 13 C 1.55152 * 110.72519 * 234.97704 * 11 9 7 14 14 C 1.54907 * 101.58253 * 277.14486 * 13 11 9 15 15 N 1.47423 * 104.83203 * 322.98232 * 14 13 11 16 16 C 1.36932 * 125.64977 * 204.16233 * 15 14 13 17 17 H 1.08001 * 120.00213 * 333.32902 * 16 15 14 18 18 C 1.38817 * 120.00111 * 153.32325 * 16 15 14 19 19 N 1.31609 * 120.00261 * 154.79670 * 18 16 15 20 20 Si 1.86804 * 119.99486 * 334.79648 * 18 16 15 21 21 H 1.48500 * 109.47054 * 87.49440 * 20 18 16 22 22 H 1.48504 * 109.46700 * 207.48876 * 20 18 16 23 23 H 1.48501 * 109.47320 * 327.48785 * 20 18 16 24 24 C 1.47021 * 108.70135 * 24.13598 * 15 14 13 25 25 H 1.07994 * 119.99620 * 180.27272 * 1 2 3 26 26 H 1.07993 * 119.99502 * 0.26915 * 1 2 3 27 27 H 1.08003 * 119.99939 * 179.73392 * 2 1 3 28 28 H 1.09001 * 109.46975 * 89.99902 * 4 3 2 29 29 H 1.08996 * 109.47057 * 209.99357 * 4 3 2 30 30 H 1.08997 * 109.47232 * 329.99827 * 4 3 2 31 31 H 1.07997 * 119.99746 * 184.06800 * 5 3 2 32 32 H 1.08999 * 109.46844 * 246.65846 * 6 5 3 33 33 H 1.08998 * 109.47492 * 6.65981 * 6 5 3 34 34 H 1.09000 * 109.47218 * 89.99676 * 10 9 7 35 35 H 1.08998 * 109.47477 * 209.99672 * 10 9 7 36 36 H 1.09002 * 109.47485 * 329.99820 * 10 9 7 37 37 H 1.09001 * 111.00031 * 35.21610 * 13 11 9 38 38 H 1.08997 * 111.00670 * 159.06468 * 13 11 9 39 39 H 1.09006 * 110.36416 * 204.14740 * 14 13 11 40 40 H 1.08993 * 110.46375 * 81.87674 * 14 13 11 41 41 H 0.97006 * 119.99827 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.88110 * 239.51826 * 24 15 14 43 43 H 1.08995 * 109.88503 * 118.35401 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0644 1.2741 0.0000 4 6 1.3159 2.5763 -0.1238 5 6 3.3885 1.2767 0.1092 6 6 4.1445 -0.0266 0.1407 7 6 5.2207 -0.0087 -0.9141 8 8 5.3598 0.9662 -1.6220 9 7 6.0286 -1.0760 -1.0707 10 6 5.8603 -2.2538 -0.2160 11 6 7.0744 -1.0587 -2.0965 12 1 7.0441 -0.1266 -2.6606 13 6 6.9368 -2.2816 -3.0414 14 6 7.6588 -3.3853 -2.2289 15 7 8.7885 -2.6970 -1.5783 16 6 9.9471 -3.2906 -1.1536 17 1 9.9494 -4.3350 -0.8785 18 6 11.1188 -2.5501 -1.0769 19 7 12.0731 -2.9124 -0.2462 20 14 11.3409 -1.0394 -2.1529 21 1 10.7758 0.1476 -1.4623 22 1 12.7876 -0.8216 -2.4078 23 1 10.6359 -1.2431 -3.4440 24 6 8.4655 -1.2675 -1.4614 25 1 -0.5399 -0.9353 0.0045 26 1 -0.5399 0.9353 -0.0044 27 1 1.8688 -0.9353 0.0043 28 1 1.0511 2.9389 0.8694 29 1 1.9467 3.3118 -0.6228 30 1 0.4087 2.4199 -0.7073 31 1 3.9230 2.2128 0.1754 32 1 4.5999 -0.1588 1.1222 33 1 3.4576 -0.8499 -0.0550 34 1 5.1593 -2.9451 -0.6839 35 1 6.8231 -2.7471 -0.0833 36 1 5.4730 -1.9457 0.7552 37 1 5.8890 -2.5361 -3.2009 38 1 7.4422 -2.1010 -3.9902 39 1 8.0238 -4.1683 -2.8937 40 1 6.9889 -3.8067 -1.4796 41 1 12.8917 -2.3947 -0.1923 42 1 9.2090 -0.6747 -1.9943 43 1 8.4407 -0.9777 -0.4110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715023926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:21 Heat of formation + Delta-G solvation = 18.465534 kcal Electronic energy + Delta-G solvation = -22031.991090 eV Core-core repulsion = 18885.580658 eV Total energy + Delta-G solvation = -3146.410432 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.38132 -39.36959 -37.75428 -36.00213 -34.30779 -32.94311 -31.59174 -30.69581 -29.95040 -27.68836 -26.68921 -25.79063 -23.01624 -22.32121 -21.95777 -20.13354 -18.96763 -18.48838 -18.33326 -17.55526 -17.16461 -16.94657 -16.04764 -15.89703 -15.33469 -15.19463 -14.97052 -14.60056 -14.34985 -13.97701 -13.80244 -13.53196 -13.43652 -13.43278 -13.17982 -13.03336 -13.01092 -12.85207 -12.48966 -12.36573 -12.28833 -12.08915 -11.89261 -11.59593 -11.48368 -11.33155 -10.78048 -10.69649 -9.66728 -9.11338 -8.97889 -8.25907 -5.51781 0.46024 1.25458 1.33330 1.42503 1.59294 1.92284 2.24741 2.36893 2.95342 3.34243 3.59930 3.72962 3.75338 3.83683 4.01851 4.16101 4.17371 4.28952 4.37897 4.43012 4.51680 4.59131 4.68089 4.69463 4.75019 4.79810 4.81818 4.86815 4.93516 4.95786 4.99532 5.10631 5.16048 5.26036 5.50370 5.55860 5.60719 5.72818 5.83935 6.05712 6.08960 6.42813 6.74265 7.14600 7.49979 8.11055 8.94461 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031243 B = 0.003901 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.986408 B = 7176.760511 C = 7468.872724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.148 4.148 3 C -0.106 4.106 4 C -0.118 4.118 5 C -0.144 4.144 6 C -0.105 4.105 7 C 0.511 3.489 8 O -0.587 6.587 9 N -0.599 5.599 10 C 0.064 3.936 11 C 0.133 3.867 12 H 0.094 0.906 13 C -0.128 4.128 14 C 0.118 3.882 15 N -0.619 5.619 16 C -0.233 4.233 17 H 0.065 0.935 18 C -0.022 4.022 19 N -0.944 5.944 20 Si 0.931 3.069 21 H -0.285 1.285 22 H -0.305 1.305 23 H -0.269 1.269 24 C 0.115 3.885 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.127 0.873 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.263 0.737 42 H 0.012 0.988 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.039 4.482 0.770 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.106 4.106 4 C -0.175 4.175 5 C -0.162 4.162 6 C -0.143 4.143 7 C 0.302 3.698 8 O -0.468 6.468 9 N -0.331 5.331 10 C -0.077 4.077 11 C 0.028 3.972 12 H 0.112 0.888 13 C -0.167 4.167 14 C -0.006 4.006 15 N -0.347 5.347 16 C -0.361 4.361 17 H 0.083 0.917 18 C -0.218 4.218 19 N -0.589 5.589 20 Si 0.762 3.238 21 H -0.213 1.213 22 H -0.233 1.233 23 H -0.195 1.195 24 C -0.010 4.010 25 H 0.135 0.865 26 H 0.125 0.875 27 H 0.144 0.856 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -24.750 4.938 0.489 25.243 hybrid contribution 1.322 0.818 -0.414 1.609 sum -23.428 5.756 0.075 24.125 Atomic orbital electron populations 1.24663 0.95343 1.03165 0.97473 1.22104 0.95976 0.96127 1.02392 1.20826 0.93831 0.95639 1.00319 1.20838 1.00291 0.93611 1.02723 1.22762 0.94349 0.97502 1.01604 1.20878 0.95869 0.99138 0.98438 1.21308 0.82379 0.81328 0.84812 1.90648 1.72649 1.34711 1.48775 1.47890 1.32258 1.17393 1.35550 1.22249 1.03574 0.87225 0.94699 1.21825 0.85583 1.00333 0.89485 0.88806 1.23048 1.02045 0.94072 0.97512 1.22159 0.88966 0.94751 0.94682 1.44838 1.16414 1.03696 1.69709 1.18528 0.85063 0.96278 1.36259 0.91688 1.25670 0.95809 1.00853 0.99470 1.69969 1.09219 1.43243 1.36494 0.86092 0.75033 0.80992 0.81669 1.21274 1.23318 1.19489 1.21911 0.94458 0.86749 0.97906 0.86499 0.87521 0.85565 0.90391 0.92293 0.90481 0.87952 0.86151 0.85516 0.89779 0.91210 0.88842 0.87878 0.90454 0.93371 0.92135 0.92787 0.97021 0.95485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 14.07 66.64 0.94 -1.06 16 2 C -0.15 -2.23 9.31 23.43 0.22 -2.01 16 3 C -0.11 -1.96 5.98 -18.71 -0.11 -2.07 16 4 C -0.12 -1.80 9.39 71.24 0.67 -1.13 16 5 C -0.14 -3.12 8.43 24.51 0.21 -2.92 16 6 C -0.10 -2.07 4.50 29.10 0.13 -1.94 16 7 C 0.51 14.88 7.67 87.66 0.67 15.56 16 8 O -0.59 -22.02 15.40 -3.03 -0.05 -22.06 16 9 N -0.60 -17.31 2.82 -815.97 -2.30 -19.62 16 10 C 0.06 1.45 8.34 127.77 1.07 2.51 16 11 C 0.13 4.62 3.58 46.18 0.17 4.78 16 12 H 0.09 3.50 6.99 -2.39 -0.02 3.48 16 13 C -0.13 -3.84 6.53 31.98 0.21 -3.63 16 14 C 0.12 4.14 6.35 86.85 0.55 4.69 16 15 N -0.62 -28.65 2.65 -691.99 -1.83 -30.48 16 16 C -0.23 -13.03 10.49 84.04 0.88 -12.15 16 17 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 18 C -0.02 -1.28 5.40 84.86 0.46 -0.82 16 19 N -0.94 -59.13 13.97 21.65 0.30 -58.82 16 20 Si 0.93 48.18 24.81 68.60 1.70 49.88 16 21 H -0.29 -14.59 6.76 99.48 0.67 -13.91 16 22 H -0.30 -15.78 7.11 99.48 0.71 -15.08 16 23 H -0.27 -13.49 7.11 99.48 0.71 -12.79 16 24 C 0.12 5.06 4.94 86.73 0.43 5.49 16 25 H 0.12 0.99 8.06 -2.91 -0.02 0.97 16 26 H 0.11 1.10 6.31 -2.91 -0.02 1.08 16 27 H 0.13 1.59 5.80 -2.91 -0.02 1.58 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.99 8.07 -2.39 -0.02 0.97 16 30 H 0.08 0.98 6.66 -2.39 -0.02 0.96 16 31 H 0.10 2.52 8.05 -2.91 -0.02 2.50 16 32 H 0.12 1.96 7.40 -2.39 -0.02 1.94 16 33 H 0.13 1.86 5.27 -2.39 -0.01 1.84 16 34 H 0.08 1.42 7.99 -2.39 -0.02 1.40 16 35 H 0.07 2.06 5.19 -2.39 -0.01 2.05 16 36 H 0.09 1.57 6.44 -2.39 -0.02 1.56 16 37 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.06 1.86 5.54 -2.39 -0.01 1.85 16 41 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 42 H 0.01 0.59 3.46 -2.39 -0.01 0.58 16 43 H 0.03 1.26 8.04 -2.39 -0.02 1.24 16 Total: -1.00 -72.58 333.81 5.27 -67.31 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.96 Total: 8.48 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 6.48 Total: 5.30 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.83 Total: -108.92 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.70 Total: 49.88 kcal Total: -72.58 5.27 -67.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715023926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.780 kcal (2) G-P(sol) polarization free energy of solvation -72.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds