Wall clock time and date at job start Tue Mar 31 2020 00:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47123 * 120.00341 * 2 1 4 4 C 1.50705 * 119.99681 * 5.49916 * 3 2 1 5 5 C 1.32865 * 119.99943 * 185.50409 * 3 2 1 6 6 C 1.50698 * 120.00450 * 6.10540 * 5 3 2 7 7 C 1.50702 * 109.46958 * 126.04780 * 6 5 3 8 8 O 1.21286 * 120.00104 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99998 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99955 * 0.02562 * 9 7 6 11 11 C 1.46493 * 119.99996 * 180.02562 * 9 7 6 12 12 H 1.09004 * 110.64384 * 1.68915 * 11 9 7 13 13 C 1.55160 * 110.87615 * 124.93634 * 11 9 7 14 14 C 1.55126 * 101.48661 * 82.76166 * 13 11 9 15 15 N 1.47429 * 104.71896 * 37.30046 * 14 13 11 16 16 C 1.36939 * 125.64834 * 155.81579 * 15 14 13 17 17 H 1.07998 * 120.00238 * 195.36266 * 16 15 14 18 18 C 1.38811 * 120.00035 * 15.35775 * 16 15 14 19 19 N 1.31623 * 119.99798 * 28.02933 * 18 16 15 20 20 Si 1.86799 * 120.00289 * 207.75260 * 18 16 15 21 21 H 1.48497 * 109.47271 * 180.27428 * 20 18 16 22 22 H 1.48496 * 109.47080 * 300.27866 * 20 18 16 23 23 H 1.48506 * 109.47133 * 60.27540 * 20 18 16 24 24 C 1.47019 * 108.70447 * 335.55231 * 15 14 13 25 25 H 1.07995 * 119.99688 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00203 * 180.02562 * 1 2 3 27 27 H 1.08007 * 120.00025 * 179.97438 * 2 1 3 28 28 H 1.08991 * 109.46710 * 270.00294 * 4 3 2 29 29 H 1.09001 * 109.47033 * 30.00237 * 4 3 2 30 30 H 1.08998 * 109.46423 * 150.00087 * 4 3 2 31 31 H 1.08005 * 120.00040 * 186.11052 * 5 3 2 32 32 H 1.09000 * 109.46888 * 6.05653 * 6 5 3 33 33 H 1.08994 * 109.47512 * 246.04976 * 6 5 3 34 34 H 1.08999 * 109.46837 * 270.00297 * 10 9 7 35 35 H 1.09003 * 109.46757 * 30.00327 * 10 9 7 36 36 H 1.09000 * 109.46644 * 149.99812 * 10 9 7 37 37 H 1.08991 * 111.00775 * 201.00910 * 13 11 9 38 38 H 1.09004 * 110.99799 * 324.81916 * 13 11 9 39 39 H 1.08994 * 110.50258 * 278.46021 * 14 13 11 40 40 H 1.09001 * 110.34249 * 156.06138 * 14 13 11 41 41 H 0.96995 * 120.00395 * 5.68938 * 19 18 16 42 42 H 1.08997 * 109.88492 * 120.70431 * 24 15 14 43 43 H 1.08999 * 109.88202 * 241.87121 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2741 0.0000 4 6 1.3161 2.5762 0.1251 5 6 3.3884 1.2766 -0.1104 6 6 4.1252 -0.0114 -0.3734 7 6 5.0023 0.1507 -1.5881 8 8 5.0270 1.2081 -2.1816 9 7 5.7592 -0.8795 -2.0151 10 6 5.7289 -2.1571 -1.2985 11 6 6.6122 -0.7219 -3.1955 12 1 6.5401 0.2921 -3.5891 13 6 8.0855 -1.0787 -2.8648 14 6 8.0667 -2.6240 -2.9993 15 7 7.1652 -2.8902 -4.1350 16 6 7.1818 -4.0111 -4.9215 17 1 6.6625 -4.0142 -5.8684 18 6 7.8663 -5.1434 -4.5017 19 7 8.0202 -5.3806 -3.2162 20 14 8.5622 -6.3347 -5.7611 21 1 9.2368 -7.4571 -5.0608 22 1 7.4595 -6.8668 -6.6013 23 1 9.5436 -5.6272 -6.6223 24 6 6.2412 -1.7559 -4.2794 25 1 -0.5399 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8687 -0.9354 0.0004 28 1 1.0504 2.9393 -0.8677 29 1 0.4093 2.4195 0.7094 30 1 1.9474 3.3114 0.6240 31 1 3.9368 2.2019 -0.0115 32 1 3.4064 -0.8118 -0.5485 33 1 4.7425 -0.2597 0.4899 34 1 6.4928 -2.1557 -0.5210 35 1 4.7479 -2.2955 -0.8440 36 1 5.9235 -2.9704 -1.9977 37 1 8.7679 -0.6287 -3.5857 38 1 8.3412 -0.7793 -1.8483 39 1 7.6768 -3.0817 -2.0902 40 1 9.0679 -2.9979 -3.2139 41 1 7.5861 -4.8105 -2.5625 42 1 6.3512 -1.3117 -5.2687 43 1 5.2148 -2.0930 -4.1342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715023936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:25 Heat of formation + Delta-G solvation = 29.497994 kcal Electronic energy + Delta-G solvation = -22015.929109 eV Core-core repulsion = 18869.997080 eV Total energy + Delta-G solvation = -3145.932029 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.05362 -37.89770 -36.84681 -34.54633 -32.57522 -31.82754 -30.10543 -29.12425 -28.17586 -26.33740 -25.43410 -24.08105 -22.10895 -20.79580 -20.22661 -18.71674 -17.70887 -17.58195 -17.14357 -15.99290 -15.92175 -15.23371 -14.57693 -14.42803 -13.97164 -13.72932 -13.56968 -13.28783 -12.94729 -12.67245 -12.61743 -12.56610 -12.17083 -12.09849 -11.94520 -11.74961 -11.64343 -11.03403 -10.79000 -10.76087 -10.61601 -10.58729 -10.45264 -10.25763 -10.01896 -9.56725 -9.52442 -8.44554 -8.37488 -8.32337 -6.98004 -6.14236 -3.16984 1.20911 2.78394 2.84342 3.29510 3.48642 3.52985 3.70270 4.53002 4.56649 4.69654 4.73082 4.91998 5.13713 5.20952 5.26701 5.31621 5.33369 5.39377 5.44594 5.48650 5.53851 5.59905 5.61144 5.70764 5.78786 5.86112 6.05410 6.08467 6.14812 6.23414 6.29440 6.35575 6.44773 6.57140 6.60670 6.80079 6.89082 6.96202 7.00161 7.64104 7.76067 8.35609 8.45241 8.97800 9.77662 10.32438 11.19198 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.003701 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.160367 B = 7563.674224 C = 8001.743749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.113 4.113 5 C -0.113 4.113 6 C -0.118 4.118 7 C 0.516 3.484 8 O -0.548 6.548 9 N -0.596 5.596 10 C 0.068 3.932 11 C 0.126 3.874 12 H 0.102 0.898 13 C -0.146 4.146 14 C 0.136 3.864 15 N -0.602 5.602 16 C -0.336 4.336 17 H 0.065 0.935 18 C -0.024 4.024 19 N -0.917 5.917 20 Si 1.063 2.937 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.294 1.294 24 C 0.127 3.873 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.051 0.949 41 H 0.267 0.733 42 H 0.035 0.965 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.800 10.997 9.068 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.141 4.141 3 C -0.115 4.115 4 C -0.169 4.169 5 C -0.131 4.131 6 C -0.157 4.157 7 C 0.305 3.695 8 O -0.426 6.426 9 N -0.328 5.328 10 C -0.075 4.075 11 C 0.022 3.978 12 H 0.120 0.880 13 C -0.185 4.185 14 C 0.011 3.989 15 N -0.330 5.330 16 C -0.464 4.464 17 H 0.083 0.917 18 C -0.226 4.226 19 N -0.559 5.559 20 Si 0.893 3.107 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.222 1.222 24 C 0.001 3.999 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.882 10.067 8.485 15.882 hybrid contribution -0.929 1.171 0.140 1.501 sum -9.812 11.238 8.625 17.232 Atomic orbital electron populations 1.24404 0.95721 1.01974 1.00165 1.21997 0.95407 0.96392 1.00354 1.20549 0.93852 0.94333 1.02775 1.20763 0.99923 0.94167 1.02092 1.22829 0.94026 0.97818 0.98432 1.20870 0.99169 0.98433 0.97256 1.20489 0.80031 0.83473 0.85541 1.90657 1.66582 1.27175 1.58222 1.47824 1.43165 1.12616 1.29241 1.22103 1.00993 0.86547 0.97882 1.22103 0.89997 1.00393 0.85302 0.87983 1.23191 0.95141 0.99167 1.00982 1.21801 0.95204 0.90460 0.91428 1.44593 1.34294 1.18125 1.35982 1.19747 1.36174 0.90872 0.99559 0.91723 1.25706 1.00330 0.96809 0.99718 1.70821 1.46135 1.38145 1.00756 0.83540 0.76569 0.75864 0.74712 1.21093 1.22056 1.22151 1.21654 0.93973 0.88888 0.95424 0.88167 0.88161 0.86506 0.91341 0.91878 0.91700 0.86280 0.88015 0.88013 0.92620 0.91930 0.88220 0.90587 0.91599 0.94757 0.93093 0.92187 0.94727 0.95413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 14.07 28.88 0.41 -1.24 16 2 C -0.12 -1.26 9.21 -37.83 -0.35 -1.61 16 3 C -0.11 -1.25 5.98 -102.87 -0.61 -1.86 16 4 C -0.11 -1.01 9.38 36.01 0.34 -0.67 16 5 C -0.11 -1.33 8.43 -36.16 -0.30 -1.64 16 6 C -0.12 -1.40 4.48 -29.03 -0.13 -1.53 16 7 C 0.52 8.21 7.67 -10.98 -0.08 8.13 16 8 O -0.55 -10.43 15.40 5.55 0.09 -10.34 16 9 N -0.60 -9.80 2.83 -171.83 -0.49 -10.29 16 10 C 0.07 1.02 8.34 59.85 0.50 1.52 16 11 C 0.13 2.31 3.57 -66.10 -0.24 2.07 16 12 H 0.10 1.89 6.99 -51.93 -0.36 1.53 16 13 C -0.15 -2.64 6.55 -24.46 -0.16 -2.80 16 14 C 0.14 3.03 4.40 -2.41 -0.01 3.02 16 15 N -0.60 -14.87 2.89 -169.94 -0.49 -15.36 16 16 C -0.34 -9.33 10.03 -15.06 -0.15 -9.48 16 17 H 0.06 1.81 7.97 -52.49 -0.42 1.39 16 18 C -0.02 -0.68 5.08 -17.43 -0.09 -0.77 16 19 N -0.92 -26.69 12.90 55.49 0.72 -25.98 16 20 Si 1.06 25.04 30.00 -169.99 -5.10 19.94 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.13 2.71 6.24 -3.06 -0.02 2.69 16 25 H 0.10 0.80 6.31 -52.49 -0.33 0.46 16 26 H 0.10 0.77 8.06 -52.49 -0.42 0.34 16 27 H 0.12 1.12 5.99 -52.48 -0.31 0.80 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.48 6.67 -51.93 -0.35 0.13 16 30 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 31 H 0.12 1.42 8.04 -52.48 -0.42 1.00 16 32 H 0.10 1.10 4.66 -51.93 -0.24 0.86 16 33 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.06 0.77 7.99 -51.93 -0.41 0.35 16 35 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 36 H 0.10 1.90 5.20 -51.93 -0.27 1.63 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.03 0.77 4.21 -51.93 -0.22 0.56 16 40 H 0.05 1.27 7.87 -51.93 -0.41 0.86 16 41 H 0.27 7.61 5.98 -40.82 -0.24 7.36 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -31.80 337.91 -7.58 -39.38 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.49 Total: 1.72 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -0.90 Total: -4.18 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.26 Total: -51.62 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.10 Total: 19.94 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.80 -7.58 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715023936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.877 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds