Wall clock time and date at job start Tue Mar 31 2020 00:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47123 * 120.00341 * 2 1 4 4 C 1.50705 * 119.99681 * 5.49916 * 3 2 1 5 5 C 1.32865 * 119.99943 * 185.50409 * 3 2 1 6 6 C 1.50698 * 120.00450 * 6.10540 * 5 3 2 7 7 C 1.50702 * 109.46958 * 126.04780 * 6 5 3 8 8 O 1.21286 * 120.00104 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99998 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99955 * 0.02562 * 9 7 6 11 11 C 1.46493 * 119.99996 * 180.02562 * 9 7 6 12 12 H 1.09004 * 110.64384 * 1.68915 * 11 9 7 13 13 C 1.55160 * 110.87615 * 124.93634 * 11 9 7 14 14 C 1.55126 * 101.48661 * 82.76166 * 13 11 9 15 15 N 1.47429 * 104.71896 * 37.30046 * 14 13 11 16 16 C 1.36939 * 125.64834 * 155.81579 * 15 14 13 17 17 H 1.07998 * 120.00238 * 195.36266 * 16 15 14 18 18 C 1.38811 * 120.00035 * 15.35775 * 16 15 14 19 19 N 1.31623 * 119.99798 * 28.02933 * 18 16 15 20 20 Si 1.86799 * 120.00289 * 207.75260 * 18 16 15 21 21 H 1.48497 * 109.47271 * 180.27428 * 20 18 16 22 22 H 1.48496 * 109.47080 * 300.27866 * 20 18 16 23 23 H 1.48506 * 109.47133 * 60.27540 * 20 18 16 24 24 C 1.47019 * 108.70447 * 335.55231 * 15 14 13 25 25 H 1.07995 * 119.99688 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00203 * 180.02562 * 1 2 3 27 27 H 1.08007 * 120.00025 * 179.97438 * 2 1 3 28 28 H 1.08991 * 109.46710 * 270.00294 * 4 3 2 29 29 H 1.09001 * 109.47033 * 30.00237 * 4 3 2 30 30 H 1.08998 * 109.46423 * 150.00087 * 4 3 2 31 31 H 1.08005 * 120.00040 * 186.11052 * 5 3 2 32 32 H 1.09000 * 109.46888 * 6.05653 * 6 5 3 33 33 H 1.08994 * 109.47512 * 246.04976 * 6 5 3 34 34 H 1.08999 * 109.46837 * 270.00297 * 10 9 7 35 35 H 1.09003 * 109.46757 * 30.00327 * 10 9 7 36 36 H 1.09000 * 109.46644 * 149.99812 * 10 9 7 37 37 H 1.08991 * 111.00775 * 201.00910 * 13 11 9 38 38 H 1.09004 * 110.99799 * 324.81916 * 13 11 9 39 39 H 1.08994 * 110.50258 * 278.46021 * 14 13 11 40 40 H 1.09001 * 110.34249 * 156.06138 * 14 13 11 41 41 H 0.96995 * 120.00395 * 5.68938 * 19 18 16 42 42 H 1.08997 * 109.88492 * 120.70431 * 24 15 14 43 43 H 1.08999 * 109.88202 * 241.87121 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2741 0.0000 4 6 1.3161 2.5762 0.1251 5 6 3.3884 1.2766 -0.1104 6 6 4.1252 -0.0114 -0.3734 7 6 5.0023 0.1507 -1.5881 8 8 5.0270 1.2081 -2.1816 9 7 5.7592 -0.8795 -2.0151 10 6 5.7289 -2.1571 -1.2985 11 6 6.6122 -0.7219 -3.1955 12 1 6.5401 0.2921 -3.5891 13 6 8.0855 -1.0787 -2.8648 14 6 8.0667 -2.6240 -2.9993 15 7 7.1652 -2.8902 -4.1350 16 6 7.1818 -4.0111 -4.9215 17 1 6.6625 -4.0142 -5.8684 18 6 7.8663 -5.1434 -4.5017 19 7 8.0202 -5.3806 -3.2162 20 14 8.5622 -6.3347 -5.7611 21 1 9.2368 -7.4571 -5.0608 22 1 7.4595 -6.8668 -6.6013 23 1 9.5436 -5.6272 -6.6223 24 6 6.2412 -1.7559 -4.2794 25 1 -0.5399 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8687 -0.9354 0.0004 28 1 1.0504 2.9393 -0.8677 29 1 0.4093 2.4195 0.7094 30 1 1.9474 3.3114 0.6240 31 1 3.9368 2.2019 -0.0115 32 1 3.4064 -0.8118 -0.5485 33 1 4.7425 -0.2597 0.4899 34 1 6.4928 -2.1557 -0.5210 35 1 4.7479 -2.2955 -0.8440 36 1 5.9235 -2.9704 -1.9977 37 1 8.7679 -0.6287 -3.5857 38 1 8.3412 -0.7793 -1.8483 39 1 7.6768 -3.0817 -2.0902 40 1 9.0679 -2.9979 -3.2139 41 1 7.5861 -4.8105 -2.5625 42 1 6.3512 -1.3117 -5.2687 43 1 5.2148 -2.0930 -4.1342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715023936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:24 Heat of formation + Delta-G solvation = 11.634353 kcal Electronic energy + Delta-G solvation = -22016.703735 eV Core-core repulsion = 18869.997080 eV Total energy + Delta-G solvation = -3146.706655 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.40048 -39.37094 -37.78082 -36.12766 -34.25356 -32.86284 -31.20928 -30.68190 -29.71090 -27.66840 -26.63810 -25.82465 -22.97155 -22.13934 -22.05093 -20.06861 -19.60936 -18.52067 -18.36613 -17.30853 -17.02578 -16.49611 -16.02870 -15.72931 -15.62516 -15.19695 -15.08759 -14.39962 -14.24612 -14.02009 -13.74543 -13.53836 -13.46808 -13.39723 -13.12158 -12.99531 -12.65791 -12.57163 -12.50703 -12.43796 -12.11220 -11.96247 -11.84754 -11.57652 -11.54134 -11.33853 -10.83531 -10.50923 -9.73416 -9.14399 -9.01264 -8.32394 -5.32065 0.42236 1.55243 1.58683 1.65647 1.84880 1.88046 2.20556 2.63442 3.18989 3.44148 3.61242 3.72705 3.72863 3.87758 3.98852 4.07393 4.15444 4.25725 4.37596 4.43296 4.48395 4.54260 4.58429 4.66613 4.76642 4.77155 4.80013 4.80452 4.89501 4.92656 4.98560 5.08375 5.14365 5.24274 5.46798 5.51235 5.56341 5.65890 5.80724 6.02378 6.33751 6.37865 6.90681 7.09690 7.69479 8.27359 9.01541 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.003701 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.160367 B = 7563.674224 C = 8001.743749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.151 4.151 3 C -0.109 4.109 4 C -0.116 4.116 5 C -0.139 4.139 6 C -0.107 4.107 7 C 0.515 3.485 8 O -0.582 6.582 9 N -0.599 5.599 10 C 0.072 3.928 11 C 0.137 3.863 12 H 0.104 0.896 13 C -0.129 4.129 14 C 0.142 3.858 15 N -0.618 5.618 16 C -0.351 4.351 17 H 0.054 0.946 18 C -0.070 4.070 19 N -0.940 5.940 20 Si 1.113 2.887 21 H -0.289 1.289 22 H -0.277 1.277 23 H -0.285 1.285 24 C 0.129 3.871 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.035 0.965 40 H 0.018 0.982 41 H 0.260 0.740 42 H 0.031 0.969 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.827 11.441 9.997 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.109 4.109 4 C -0.172 4.172 5 C -0.157 4.157 6 C -0.146 4.146 7 C 0.305 3.695 8 O -0.462 6.462 9 N -0.330 5.330 10 C -0.070 4.070 11 C 0.032 3.968 12 H 0.122 0.878 13 C -0.168 4.168 14 C 0.017 3.983 15 N -0.346 5.346 16 C -0.479 4.479 17 H 0.072 0.928 18 C -0.267 4.267 19 N -0.582 5.582 20 Si 0.937 3.063 21 H -0.215 1.215 22 H -0.203 1.203 23 H -0.211 1.211 24 C 0.003 3.997 25 H 0.128 0.872 26 H 0.132 0.868 27 H 0.139 0.861 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.052 0.948 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -9.931 10.531 9.428 17.275 hybrid contribution -0.747 1.068 -0.145 1.311 sum -10.677 11.599 9.283 18.295 Atomic orbital electron populations 1.24665 0.95405 1.03140 0.97566 1.22119 0.96070 0.96308 1.02335 1.20839 0.93765 0.95421 1.00880 1.20831 1.00527 0.93505 1.02368 1.22785 0.94496 0.97578 1.00862 1.20858 0.98853 0.99004 0.95865 1.21210 0.79573 0.82522 0.86175 1.90639 1.67557 1.28490 1.59548 1.47876 1.43058 1.13407 1.28688 1.22085 1.03480 0.84455 0.97016 1.21843 0.90337 0.99156 0.85438 0.87818 1.23085 0.95260 0.95791 1.02650 1.21739 0.92833 0.93203 0.90507 1.44753 1.35599 1.18026 1.36240 1.19951 1.36196 0.92129 0.99626 0.92762 1.26974 1.00507 0.98534 1.00642 1.70901 1.47250 1.38757 1.01337 0.82877 0.76442 0.74014 0.72926 1.21498 1.20336 1.21117 1.21689 0.92808 0.88698 0.96553 0.87233 0.86841 0.86086 0.91454 0.90372 0.91115 0.87038 0.86762 0.85666 0.90992 0.88737 0.92248 0.89939 0.89178 0.94788 0.96383 0.92916 0.95090 0.96535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 14.07 66.64 0.94 -1.63 16 2 C -0.15 -2.73 9.21 23.43 0.22 -2.51 16 3 C -0.11 -2.18 5.98 -18.70 -0.11 -2.29 16 4 C -0.12 -1.85 9.38 71.24 0.67 -1.19 16 5 C -0.14 -3.09 8.43 24.51 0.21 -2.88 16 6 C -0.11 -2.31 4.48 29.10 0.13 -2.18 16 7 C 0.51 15.65 7.67 87.66 0.67 16.32 16 8 O -0.58 -21.72 15.40 -3.05 -0.05 -21.77 16 9 N -0.60 -18.93 2.83 -815.92 -2.31 -21.23 16 10 C 0.07 2.08 8.34 127.77 1.07 3.14 16 11 C 0.14 4.93 3.57 46.18 0.16 5.10 16 12 H 0.10 3.77 6.99 -2.38 -0.02 3.75 16 13 C -0.13 -4.56 6.55 32.06 0.21 -4.35 16 14 C 0.14 6.40 4.40 86.93 0.38 6.78 16 15 N -0.62 -31.11 2.89 -691.56 -2.00 -33.11 16 16 C -0.35 -19.85 10.03 84.03 0.84 -19.01 16 17 H 0.05 3.11 7.97 -2.91 -0.02 3.08 16 18 C -0.07 -3.93 5.08 84.86 0.43 -3.50 16 19 N -0.94 -55.51 12.90 21.65 0.28 -55.23 16 20 Si 1.11 50.78 30.00 68.60 2.06 52.84 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 C 0.13 5.55 6.24 86.73 0.54 6.09 16 25 H 0.11 1.41 6.31 -2.91 -0.02 1.39 16 26 H 0.11 1.39 8.06 -2.91 -0.02 1.37 16 27 H 0.12 2.02 5.99 -2.91 -0.02 2.01 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 0.99 6.67 -2.39 -0.02 0.98 16 30 H 0.07 1.04 8.06 -2.39 -0.02 1.02 16 31 H 0.11 2.60 8.04 -2.91 -0.02 2.58 16 32 H 0.11 2.19 4.66 -2.39 -0.01 2.18 16 33 H 0.13 2.10 8.11 -2.39 -0.02 2.08 16 34 H 0.07 1.84 7.99 -2.39 -0.02 1.82 16 35 H 0.09 2.08 6.44 -2.39 -0.02 2.07 16 36 H 0.06 2.26 5.20 -2.39 -0.01 2.24 16 37 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 39 H 0.03 1.55 4.21 -2.39 -0.01 1.54 16 40 H 0.02 0.91 7.87 -2.39 -0.02 0.89 16 41 H 0.26 15.19 5.98 -92.71 -0.55 14.64 16 42 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.02 0.75 8.04 -2.39 -0.02 0.73 16 Total: -1.00 -69.27 337.91 5.55 -63.72 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 1.21 Total: 16.88 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 6.36 Total: -2.10 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -4.02 Total: -109.57 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.06 Total: 52.84 kcal Total: -69.27 5.55 -63.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715023936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.355 kcal (2) G-P(sol) polarization free energy of solvation -69.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds