Wall clock time and date at job start Tue Mar 31 2020 00:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32867 * 1 3 3 C 1.47118 * 119.99756 * 2 1 4 4 C 1.50697 * 120.00106 * 0.02562 * 3 2 1 5 5 C 1.32868 * 120.00122 * 179.97438 * 3 2 1 6 6 C 1.50697 * 120.00655 * 185.54832 * 5 3 2 7 7 C 1.50703 * 109.47335 * 125.59769 * 6 5 3 8 8 O 1.21283 * 119.99846 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99696 * 180.02562 * 7 6 5 10 10 C 1.46491 * 120.00453 * 0.02562 * 9 7 6 11 11 C 1.46499 * 119.99565 * 180.02562 * 9 7 6 12 12 H 1.08998 * 110.64356 * 1.68747 * 11 9 7 13 13 C 1.55155 * 110.87517 * 124.93790 * 11 9 7 14 14 C 1.55130 * 101.48553 * 82.76427 * 13 11 9 15 15 N 1.47420 * 104.72131 * 37.29841 * 14 13 11 16 16 C 1.36936 * 125.64454 * 155.81866 * 15 14 13 17 17 H 1.08004 * 119.99791 * 191.29242 * 16 15 14 18 18 C 1.38812 * 120.00540 * 11.28849 * 16 15 14 19 19 N 1.31617 * 119.99565 * 9.31680 * 18 16 15 20 20 Si 1.86802 * 120.00120 * 189.04386 * 18 16 15 21 21 H 1.48503 * 109.46660 * 265.28578 * 20 18 16 22 22 H 1.48493 * 109.47427 * 25.28755 * 20 18 16 23 23 H 1.48506 * 109.46942 * 145.28906 * 20 18 16 24 24 C 1.47024 * 108.70445 * 335.55203 * 15 14 13 25 25 H 1.08002 * 120.00310 * 359.97438 * 1 2 3 26 26 H 1.08006 * 120.00323 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00083 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46734 * 214.40224 * 4 3 2 29 29 H 1.09004 * 109.46872 * 334.39397 * 4 3 2 30 30 H 1.08994 * 109.47618 * 94.40329 * 4 3 2 31 31 H 1.08008 * 119.99763 * 5.54967 * 5 3 2 32 32 H 1.09006 * 109.46329 * 5.60089 * 6 5 3 33 33 H 1.08992 * 109.47529 * 245.60290 * 6 5 3 34 34 H 1.08993 * 109.47548 * 269.99984 * 10 9 7 35 35 H 1.09005 * 109.46984 * 30.00022 * 10 9 7 36 36 H 1.09007 * 109.47269 * 149.99915 * 10 9 7 37 37 H 1.08997 * 111.00635 * 201.00803 * 13 11 9 38 38 H 1.09001 * 111.00116 * 324.81736 * 13 11 9 39 39 H 1.09002 * 110.49570 * 278.45673 * 14 13 11 40 40 H 1.09004 * 110.33982 * 156.06706 * 14 13 11 41 41 H 0.97004 * 119.99691 * 179.72692 * 19 18 16 42 42 H 1.09001 * 109.87631 * 120.70546 * 24 15 14 43 43 H 1.08997 * 109.88021 * 241.86846 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3107 2.5792 0.0006 5 6 3.3929 1.2742 0.0005 6 6 4.1464 2.5731 0.1267 7 6 5.1134 2.4831 1.2790 8 8 5.1841 1.4642 1.9332 9 7 5.8996 3.5348 1.5827 10 6 5.8138 4.7657 0.7930 11 6 6.8400 3.4471 2.7025 12 1 6.7989 2.4597 3.1624 13 6 8.2835 3.7773 2.2394 14 6 8.2736 5.3281 2.2793 15 7 7.4608 5.6672 3.4614 16 6 7.5361 6.8345 4.1735 17 1 7.0344 6.9192 5.1261 18 6 8.2574 7.9088 3.6710 19 7 8.7138 7.8754 2.4370 20 14 8.5737 9.4050 4.7437 21 1 7.5319 10.4306 4.4822 22 1 8.5288 9.0074 6.1737 23 1 9.9116 9.9667 4.4278 24 6 6.5514 4.5474 3.7454 25 1 -0.5401 0.9353 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8687 -0.9353 -0.0004 28 1 1.8632 3.3179 -0.5801 29 1 0.3262 2.4305 -0.4432 30 1 1.1977 2.9331 1.0252 31 1 3.9330 0.3432 -0.0895 32 1 3.4421 3.3856 0.3059 33 1 4.6960 2.7654 -0.7947 34 1 6.5163 4.7135 -0.0387 35 1 4.8010 4.8795 0.4065 36 1 6.0602 5.6200 1.4236 37 1 9.0192 3.3700 2.9330 38 1 8.4616 3.4147 1.2270 39 1 7.8153 5.7301 1.3757 40 1 9.2878 5.7106 2.3937 41 1 9.2144 8.6278 2.0845 42 1 6.7368 4.1649 4.7491 43 1 5.5167 4.8789 3.6580 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715023939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:29 Heat of formation + Delta-G solvation = 30.464264 kcal Electronic energy + Delta-G solvation = -21911.599482 eV Core-core repulsion = 18765.709353 eV Total energy + Delta-G solvation = -3145.890128 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.94091 -37.72131 -36.75757 -34.36609 -32.70569 -31.93561 -29.44964 -28.74970 -27.96060 -26.72029 -25.95490 -24.23245 -21.77463 -20.28955 -20.07075 -18.51629 -17.95604 -17.12643 -16.88977 -16.21911 -15.72465 -14.99187 -14.71408 -14.44127 -13.90799 -13.80425 -13.42810 -13.33223 -12.84059 -12.61916 -12.39656 -12.21558 -12.01278 -11.79388 -11.68911 -11.59388 -11.52538 -11.05451 -10.94737 -10.87683 -10.80794 -10.62387 -10.32422 -10.07815 -9.96489 -9.69959 -9.41345 -8.62213 -8.31239 -8.21898 -6.83634 -5.80085 -3.12510 1.23658 2.84654 2.90440 3.36258 3.39802 3.43314 3.45110 4.46533 4.57057 4.73856 4.80625 5.09533 5.18081 5.20959 5.35764 5.39418 5.42004 5.47257 5.51351 5.57909 5.60947 5.70804 5.73806 5.85709 5.88283 5.94085 6.23143 6.24448 6.29160 6.35734 6.36846 6.53048 6.57790 6.60597 6.71543 6.83566 7.05124 7.42999 7.52718 7.73641 7.76180 8.21077 8.44575 9.14993 9.76344 10.44087 11.33162 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031927 B = 0.003495 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.790480 B = 8009.772659 C = 8323.500662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.117 4.117 4 C -0.123 4.123 5 C -0.111 4.111 6 C -0.117 4.117 7 C 0.515 3.485 8 O -0.550 6.550 9 N -0.595 5.595 10 C 0.067 3.933 11 C 0.126 3.874 12 H 0.099 0.901 13 C -0.156 4.156 14 C 0.166 3.834 15 N -0.602 5.602 16 C -0.229 4.229 17 H 0.075 0.925 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.126 3.874 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.065 0.935 41 H 0.253 0.747 42 H 0.033 0.967 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.054 -10.645 -7.922 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.179 4.179 5 C -0.129 4.129 6 C -0.156 4.156 7 C 0.304 3.696 8 O -0.429 6.429 9 N -0.327 5.327 10 C -0.075 4.075 11 C 0.022 3.978 12 H 0.117 0.883 13 C -0.196 4.196 14 C 0.041 3.959 15 N -0.329 5.329 16 C -0.357 4.357 17 H 0.093 0.907 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.206 1.206 23 H -0.216 1.216 24 C 0.000 4.000 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.131 0.869 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.910 -10.949 -7.587 17.218 hybrid contribution 0.244 0.911 0.466 1.052 sum -10.667 -10.038 -7.120 16.286 Atomic orbital electron populations 1.24377 0.95710 1.01907 1.01130 1.21855 0.95274 0.96081 0.99601 1.20529 0.93902 0.94329 1.02936 1.20892 1.00091 0.94574 1.02380 1.22828 0.93844 0.97876 0.98348 1.20844 0.98345 0.98129 0.98329 1.20447 0.80978 0.83005 0.85206 1.90656 1.69049 1.30240 1.52911 1.47826 1.38567 1.14143 1.32118 1.22129 1.00657 0.88183 0.96554 1.22096 0.88946 1.00003 0.86709 0.88296 1.23377 0.94828 1.01056 1.00323 1.21645 0.97221 0.87000 0.90013 1.44519 1.40378 1.14957 1.32999 1.19008 1.28545 0.88476 0.99691 0.90740 1.24805 1.01439 0.97744 0.96228 1.69939 1.41651 1.31346 1.13556 0.86136 0.77401 0.82716 0.79697 1.21645 1.20634 1.21642 1.21646 0.94232 0.88747 0.95406 0.88083 0.88305 0.86895 0.91296 0.91583 0.91354 0.86472 0.87987 0.87981 0.92696 0.92237 0.87631 0.91073 0.91953 0.94403 0.91637 0.93711 0.94966 0.95517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 14.11 28.88 0.41 -1.26 16 2 C -0.11 -1.11 9.83 -37.83 -0.37 -1.48 16 3 C -0.12 -1.28 5.98 -102.87 -0.62 -1.90 16 4 C -0.12 -1.14 8.55 36.00 0.31 -0.83 16 5 C -0.11 -1.32 8.45 -36.16 -0.31 -1.63 16 6 C -0.12 -1.38 4.33 -29.03 -0.13 -1.51 16 7 C 0.52 8.25 7.67 -10.99 -0.08 8.16 16 8 O -0.55 -10.56 15.40 5.55 0.09 -10.48 16 9 N -0.59 -9.86 2.82 -171.84 -0.49 -10.34 16 10 C 0.07 1.03 8.34 59.84 0.50 1.53 16 11 C 0.13 2.34 3.57 -66.10 -0.24 2.10 16 12 H 0.10 1.86 6.99 -51.93 -0.36 1.50 16 13 C -0.16 -2.93 6.55 -24.46 -0.16 -3.09 16 14 C 0.17 3.78 4.53 -2.41 -0.01 3.77 16 15 N -0.60 -14.77 2.98 -169.93 -0.51 -15.27 16 16 C -0.23 -6.20 10.23 -15.06 -0.15 -6.35 16 17 H 0.07 1.98 7.84 -52.48 -0.41 1.57 16 18 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 19 N -0.92 -25.76 10.73 55.49 0.60 -25.17 16 20 Si 0.91 21.58 29.56 -169.99 -5.03 16.55 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.13 2.66 6.24 -3.06 -0.02 2.64 16 25 H 0.10 0.80 6.07 -52.49 -0.32 0.48 16 26 H 0.10 0.70 8.06 -52.48 -0.42 0.28 16 27 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.07 0.57 6.65 -51.93 -0.35 0.23 16 29 H 0.07 0.52 6.22 -51.93 -0.32 0.20 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.12 1.44 8.05 -52.48 -0.42 1.02 16 32 H 0.10 1.08 5.02 -51.93 -0.26 0.82 16 33 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.05 0.78 7.99 -51.93 -0.41 0.37 16 35 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 36 H 0.11 2.03 5.20 -51.92 -0.27 1.76 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.04 0.89 5.43 -51.93 -0.28 0.61 16 40 H 0.07 1.70 7.02 -51.93 -0.36 1.33 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -30.50 338.68 -7.82 -38.31 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.62 Total: 1.38 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -0.96 Total: -0.08 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.40 Total: -50.78 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.50 -7.82 -38.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715023939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.777 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds