Wall clock time and date at job start Tue Mar 31 2020 00:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32867 * 1 3 3 C 1.47118 * 119.99756 * 2 1 4 4 C 1.50697 * 120.00106 * 0.02562 * 3 2 1 5 5 C 1.32868 * 120.00122 * 179.97438 * 3 2 1 6 6 C 1.50697 * 120.00655 * 185.54832 * 5 3 2 7 7 C 1.50703 * 109.47335 * 125.59769 * 6 5 3 8 8 O 1.21283 * 119.99846 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99696 * 180.02562 * 7 6 5 10 10 C 1.46491 * 120.00453 * 0.02562 * 9 7 6 11 11 C 1.46499 * 119.99565 * 180.02562 * 9 7 6 12 12 H 1.08998 * 110.64356 * 1.68747 * 11 9 7 13 13 C 1.55155 * 110.87517 * 124.93790 * 11 9 7 14 14 C 1.55130 * 101.48553 * 82.76427 * 13 11 9 15 15 N 1.47420 * 104.72131 * 37.29841 * 14 13 11 16 16 C 1.36936 * 125.64454 * 155.81866 * 15 14 13 17 17 H 1.08004 * 119.99791 * 191.29242 * 16 15 14 18 18 C 1.38812 * 120.00540 * 11.28849 * 16 15 14 19 19 N 1.31617 * 119.99565 * 9.31680 * 18 16 15 20 20 Si 1.86802 * 120.00120 * 189.04386 * 18 16 15 21 21 H 1.48503 * 109.46660 * 265.28578 * 20 18 16 22 22 H 1.48493 * 109.47427 * 25.28755 * 20 18 16 23 23 H 1.48506 * 109.46942 * 145.28906 * 20 18 16 24 24 C 1.47024 * 108.70445 * 335.55203 * 15 14 13 25 25 H 1.08002 * 120.00310 * 359.97438 * 1 2 3 26 26 H 1.08006 * 120.00323 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00083 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46734 * 214.40224 * 4 3 2 29 29 H 1.09004 * 109.46872 * 334.39397 * 4 3 2 30 30 H 1.08994 * 109.47618 * 94.40329 * 4 3 2 31 31 H 1.08008 * 119.99763 * 5.54967 * 5 3 2 32 32 H 1.09006 * 109.46329 * 5.60089 * 6 5 3 33 33 H 1.08992 * 109.47529 * 245.60290 * 6 5 3 34 34 H 1.08993 * 109.47548 * 269.99984 * 10 9 7 35 35 H 1.09005 * 109.46984 * 30.00022 * 10 9 7 36 36 H 1.09007 * 109.47269 * 149.99915 * 10 9 7 37 37 H 1.08997 * 111.00635 * 201.00803 * 13 11 9 38 38 H 1.09001 * 111.00116 * 324.81736 * 13 11 9 39 39 H 1.09002 * 110.49570 * 278.45673 * 14 13 11 40 40 H 1.09004 * 110.33982 * 156.06706 * 14 13 11 41 41 H 0.97004 * 119.99691 * 179.72692 * 19 18 16 42 42 H 1.09001 * 109.87631 * 120.70546 * 24 15 14 43 43 H 1.08997 * 109.88021 * 241.86846 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3107 2.5792 0.0006 5 6 3.3929 1.2742 0.0005 6 6 4.1464 2.5731 0.1267 7 6 5.1134 2.4831 1.2790 8 8 5.1841 1.4642 1.9332 9 7 5.8996 3.5348 1.5827 10 6 5.8138 4.7657 0.7930 11 6 6.8400 3.4471 2.7025 12 1 6.7989 2.4597 3.1624 13 6 8.2835 3.7773 2.2394 14 6 8.2736 5.3281 2.2793 15 7 7.4608 5.6672 3.4614 16 6 7.5361 6.8345 4.1735 17 1 7.0344 6.9192 5.1261 18 6 8.2574 7.9088 3.6710 19 7 8.7138 7.8754 2.4370 20 14 8.5737 9.4050 4.7437 21 1 7.5319 10.4306 4.4822 22 1 8.5288 9.0074 6.1737 23 1 9.9116 9.9667 4.4278 24 6 6.5514 4.5474 3.7454 25 1 -0.5401 0.9353 0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8687 -0.9353 -0.0004 28 1 1.8632 3.3179 -0.5801 29 1 0.3262 2.4305 -0.4432 30 1 1.1977 2.9331 1.0252 31 1 3.9330 0.3432 -0.0895 32 1 3.4421 3.3856 0.3059 33 1 4.6960 2.7654 -0.7947 34 1 6.5163 4.7135 -0.0387 35 1 4.8010 4.8795 0.4065 36 1 6.0602 5.6200 1.4236 37 1 9.0192 3.3700 2.9330 38 1 8.4616 3.4147 1.2270 39 1 7.8153 5.7301 1.3757 40 1 9.2878 5.7106 2.3937 41 1 9.2144 8.6278 2.0845 42 1 6.7368 4.1649 4.7491 43 1 5.5167 4.8789 3.6580 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715023939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:28 Heat of formation + Delta-G solvation = 13.777268 kcal Electronic energy + Delta-G solvation = -21912.323084 eV Core-core repulsion = 18765.709353 eV Total energy + Delta-G solvation = -3146.613731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.28293 -39.17304 -37.71250 -35.93143 -34.12871 -33.22839 -31.12784 -29.94515 -29.30352 -27.69630 -27.37553 -26.01721 -22.89449 -22.09057 -21.26231 -19.82921 -18.89332 -18.81607 -18.23814 -17.31711 -17.02257 -16.71711 -16.10257 -15.71053 -15.52767 -14.94724 -14.61924 -14.34585 -14.05385 -13.87614 -13.75715 -13.58054 -13.36820 -13.26496 -13.11429 -12.92509 -12.75584 -12.53968 -12.39968 -12.25081 -12.06900 -11.86717 -11.84600 -11.71066 -11.55599 -11.37187 -10.76069 -10.62255 -9.62535 -9.09732 -8.82370 -7.87170 -5.20920 0.45025 1.47755 1.49075 1.58153 1.62980 1.96280 2.26040 2.50661 3.33174 3.60162 3.74091 3.78161 3.87937 4.00093 4.04271 4.22732 4.29831 4.38750 4.44453 4.46528 4.59795 4.64470 4.68093 4.71473 4.80395 4.89554 4.90359 4.95134 5.01032 5.03665 5.14173 5.16934 5.46256 5.49645 5.57630 5.61452 5.63313 5.78160 5.81242 6.06100 6.21278 6.48535 7.10405 7.18015 7.76162 8.43432 9.24459 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031927 B = 0.003495 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.790480 B = 8009.772659 C = 8323.500662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.142 4.142 3 C -0.110 4.110 4 C -0.126 4.126 5 C -0.138 4.138 6 C -0.105 4.105 7 C 0.514 3.486 8 O -0.585 6.585 9 N -0.597 5.597 10 C 0.073 3.927 11 C 0.136 3.864 12 H 0.100 0.900 13 C -0.140 4.140 14 C 0.175 3.825 15 N -0.617 5.617 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.054 4.054 19 N -0.940 5.940 20 Si 0.973 3.027 21 H -0.286 1.286 22 H -0.275 1.275 23 H -0.293 1.293 24 C 0.128 3.872 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.249 0.751 42 H 0.031 0.969 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.673 -10.901 -8.729 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.110 4.110 4 C -0.183 4.183 5 C -0.156 4.156 6 C -0.144 4.144 7 C 0.304 3.696 8 O -0.466 6.466 9 N -0.329 5.329 10 C -0.069 4.069 11 C 0.032 3.968 12 H 0.117 0.883 13 C -0.180 4.180 14 C 0.050 3.950 15 N -0.344 5.344 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.248 4.248 19 N -0.588 5.588 20 Si 0.801 3.199 21 H -0.213 1.213 22 H -0.200 1.200 23 H -0.219 1.219 24 C 0.002 3.998 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -12.548 -11.216 -8.401 18.811 hybrid contribution 0.623 0.929 0.729 1.335 sum -11.925 -10.287 -7.672 17.519 Atomic orbital electron populations 1.24646 0.95210 1.03195 0.98075 1.21975 0.96050 0.95974 1.01961 1.20816 0.93830 0.95453 1.00863 1.20973 1.00880 0.93881 1.02528 1.22753 0.94310 0.97540 1.01027 1.20825 0.97650 0.98667 0.97233 1.21188 0.80762 0.81965 0.85677 1.90639 1.70031 1.31554 1.54380 1.47879 1.38358 1.14956 1.31663 1.22088 1.03152 0.85957 0.95719 1.21836 0.89242 0.98771 0.86958 0.88253 1.23232 0.95242 0.97790 1.01707 1.21464 0.94720 0.89566 0.89249 1.44704 1.41412 1.15073 1.33195 1.19288 1.28479 0.89643 0.99975 0.90978 1.25531 1.01582 1.00289 0.97430 1.70100 1.42127 1.31788 1.14752 0.85163 0.76831 0.79494 0.78380 1.21260 1.19973 1.21949 1.21691 0.93259 0.88543 0.96306 0.87125 0.86706 0.86993 0.90099 0.90142 0.91663 0.87695 0.86328 0.85646 0.91483 0.88729 0.91638 0.90631 0.89926 0.95068 0.95323 0.94171 0.95086 0.96040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 14.11 66.64 0.94 -1.61 16 2 C -0.14 -2.64 9.83 23.43 0.23 -2.41 16 3 C -0.11 -2.21 5.98 -18.71 -0.11 -2.32 16 4 C -0.13 -1.99 8.55 71.24 0.61 -1.38 16 5 C -0.14 -3.11 8.45 24.51 0.21 -2.91 16 6 C -0.10 -2.23 4.33 29.10 0.13 -2.11 16 7 C 0.51 15.69 7.67 87.66 0.67 16.36 16 8 O -0.59 -22.14 15.40 -3.04 -0.05 -22.19 16 9 N -0.60 -19.00 2.82 -815.98 -2.31 -21.31 16 10 C 0.07 2.11 8.34 127.77 1.07 3.18 16 11 C 0.14 4.98 3.57 46.18 0.16 5.14 16 12 H 0.10 3.67 6.99 -2.39 -0.02 3.66 16 13 C -0.14 -5.17 6.55 32.06 0.21 -4.96 16 14 C 0.17 8.08 4.53 86.93 0.39 8.47 16 15 N -0.62 -30.74 2.98 -691.55 -2.06 -32.80 16 16 C -0.24 -13.45 10.23 84.03 0.86 -12.59 16 17 H 0.07 3.89 7.84 -2.91 -0.02 3.86 16 18 C -0.05 -2.97 5.40 84.86 0.46 -2.52 16 19 N -0.94 -53.65 10.73 21.65 0.23 -53.42 16 20 Si 0.97 44.68 29.56 68.60 2.03 46.70 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 C 0.13 5.43 6.24 86.73 0.54 5.97 16 25 H 0.11 1.39 6.07 -2.91 -0.02 1.37 16 26 H 0.11 1.29 8.06 -2.91 -0.02 1.27 16 27 H 0.11 2.03 8.06 -2.91 -0.02 2.01 16 28 H 0.08 1.08 6.65 -2.38 -0.02 1.06 16 29 H 0.08 1.02 6.22 -2.38 -0.01 1.01 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 2.57 8.05 -2.91 -0.02 2.55 16 32 H 0.12 2.13 5.02 -2.38 -0.01 2.12 16 33 H 0.13 2.08 8.11 -2.39 -0.02 2.06 16 34 H 0.07 1.77 7.99 -2.39 -0.02 1.75 16 35 H 0.09 2.03 6.44 -2.38 -0.02 2.02 16 36 H 0.06 2.50 5.20 -2.38 -0.01 2.48 16 37 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.03 1.49 5.43 -2.39 -0.01 1.48 16 40 H 0.03 1.52 7.02 -2.38 -0.02 1.50 16 41 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.02 0.93 8.04 -2.39 -0.02 0.92 16 Total: -1.00 -66.43 338.68 5.20 -61.22 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.99 Total: 15.47 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 6.37 Total: 6.32 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -4.13 Total: -107.53 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -66.43 5.20 -61.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715023939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.000 kcal (2) G-P(sol) polarization free energy of solvation -66.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds