Wall clock time and date at job start Tue Mar 31 2020 00:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47129 * 119.99818 * 2 1 4 4 C 1.50703 * 119.99911 * 0.02562 * 3 2 1 5 5 C 1.32868 * 119.99818 * 179.97438 * 3 2 1 6 6 C 1.50695 * 119.99843 * 185.89982 * 5 3 2 7 7 C 1.50704 * 109.47087 * 126.02967 * 6 5 3 8 8 O 1.21282 * 120.00046 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00096 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00205 * 359.97438 * 9 7 6 11 11 C 1.46505 * 120.00272 * 180.02562 * 9 7 6 12 12 H 1.09004 * 110.63565 * 358.31292 * 11 9 7 13 13 C 1.55159 * 110.87313 * 235.06636 * 11 9 7 14 14 C 1.55130 * 101.48438 * 205.89717 * 13 11 9 15 15 N 1.47424 * 104.72278 * 37.29230 * 14 13 11 16 16 C 1.36937 * 125.64723 * 155.82206 * 15 14 13 17 17 H 1.07995 * 119.99960 * 197.20845 * 16 15 14 18 18 C 1.38818 * 120.00046 * 17.20061 * 16 15 14 19 19 N 1.31623 * 119.99722 * 27.96401 * 18 16 15 20 20 Si 1.86796 * 119.99822 * 207.96560 * 18 16 15 21 21 H 1.48504 * 109.46894 * 180.02562 * 20 18 16 22 22 H 1.48496 * 109.47146 * 60.00353 * 20 18 16 23 23 H 1.48498 * 109.47334 * 299.99890 * 20 18 16 24 24 C 1.47025 * 108.70366 * 335.55371 * 15 14 13 25 25 H 1.08004 * 119.99913 * 359.97438 * 1 2 3 26 26 H 1.07994 * 119.99938 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00142 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46567 * 213.35454 * 4 3 2 29 29 H 1.09002 * 109.47004 * 333.35263 * 4 3 2 30 30 H 1.09001 * 109.47044 * 93.35412 * 4 3 2 31 31 H 1.07996 * 119.99931 * 5.90219 * 5 3 2 32 32 H 1.09000 * 109.47440 * 6.03080 * 6 5 3 33 33 H 1.08997 * 109.47193 * 246.02897 * 6 5 3 34 34 H 1.08993 * 109.47364 * 270.00044 * 10 9 7 35 35 H 1.08995 * 109.46875 * 29.99998 * 10 9 7 36 36 H 1.08997 * 109.47378 * 149.99932 * 10 9 7 37 37 H 1.08998 * 111.00407 * 324.13464 * 13 11 9 38 38 H 1.08998 * 111.00326 * 87.98499 * 13 11 9 39 39 H 1.09005 * 110.49145 * 278.45430 * 14 13 11 40 40 H 1.08998 * 110.34339 * 156.06243 * 14 13 11 41 41 H 0.96994 * 120.00035 * 5.85329 * 19 18 16 42 42 H 1.08999 * 109.88133 * 120.70605 * 24 15 14 43 43 H 1.09005 * 109.87957 * 241.71434 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2742 0.0000 4 6 1.3107 2.5793 0.0006 5 6 3.3930 1.2742 0.0005 6 6 4.1463 2.5724 0.1347 7 6 5.1209 2.4716 1.2798 8 8 5.1965 1.4464 1.9233 9 7 5.9090 3.5204 1.5882 10 6 5.8189 4.7583 0.8099 11 6 6.8568 3.4223 2.7011 12 1 6.7766 2.4511 3.1895 13 6 6.6326 4.5700 3.7209 14 6 8.0407 4.6948 4.3598 15 7 8.9791 4.4658 3.2461 16 6 10.2716 4.9144 3.1864 17 1 10.7897 4.9439 2.2393 18 6 10.9157 5.3314 4.3432 19 7 10.5701 4.8249 5.5079 20 14 12.2728 6.6113 4.2469 21 1 12.7957 6.8818 5.6103 22 1 11.7298 7.8657 3.6666 23 1 13.3721 6.1035 3.3874 24 6 8.2996 3.6704 2.2130 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.8723 3.3232 -0.5645 29 1 0.3334 2.4347 -0.4600 30 1 1.1815 2.9238 1.0266 31 1 3.9330 0.3439 -0.0952 32 1 3.4429 3.3826 0.3265 33 1 4.6899 2.7741 -0.7883 34 1 6.5166 4.7133 -0.0263 35 1 4.8040 4.8757 0.4303 36 1 6.0692 5.6069 1.4466 37 1 6.3464 5.4919 3.2149 38 1 5.8900 4.2893 4.4678 39 1 8.1775 3.9385 5.1327 40 1 8.1812 5.6927 4.7752 41 1 9.9264 4.1005 5.5499 42 1 8.2832 4.2210 1.2724 43 1 8.8161 2.7202 2.0773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715023943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:32 Heat of formation + Delta-G solvation = 24.782740 kcal Electronic energy + Delta-G solvation = -21599.370467 eV Core-core repulsion = 18453.233969 eV Total energy + Delta-G solvation = -3146.136498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.05075 -37.79057 -36.89035 -34.93841 -32.84154 -32.10802 -29.42310 -28.92239 -27.80157 -26.94213 -26.18439 -24.23707 -21.79354 -20.29659 -20.20731 -18.77686 -18.07591 -17.54721 -17.27062 -16.37319 -15.92760 -15.14944 -14.62636 -14.33003 -14.04116 -13.78337 -13.51613 -13.47399 -13.18821 -12.98817 -12.84628 -12.62309 -12.27650 -12.19870 -11.81904 -11.68643 -11.57299 -11.06441 -11.03816 -10.75030 -10.71630 -10.70118 -10.53475 -10.09019 -10.01922 -9.68644 -9.53783 -8.47452 -8.42617 -8.36535 -6.95201 -6.10507 -3.15842 1.14084 2.69741 2.77794 3.17466 3.49719 3.53118 3.71476 4.45369 4.57491 4.60444 4.66268 4.93500 5.03386 5.07576 5.17708 5.21555 5.23705 5.26682 5.36706 5.39956 5.46645 5.49139 5.60980 5.62132 5.63085 5.76693 5.81196 5.99130 6.11635 6.15874 6.27777 6.34230 6.45966 6.48124 6.61222 6.73785 6.86432 6.92760 7.01571 7.53146 7.78356 8.27198 8.47697 9.01139 9.80494 10.35308 11.22031 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.048970 B = 0.003053 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.643257 B = 9168.571189 C = 9286.651747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 C -0.115 4.115 4 C -0.123 4.123 5 C -0.113 4.113 6 C -0.116 4.116 7 C 0.516 3.484 8 O -0.541 6.541 9 N -0.603 5.603 10 C 0.074 3.926 11 C 0.127 3.873 12 H 0.104 0.896 13 C -0.145 4.145 14 C 0.146 3.854 15 N -0.601 5.601 16 C -0.337 4.337 17 H 0.065 0.935 18 C -0.025 4.025 19 N -0.916 5.916 20 Si 1.066 2.934 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.293 1.293 24 C 0.129 3.871 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.029 0.971 40 H 0.054 0.946 41 H 0.269 0.731 42 H 0.029 0.971 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.748 -2.425 -12.574 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.179 4.179 5 C -0.131 4.131 6 C -0.155 4.155 7 C 0.304 3.696 8 O -0.418 6.418 9 N -0.335 5.335 10 C -0.069 4.069 11 C 0.023 3.977 12 H 0.122 0.878 13 C -0.184 4.184 14 C 0.020 3.980 15 N -0.328 5.328 16 C -0.465 4.465 17 H 0.082 0.918 18 C -0.227 4.227 19 N -0.557 5.557 20 Si 0.895 3.105 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.003 3.997 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.132 0.868 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -17.549 -2.000 -11.338 20.989 hybrid contribution -0.901 -1.001 -1.014 1.686 sum -18.451 -3.001 -12.353 22.406 Atomic orbital electron populations 1.24380 0.95688 1.01942 1.00946 1.21865 0.95293 0.96104 0.99692 1.20534 0.93865 0.94361 1.02775 1.20890 1.00160 0.94561 1.02281 1.22828 0.93868 0.97907 0.98545 1.20845 0.98141 0.98258 0.98279 1.20477 0.81015 0.83060 0.85081 1.90693 1.68801 1.29469 1.52825 1.47853 1.38639 1.13975 1.33083 1.21807 1.01456 0.87271 0.96338 1.22189 0.88547 1.00590 0.86353 0.87795 1.23227 0.99221 0.97876 0.98048 1.21560 0.85728 0.99721 0.90986 1.44521 1.09886 1.60442 1.17995 1.19727 0.88737 1.42566 0.95474 0.91751 1.25785 1.02014 1.02900 0.92038 1.70780 1.33183 1.25563 1.26148 0.83512 0.75255 0.76174 0.75527 1.21059 1.22103 1.22007 1.21554 0.90080 0.94728 0.93381 0.88111 0.88230 0.86816 0.91375 0.91503 0.91408 0.86347 0.88022 0.87910 0.92344 0.91365 0.90182 0.91190 0.91602 0.95337 0.92769 0.91936 0.95288 0.95684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 14.11 28.88 0.41 -1.11 16 2 C -0.11 -1.05 9.83 -37.83 -0.37 -1.42 16 3 C -0.12 -1.15 5.98 -102.87 -0.62 -1.76 16 4 C -0.12 -0.95 8.55 36.01 0.31 -0.65 16 5 C -0.11 -1.25 8.45 -36.16 -0.31 -1.55 16 6 C -0.12 -1.19 4.31 -29.04 -0.13 -1.32 16 7 C 0.52 7.69 7.67 -10.99 -0.08 7.60 16 8 O -0.54 -10.25 15.40 5.56 0.09 -10.17 16 9 N -0.60 -8.97 2.89 -171.84 -0.50 -9.47 16 10 C 0.07 0.83 9.13 59.85 0.55 1.38 16 11 C 0.13 2.34 3.35 -66.10 -0.22 2.12 16 12 H 0.10 2.12 6.99 -51.93 -0.36 1.75 16 13 C -0.14 -2.64 6.63 -24.46 -0.16 -2.80 16 14 C 0.15 3.42 5.32 -2.41 -0.01 3.40 16 15 N -0.60 -15.43 3.29 -169.93 -0.56 -15.99 16 16 C -0.34 -9.61 10.02 -15.06 -0.15 -9.76 16 17 H 0.06 1.83 7.97 -52.49 -0.42 1.41 16 18 C -0.03 -0.73 5.09 -17.43 -0.09 -0.82 16 19 N -0.92 -27.94 12.95 55.49 0.72 -27.23 16 20 Si 1.07 25.38 30.00 -169.99 -5.10 20.28 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 24 C 0.13 2.80 6.88 -3.07 -0.02 2.77 16 25 H 0.10 0.71 6.09 -52.48 -0.32 0.39 16 26 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 27 H 0.11 1.02 8.06 -52.49 -0.42 0.59 16 28 H 0.07 0.45 6.61 -51.93 -0.34 0.10 16 29 H 0.07 0.44 6.27 -51.93 -0.33 0.12 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.12 1.40 8.05 -52.49 -0.42 0.97 16 32 H 0.10 0.85 5.03 -51.93 -0.26 0.59 16 33 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 34 H 0.06 0.63 7.89 -51.93 -0.41 0.22 16 35 H 0.07 0.54 6.44 -51.93 -0.33 0.20 16 36 H 0.08 0.97 6.10 -51.93 -0.32 0.65 16 37 H 0.07 1.17 6.12 -51.93 -0.32 0.86 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.03 0.72 6.80 -51.93 -0.35 0.37 16 40 H 0.05 1.36 7.97 -51.93 -0.41 0.95 16 41 H 0.27 8.26 6.06 -40.82 -0.25 8.01 16 42 H 0.03 0.60 6.94 -51.93 -0.36 0.24 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 341.13 15.07 5.14 5.14 Total: -1.00 -33.71 341.13 -7.64 -41.36 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.54 Total: -0.01 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.90 Total: -3.92 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.34 Total: -52.68 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.10 Total: 20.28 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.71 -7.64 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715023943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.141 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds