Wall clock time and date at job start Tue Mar 31 2020 00:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32868 * 1 3 3 C 1.47129 * 119.99818 * 2 1 4 4 C 1.50703 * 119.99911 * 0.02562 * 3 2 1 5 5 C 1.32868 * 119.99818 * 179.97438 * 3 2 1 6 6 C 1.50695 * 119.99843 * 185.89982 * 5 3 2 7 7 C 1.50704 * 109.47087 * 126.02967 * 6 5 3 8 8 O 1.21282 * 120.00046 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00096 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00205 * 359.97438 * 9 7 6 11 11 C 1.46505 * 120.00272 * 180.02562 * 9 7 6 12 12 H 1.09004 * 110.63565 * 358.31292 * 11 9 7 13 13 C 1.55159 * 110.87313 * 235.06636 * 11 9 7 14 14 C 1.55130 * 101.48438 * 205.89717 * 13 11 9 15 15 N 1.47424 * 104.72278 * 37.29230 * 14 13 11 16 16 C 1.36937 * 125.64723 * 155.82206 * 15 14 13 17 17 H 1.07995 * 119.99960 * 197.20845 * 16 15 14 18 18 C 1.38818 * 120.00046 * 17.20061 * 16 15 14 19 19 N 1.31623 * 119.99722 * 27.96401 * 18 16 15 20 20 Si 1.86796 * 119.99822 * 207.96560 * 18 16 15 21 21 H 1.48504 * 109.46894 * 180.02562 * 20 18 16 22 22 H 1.48496 * 109.47146 * 60.00353 * 20 18 16 23 23 H 1.48498 * 109.47334 * 299.99890 * 20 18 16 24 24 C 1.47025 * 108.70366 * 335.55371 * 15 14 13 25 25 H 1.08004 * 119.99913 * 359.97438 * 1 2 3 26 26 H 1.07994 * 119.99938 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00142 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46567 * 213.35454 * 4 3 2 29 29 H 1.09002 * 109.47004 * 333.35263 * 4 3 2 30 30 H 1.09001 * 109.47044 * 93.35412 * 4 3 2 31 31 H 1.07996 * 119.99931 * 5.90219 * 5 3 2 32 32 H 1.09000 * 109.47440 * 6.03080 * 6 5 3 33 33 H 1.08997 * 109.47193 * 246.02897 * 6 5 3 34 34 H 1.08993 * 109.47364 * 270.00044 * 10 9 7 35 35 H 1.08995 * 109.46875 * 29.99998 * 10 9 7 36 36 H 1.08997 * 109.47378 * 149.99932 * 10 9 7 37 37 H 1.08998 * 111.00407 * 324.13464 * 13 11 9 38 38 H 1.08998 * 111.00326 * 87.98499 * 13 11 9 39 39 H 1.09005 * 110.49145 * 278.45430 * 14 13 11 40 40 H 1.08998 * 110.34339 * 156.06243 * 14 13 11 41 41 H 0.96994 * 120.00035 * 5.85329 * 19 18 16 42 42 H 1.08999 * 109.88133 * 120.70605 * 24 15 14 43 43 H 1.09005 * 109.87957 * 241.71434 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2742 0.0000 4 6 1.3107 2.5793 0.0006 5 6 3.3930 1.2742 0.0005 6 6 4.1463 2.5724 0.1347 7 6 5.1209 2.4716 1.2798 8 8 5.1965 1.4464 1.9233 9 7 5.9090 3.5204 1.5882 10 6 5.8189 4.7583 0.8099 11 6 6.8568 3.4223 2.7011 12 1 6.7766 2.4511 3.1895 13 6 6.6326 4.5700 3.7209 14 6 8.0407 4.6948 4.3598 15 7 8.9791 4.4658 3.2461 16 6 10.2716 4.9144 3.1864 17 1 10.7897 4.9439 2.2393 18 6 10.9157 5.3314 4.3432 19 7 10.5701 4.8249 5.5079 20 14 12.2728 6.6113 4.2469 21 1 12.7957 6.8818 5.6103 22 1 11.7298 7.8657 3.6666 23 1 13.3721 6.1035 3.3874 24 6 8.2996 3.6704 2.2130 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8687 -0.9353 0.0004 28 1 1.8723 3.3232 -0.5645 29 1 0.3334 2.4347 -0.4600 30 1 1.1815 2.9238 1.0266 31 1 3.9330 0.3439 -0.0952 32 1 3.4429 3.3826 0.3265 33 1 4.6899 2.7741 -0.7883 34 1 6.5166 4.7133 -0.0263 35 1 4.8040 4.8757 0.4303 36 1 6.0692 5.6069 1.4466 37 1 6.3464 5.4919 3.2149 38 1 5.8900 4.2893 4.4678 39 1 8.1775 3.9385 5.1327 40 1 8.1812 5.6927 4.7752 41 1 9.9264 4.1005 5.5499 42 1 8.2832 4.2210 1.2724 43 1 8.8161 2.7202 2.0773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715023943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:31 Heat of formation + Delta-G solvation = 4.273146 kcal Electronic energy + Delta-G solvation = -21600.259830 eV Core-core repulsion = 18453.233969 eV Total energy + Delta-G solvation = -3147.025861 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29201 -39.29776 -37.77021 -36.41221 -34.33808 -33.31218 -31.13016 -30.05228 -29.08032 -27.82796 -27.32483 -26.17903 -22.87743 -22.21798 -21.35433 -19.97902 -19.62214 -18.86123 -18.33589 -17.44025 -17.06018 -16.34068 -16.05119 -15.92103 -15.53569 -15.15583 -14.98955 -14.48592 -14.40174 -14.15778 -13.93460 -13.74053 -13.48407 -13.27606 -13.06394 -12.65325 -12.62478 -12.53488 -12.48389 -12.43693 -12.27387 -11.89678 -11.72860 -11.72257 -11.60969 -11.39047 -10.91132 -10.55712 -9.70547 -9.12426 -9.08571 -8.36853 -5.39742 0.42002 1.56256 1.58003 1.65750 1.84455 1.86620 2.20660 2.63954 3.15193 3.45565 3.58898 3.69822 3.77462 3.84011 3.99974 4.09055 4.18306 4.29524 4.33580 4.38775 4.42892 4.47549 4.57842 4.66012 4.73670 4.79291 4.85752 4.89800 4.94466 4.97556 4.99559 5.01069 5.14012 5.19103 5.45764 5.48901 5.59115 5.63247 5.78591 6.04113 6.26039 6.39419 6.83125 7.12444 7.64986 8.22287 8.94572 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.048970 B = 0.003053 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.643257 B = 9168.571189 C = 9286.651747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.146 4.146 3 C -0.106 4.106 4 C -0.125 4.125 5 C -0.145 4.145 6 C -0.099 4.099 7 C 0.510 3.490 8 O -0.590 6.590 9 N -0.602 5.602 10 C 0.067 3.933 11 C 0.141 3.859 12 H 0.079 0.921 13 C -0.122 4.122 14 C 0.148 3.852 15 N -0.621 5.621 16 C -0.349 4.349 17 H 0.062 0.938 18 C -0.079 4.079 19 N -0.945 5.945 20 Si 1.121 2.879 21 H -0.292 1.292 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.130 3.870 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.001 0.999 40 H 0.031 0.969 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.965 -0.566 -14.681 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.106 4.106 4 C -0.182 4.182 5 C -0.164 4.164 6 C -0.138 4.138 7 C 0.301 3.699 8 O -0.471 6.471 9 N -0.333 5.333 10 C -0.074 4.074 11 C 0.036 3.964 12 H 0.097 0.903 13 C -0.161 4.161 14 C 0.022 3.978 15 N -0.348 5.348 16 C -0.477 4.477 17 H 0.080 0.920 18 C -0.274 4.274 19 N -0.587 5.587 20 Si 0.944 3.056 21 H -0.218 1.218 22 H -0.201 1.201 23 H -0.201 1.201 24 C 0.004 3.996 25 H 0.133 0.867 26 H 0.131 0.869 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.019 0.981 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -19.802 -0.133 -13.502 23.967 hybrid contribution -0.320 -1.701 -0.407 1.778 sum -20.121 -1.834 -13.909 24.529 Atomic orbital electron populations 1.24652 0.95106 1.03286 0.97752 1.21993 0.96151 0.96081 1.02225 1.20843 0.93703 0.95600 1.00429 1.20989 1.00824 0.93537 1.02802 1.22751 0.94453 0.97666 1.01519 1.20828 0.97368 0.98699 0.96906 1.21399 0.81041 0.81962 0.85529 1.90675 1.70263 1.31425 1.54724 1.47893 1.37534 1.15599 1.32308 1.22119 1.04499 0.84953 0.95865 1.21690 0.87710 0.99379 0.87667 0.90310 1.23072 0.96098 0.98881 0.98065 1.21464 0.88555 0.97408 0.90327 1.44795 1.09721 1.61135 1.19194 1.20029 0.90100 1.42214 0.95387 0.92024 1.27309 1.04266 1.04310 0.91548 1.70906 1.34278 1.26309 1.27214 0.82799 0.73069 0.74270 0.75471 1.21790 1.20067 1.20085 1.21623 0.91595 0.93183 0.93174 0.86740 0.86915 0.87543 0.89557 0.90192 0.91263 0.88560 0.85137 0.85411 0.91578 0.87001 0.90767 0.88757 0.89745 0.98077 0.95019 0.93609 0.93598 0.98091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 14.11 66.64 0.94 -1.35 16 2 C -0.15 -2.60 9.83 23.43 0.23 -2.37 16 3 C -0.11 -1.91 5.98 -18.70 -0.11 -2.02 16 4 C -0.13 -1.50 8.55 71.24 0.61 -0.89 16 5 C -0.15 -3.07 8.45 24.51 0.21 -2.86 16 6 C -0.10 -1.76 4.31 29.10 0.13 -1.63 16 7 C 0.51 14.56 7.67 87.66 0.67 15.23 16 8 O -0.59 -22.82 15.40 -3.04 -0.05 -22.87 16 9 N -0.60 -16.79 2.89 -815.97 -2.35 -19.14 16 10 C 0.07 1.25 9.13 127.77 1.17 2.42 16 11 C 0.14 5.19 3.35 46.18 0.15 5.35 16 12 H 0.08 3.33 6.99 -2.38 -0.02 3.31 16 13 C -0.12 -4.36 6.63 32.06 0.21 -4.15 16 14 C 0.15 7.15 5.32 86.93 0.46 7.61 16 15 N -0.62 -32.61 3.29 -691.54 -2.27 -34.89 16 16 C -0.35 -20.21 10.02 84.03 0.84 -19.37 16 17 H 0.06 3.53 7.97 -2.91 -0.02 3.50 16 18 C -0.08 -4.59 5.09 84.86 0.43 -4.16 16 19 N -0.94 -59.46 12.95 21.65 0.28 -59.18 16 20 Si 1.12 51.32 30.00 68.60 2.06 53.38 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 24 C 0.13 5.72 6.88 86.73 0.60 6.31 16 25 H 0.11 1.20 6.09 -2.91 -0.02 1.19 16 26 H 0.11 1.19 8.06 -2.91 -0.02 1.16 16 27 H 0.11 1.95 8.06 -2.91 -0.02 1.93 16 28 H 0.09 0.72 6.61 -2.39 -0.02 0.71 16 29 H 0.08 0.75 6.27 -2.39 -0.01 0.73 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 2.39 8.05 -2.91 -0.02 2.36 16 32 H 0.13 1.55 5.03 -2.39 -0.01 1.54 16 33 H 0.13 1.64 8.11 -2.39 -0.02 1.62 16 34 H 0.07 1.17 7.89 -2.39 -0.02 1.15 16 35 H 0.11 1.14 6.44 -2.39 -0.02 1.12 16 36 H 0.07 1.52 6.10 -2.39 -0.01 1.50 16 37 H 0.09 2.93 6.12 -2.39 -0.01 2.92 16 38 H 0.08 2.72 8.14 -2.39 -0.02 2.71 16 39 H 0.00 0.08 6.80 -2.38 -0.02 0.06 16 40 H 0.03 1.64 7.97 -2.39 -0.02 1.62 16 41 H 0.25 16.35 6.06 -92.71 -0.56 15.79 16 42 H 0.05 1.86 6.94 -2.39 -0.02 1.85 16 43 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 Total: -1.00 -77.19 341.13 5.40 -71.79 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 1.20 Total: 12.79 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 6.54 Total: -1.88 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -4.35 Total: -113.21 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.06 Total: 53.38 kcal Total: -77.19 5.40 -71.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715023943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.059 kcal (2) G-P(sol) polarization free energy of solvation -77.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds