Wall clock time and date at job start Tue Mar 31 2020 00:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32997 * 119.99592 * 2 1 4 4 C 1.47094 * 120.00456 * 353.10012 * 3 2 1 5 5 O 1.21614 * 120.00042 * 353.77404 * 4 3 2 6 6 N 1.34775 * 120.00261 * 173.77230 * 4 3 2 7 7 C 1.46506 * 119.99966 * 180.02562 * 6 4 3 8 8 C 1.52995 * 110.88452 * 297.57109 * 7 6 4 9 9 C 1.55156 * 111.03532 * 173.66917 * 7 6 4 10 10 C 1.54337 * 103.02072 * 277.21841 * 9 7 6 11 11 N 1.47027 * 107.26310 * 338.13823 * 10 9 7 12 12 C 1.36933 * 125.64581 * 178.85067 * 11 10 9 13 13 H 1.07998 * 119.99862 * 179.70032 * 12 11 10 14 14 C 1.38810 * 120.00168 * 359.69367 * 12 11 10 15 15 N 1.31620 * 120.00194 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99829 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46751 * 180.02562 * 16 14 12 18 18 H 1.48499 * 109.46986 * 299.99681 * 16 14 12 19 19 H 1.48493 * 109.47261 * 60.00018 * 16 14 12 20 20 C 1.47418 * 108.70201 * 358.58819 * 11 10 9 21 21 C 1.50696 * 120.00210 * 179.97438 * 2 1 3 22 22 C 1.53001 * 117.49793 * 8.74938 * 21 2 1 23 23 C 1.52997 * 117.49801 * 300.08714 * 21 2 1 24 24 H 1.08995 * 109.47080 * 84.53509 * 1 2 3 25 25 H 1.08994 * 109.47080 * 204.53571 * 1 2 3 26 26 H 1.08996 * 109.47365 * 324.53703 * 1 2 3 27 27 H 1.08007 * 119.99591 * 173.10641 * 3 2 1 28 28 H 0.96993 * 120.00150 * 359.97438 * 6 4 3 29 29 H 1.09003 * 109.47200 * 182.42969 * 8 7 6 30 30 H 1.08997 * 109.47406 * 302.42522 * 8 7 6 31 31 H 1.08996 * 109.47144 * 62.43050 * 8 7 6 32 32 H 1.08997 * 110.72078 * 35.77359 * 9 7 6 33 33 H 1.08997 * 110.72227 * 158.87006 * 9 7 6 34 34 H 1.08998 * 109.99152 * 218.66699 * 10 9 7 35 35 H 1.08993 * 109.78159 * 97.49616 * 10 9 7 36 36 H 0.96996 * 119.99921 * 179.97438 * 15 14 12 37 37 H 1.09009 * 110.36660 * 143.19021 * 20 11 10 38 38 H 1.08993 * 110.37001 * 265.40608 * 20 11 10 39 39 H 1.09003 * 115.55072 * 154.41906 * 21 2 1 40 40 H 1.08994 * 117.49689 * 359.97438 * 22 21 2 41 41 H 1.08999 * 117.49797 * 145.01973 * 22 21 2 42 42 H 1.09003 * 117.50072 * 214.97236 * 23 21 2 43 43 H 1.08997 * 117.49939 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4444 2.4211 -0.1530 5 8 0.2521 2.4136 -0.3926 6 7 2.0991 3.5925 -0.0277 7 6 1.3744 4.8566 -0.1796 8 6 0.7937 4.9865 -1.5891 9 6 2.2859 6.0654 0.1599 10 6 2.2022 6.1426 1.6990 11 7 0.9654 5.4583 2.1036 12 6 0.5329 5.2868 3.3915 13 1 -0.3964 4.7717 3.5849 14 6 1.2890 5.7748 4.4483 15 7 2.4219 6.4020 4.2126 16 14 0.6993 5.5402 6.2052 17 1 1.6785 6.1485 7.1414 18 1 -0.6217 6.1969 6.3758 19 1 0.5720 4.0894 6.4951 20 6 0.2649 4.9929 0.8928 21 6 2.2605 -1.3050 0.0006 22 6 1.4521 -2.5876 -0.2053 23 6 2.0246 -2.2565 1.1753 24 1 -0.3633 0.0979 -1.0229 25 1 -0.3633 -0.9348 0.4267 26 1 -0.3634 0.8370 0.5962 27 1 3.2461 1.1552 0.1123 28 1 3.0500 3.5986 0.1637 29 1 0.2975 5.9517 -1.6902 30 1 1.5976 4.9128 -2.3215 31 1 0.0723 4.1875 -1.7599 32 1 3.3099 5.8793 -0.1641 33 1 1.8998 6.9787 -0.2927 34 1 2.1711 7.1842 2.0188 35 1 3.0641 5.6426 2.1409 36 1 2.9500 6.7434 4.9512 37 1 -0.2071 4.0274 1.0751 38 1 -0.4793 5.7252 0.5800 39 1 3.2638 -1.2688 -0.4241 40 1 0.3753 -2.4875 -0.3407 41 1 1.9237 -3.3953 -0.7650 42 1 2.8724 -2.8466 1.5232 43 1 1.3246 -1.9383 1.9479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716834345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:31 Heat of formation + Delta-G solvation = 31.425289 kcal Electronic energy + Delta-G solvation = -22367.562840 eV Core-core repulsion = 19221.714385 eV Total energy + Delta-G solvation = -3145.848455 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.86916 -38.27074 -37.07532 -33.92198 -32.97511 -31.81681 -29.98946 -28.62460 -27.46729 -25.61109 -24.27191 -23.42806 -22.52828 -20.88859 -20.11468 -18.92720 -18.38348 -16.92010 -16.48281 -16.06819 -15.24735 -14.76212 -14.57222 -14.47949 -13.78196 -13.62441 -13.23389 -12.97914 -12.71909 -12.64236 -11.97944 -11.94516 -11.83405 -11.72394 -11.60712 -11.53438 -11.30348 -10.97595 -10.84943 -10.82327 -10.58758 -10.29264 -10.26396 -10.06104 -9.90049 -9.60082 -8.96126 -8.84274 -8.56260 -8.34448 -6.74107 -5.65727 -2.97185 1.52517 3.44183 3.48039 3.49499 3.57003 3.65139 3.88844 4.51747 4.55525 4.70400 4.78941 4.94844 5.10002 5.20677 5.42408 5.43779 5.47073 5.55212 5.64928 5.68281 5.74078 5.78971 5.88725 5.92880 6.00661 6.07284 6.19682 6.20463 6.26051 6.41533 6.45677 6.59695 6.64257 6.70350 6.77043 6.91510 7.26193 7.59707 7.62442 7.84947 8.08598 8.31859 8.76605 9.28934 9.89260 10.55825 11.46367 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.005311 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.786424 B = 5271.268189 C = 6486.701052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.011 4.011 3 C -0.218 4.218 4 C 0.549 3.451 5 O -0.542 6.542 6 N -0.699 5.699 7 C 0.157 3.843 8 C -0.147 4.147 9 C -0.147 4.147 10 C 0.178 3.822 11 N -0.603 5.603 12 C -0.220 4.220 13 H 0.075 0.925 14 C -0.010 4.010 15 N -0.925 5.925 16 Si 0.910 3.090 17 H -0.291 1.291 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.132 3.868 21 C -0.130 4.130 22 C -0.174 4.174 23 C -0.168 4.168 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.397 0.603 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.251 0.749 37 H 0.056 0.944 38 H 0.023 0.977 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.035 -12.386 -11.403 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.013 4.013 3 C -0.239 4.239 4 C 0.338 3.662 5 O -0.423 6.423 6 N -0.348 5.348 7 C 0.070 3.930 8 C -0.206 4.206 9 C -0.186 4.186 10 C 0.054 3.946 11 N -0.329 5.329 12 C -0.349 4.349 13 H 0.093 0.907 14 C -0.206 4.206 15 N -0.574 5.574 16 Si 0.741 3.259 17 H -0.216 1.216 18 H -0.212 1.212 19 H -0.213 1.213 20 C 0.005 3.995 21 C -0.148 4.148 22 C -0.210 4.210 23 C -0.205 4.205 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.140 0.860 28 H 0.231 0.769 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.132 0.868 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.270 -12.294 -11.338 16.772 hybrid contribution 0.499 0.010 1.166 1.269 sum 1.768 -12.283 -10.172 16.046 Atomic orbital electron populations 1.21138 0.90800 1.02375 1.03471 1.21684 0.96127 0.92108 0.91351 1.22345 1.00187 0.92236 1.09139 1.18322 0.86913 0.83991 0.76955 1.90688 1.14823 1.87572 1.49169 1.45700 1.12275 1.05094 1.71708 1.21437 0.93821 0.82897 0.94807 1.21977 1.01047 1.02472 0.95118 1.23223 0.98183 0.96306 1.00855 1.21136 0.89852 0.97416 0.86234 1.44432 1.22178 1.65601 1.00706 1.19011 1.04088 1.30641 0.81125 0.90718 1.24748 0.97180 1.00857 0.97766 1.69939 1.14423 1.43196 1.29809 0.86221 0.77579 0.77611 0.84518 1.21646 1.21233 1.21315 1.21877 0.92852 0.98065 0.86694 1.21258 0.99966 0.88901 1.04644 1.23063 1.00493 0.97730 0.99763 1.22997 1.03695 1.02035 0.91752 0.90516 0.93097 0.88721 0.86027 0.76947 0.92047 0.93271 0.91043 0.91868 0.91048 0.93984 0.93670 0.93881 0.92598 0.95960 0.86847 0.88039 0.88502 0.88360 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 7.91 36.01 0.28 -1.38 16 2 C -0.01 -0.14 5.81 -101.17 -0.59 -0.73 16 3 C -0.22 -3.11 9.67 -37.81 -0.37 -3.48 16 4 C 0.55 9.47 7.00 -12.67 -0.09 9.39 16 5 O -0.54 -10.46 10.08 5.26 0.05 -10.40 16 6 N -0.70 -11.90 5.17 -46.79 -0.24 -12.14 16 7 C 0.16 2.87 0.82 -129.67 -0.11 2.76 16 8 C -0.15 -2.33 8.58 37.16 0.32 -2.01 16 9 C -0.15 -2.68 5.99 -24.89 -0.15 -2.83 16 10 C 0.18 4.31 5.37 -3.05 -0.02 4.29 16 11 N -0.60 -15.81 3.39 -170.07 -0.58 -16.39 16 12 C -0.22 -6.35 10.28 -15.06 -0.15 -6.50 16 13 H 0.07 2.12 7.83 -52.49 -0.41 1.71 16 14 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 15 N -0.93 -27.38 10.31 55.49 0.57 -26.80 16 16 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 C 0.13 2.97 6.10 -2.53 -0.02 2.96 16 21 C -0.13 -1.33 6.00 -91.77 -0.55 -1.88 16 22 C -0.17 -1.50 9.77 -26.69 -0.26 -1.76 16 23 C -0.17 -1.56 10.10 -26.69 -0.27 -1.83 16 24 H 0.08 1.04 8.05 -51.93 -0.42 0.63 16 25 H 0.05 0.58 6.31 -51.93 -0.33 0.26 16 26 H 0.09 1.59 6.12 -51.93 -0.32 1.27 16 27 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 28 H 0.40 6.05 8.47 -40.82 -0.35 5.70 16 29 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.22 6.53 -51.93 -0.34 0.88 16 32 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 33 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 34 H 0.04 1.13 7.52 -51.93 -0.39 0.74 16 35 H 0.05 1.19 7.37 -51.93 -0.38 0.81 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.06 1.35 6.31 -51.92 -0.33 1.03 16 38 H 0.02 0.51 8.04 -51.93 -0.42 0.09 16 39 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.10 0.88 6.42 -51.93 -0.33 0.55 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -31.87 338.94 -9.10 -40.98 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.94 Total: 5.40 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.06 Total: -3.39 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.25 Total: -55.33 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.05 Total: -10.40 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.87 -9.10 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716834345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.402 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds