Wall clock time and date at job start Tue Mar 31 2020 00:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32997 * 119.99592 * 2 1 4 4 C 1.47094 * 120.00456 * 353.10012 * 3 2 1 5 5 O 1.21614 * 120.00042 * 353.77404 * 4 3 2 6 6 N 1.34775 * 120.00261 * 173.77230 * 4 3 2 7 7 C 1.46506 * 119.99966 * 180.02562 * 6 4 3 8 8 C 1.52995 * 110.88452 * 297.57109 * 7 6 4 9 9 C 1.55156 * 111.03532 * 173.66917 * 7 6 4 10 10 C 1.54337 * 103.02072 * 277.21841 * 9 7 6 11 11 N 1.47027 * 107.26310 * 338.13823 * 10 9 7 12 12 C 1.36933 * 125.64581 * 178.85067 * 11 10 9 13 13 H 1.07998 * 119.99862 * 179.70032 * 12 11 10 14 14 C 1.38810 * 120.00168 * 359.69367 * 12 11 10 15 15 N 1.31620 * 120.00194 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99829 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46751 * 180.02562 * 16 14 12 18 18 H 1.48499 * 109.46986 * 299.99681 * 16 14 12 19 19 H 1.48493 * 109.47261 * 60.00018 * 16 14 12 20 20 C 1.47418 * 108.70201 * 358.58819 * 11 10 9 21 21 C 1.50696 * 120.00210 * 179.97438 * 2 1 3 22 22 C 1.53001 * 117.49793 * 8.74938 * 21 2 1 23 23 C 1.52997 * 117.49801 * 300.08714 * 21 2 1 24 24 H 1.08995 * 109.47080 * 84.53509 * 1 2 3 25 25 H 1.08994 * 109.47080 * 204.53571 * 1 2 3 26 26 H 1.08996 * 109.47365 * 324.53703 * 1 2 3 27 27 H 1.08007 * 119.99591 * 173.10641 * 3 2 1 28 28 H 0.96993 * 120.00150 * 359.97438 * 6 4 3 29 29 H 1.09003 * 109.47200 * 182.42969 * 8 7 6 30 30 H 1.08997 * 109.47406 * 302.42522 * 8 7 6 31 31 H 1.08996 * 109.47144 * 62.43050 * 8 7 6 32 32 H 1.08997 * 110.72078 * 35.77359 * 9 7 6 33 33 H 1.08997 * 110.72227 * 158.87006 * 9 7 6 34 34 H 1.08998 * 109.99152 * 218.66699 * 10 9 7 35 35 H 1.08993 * 109.78159 * 97.49616 * 10 9 7 36 36 H 0.96996 * 119.99921 * 179.97438 * 15 14 12 37 37 H 1.09009 * 110.36660 * 143.19021 * 20 11 10 38 38 H 1.08993 * 110.37001 * 265.40608 * 20 11 10 39 39 H 1.09003 * 115.55072 * 154.41906 * 21 2 1 40 40 H 1.08994 * 117.49689 * 359.97438 * 22 21 2 41 41 H 1.08999 * 117.49797 * 145.01973 * 22 21 2 42 42 H 1.09003 * 117.50072 * 214.97236 * 23 21 2 43 43 H 1.08997 * 117.49939 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4444 2.4211 -0.1530 5 8 0.2521 2.4136 -0.3926 6 7 2.0991 3.5925 -0.0277 7 6 1.3744 4.8566 -0.1796 8 6 0.7937 4.9865 -1.5891 9 6 2.2859 6.0654 0.1599 10 6 2.2022 6.1426 1.6990 11 7 0.9654 5.4583 2.1036 12 6 0.5329 5.2868 3.3915 13 1 -0.3964 4.7717 3.5849 14 6 1.2890 5.7748 4.4483 15 7 2.4219 6.4020 4.2126 16 14 0.6993 5.5402 6.2052 17 1 1.6785 6.1485 7.1414 18 1 -0.6217 6.1969 6.3758 19 1 0.5720 4.0894 6.4951 20 6 0.2649 4.9929 0.8928 21 6 2.2605 -1.3050 0.0006 22 6 1.4521 -2.5876 -0.2053 23 6 2.0246 -2.2565 1.1753 24 1 -0.3633 0.0979 -1.0229 25 1 -0.3633 -0.9348 0.4267 26 1 -0.3634 0.8370 0.5962 27 1 3.2461 1.1552 0.1123 28 1 3.0500 3.5986 0.1637 29 1 0.2975 5.9517 -1.6902 30 1 1.5976 4.9128 -2.3215 31 1 0.0723 4.1875 -1.7599 32 1 3.3099 5.8793 -0.1641 33 1 1.8998 6.9787 -0.2927 34 1 2.1711 7.1842 2.0188 35 1 3.0641 5.6426 2.1409 36 1 2.9500 6.7434 4.9512 37 1 -0.2071 4.0274 1.0751 38 1 -0.4793 5.7252 0.5800 39 1 3.2638 -1.2688 -0.4241 40 1 0.3753 -2.4875 -0.3407 41 1 1.9237 -3.3953 -0.7650 42 1 2.8724 -2.8466 1.5232 43 1 1.3246 -1.9383 1.9479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716834345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:29 Heat of formation + Delta-G solvation = 11.945312 kcal Electronic energy + Delta-G solvation = -22368.407555 eV Core-core repulsion = 19221.714385 eV Total energy + Delta-G solvation = -3146.693170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.25499 -39.42120 -38.40616 -35.68694 -34.05482 -33.59924 -31.71237 -30.34838 -28.60214 -27.51292 -25.61708 -24.92794 -23.21463 -22.37710 -21.76369 -20.40462 -19.51424 -18.79978 -17.75767 -17.22305 -16.80605 -16.47564 -16.06125 -15.68127 -15.45205 -15.23261 -14.52196 -14.26290 -13.94216 -13.88600 -13.82746 -13.52481 -13.35562 -13.02903 -12.87992 -12.78618 -12.73928 -12.44684 -12.22571 -12.09894 -12.02622 -11.95746 -11.81446 -11.67939 -11.50162 -11.31088 -10.71274 -10.31383 -10.01744 -9.66221 -8.86437 -7.86194 -5.19972 0.42078 1.42189 1.45223 1.51747 2.30441 2.46705 2.47867 3.03243 3.31696 3.55239 3.65264 3.74449 3.90879 3.97468 4.07236 4.13256 4.20432 4.21996 4.34881 4.64297 4.67964 4.70698 4.77232 4.82956 4.86403 4.88652 4.93917 4.99907 5.03703 5.07591 5.15921 5.16815 5.26385 5.37086 5.41331 5.56688 5.60290 5.65593 5.73529 5.82746 6.19521 6.77687 7.11079 7.44961 7.77214 8.41896 9.23554 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.005311 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.786424 B = 5271.268189 C = 6486.701052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.001 4.001 3 C -0.238 4.238 4 C 0.540 3.460 5 O -0.569 6.569 6 N -0.700 5.700 7 C 0.167 3.833 8 C -0.137 4.137 9 C -0.129 4.129 10 C 0.186 3.814 11 N -0.621 5.621 12 C -0.244 4.244 13 H 0.067 0.933 14 C -0.059 4.059 15 N -0.946 5.946 16 Si 0.974 3.026 17 H -0.288 1.288 18 H -0.279 1.279 19 H -0.281 1.281 20 C 0.129 3.871 21 C -0.143 4.143 22 C -0.161 4.161 23 C -0.168 4.168 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.145 0.855 28 H 0.406 0.594 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.007 0.993 35 H 0.017 0.983 36 H 0.248 0.752 37 H 0.032 0.968 38 H 0.021 0.979 39 H 0.130 0.870 40 H 0.099 0.901 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.952 -13.869 -12.457 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.003 4.003 3 C -0.259 4.259 4 C 0.331 3.669 5 O -0.452 6.452 6 N -0.349 5.349 7 C 0.080 3.920 8 C -0.195 4.195 9 C -0.167 4.167 10 C 0.062 3.938 11 N -0.347 5.347 12 C -0.373 4.373 13 H 0.085 0.915 14 C -0.252 4.252 15 N -0.595 5.595 16 Si 0.802 3.198 17 H -0.214 1.214 18 H -0.206 1.206 19 H -0.207 1.207 20 C 0.003 3.997 21 C -0.161 4.161 22 C -0.198 4.198 23 C -0.205 4.205 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.163 0.837 28 H 0.241 0.759 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.025 0.975 35 H 0.035 0.965 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.039 0.961 39 H 0.148 0.852 40 H 0.117 0.883 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.190 -13.785 -12.416 18.681 hybrid contribution 0.128 0.420 1.517 1.580 sum 2.318 -13.365 -10.898 17.400 Atomic orbital electron populations 1.21038 0.91692 1.01901 1.02823 1.21964 0.95805 0.93399 0.89107 1.22390 1.01231 0.91049 1.11242 1.18879 0.86813 0.84943 0.76287 1.90679 1.16073 1.88036 1.50400 1.45707 1.12697 1.04738 1.71794 1.21308 0.92317 0.83573 0.94799 1.21888 1.01470 1.02581 0.93608 1.23096 1.00366 0.97172 0.96097 1.20925 0.88040 0.94596 0.90286 1.44689 1.23139 1.65940 1.00970 1.19282 1.04191 1.30857 0.82937 0.91496 1.25526 0.97440 1.00753 1.01474 1.70144 1.15167 1.43655 1.30514 0.85225 0.77216 0.77619 0.79710 1.21353 1.20559 1.20744 1.21979 0.94215 0.96454 0.87058 1.21326 1.00758 0.87837 1.06156 1.23174 1.00383 0.97018 0.99219 1.23074 1.04188 1.01607 0.91622 0.90642 0.91033 0.92257 0.83745 0.75892 0.90828 0.90672 0.92546 0.88562 0.89172 0.97463 0.96503 0.94303 0.94982 0.96126 0.85189 0.88256 0.86284 0.86552 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.23 7.91 71.24 0.56 -2.67 16 2 C 0.00 -0.02 5.81 -17.62 -0.10 -0.12 16 3 C -0.24 -6.62 9.67 23.43 0.23 -6.39 16 4 C 0.54 18.66 7.00 86.57 0.61 19.27 16 5 O -0.57 -22.52 10.08 -4.08 -0.04 -22.57 16 6 N -0.70 -23.38 5.17 -420.20 -2.17 -25.55 16 7 C 0.17 5.96 0.82 4.99 0.00 5.97 16 8 C -0.14 -4.05 8.58 71.98 0.62 -3.44 16 9 C -0.13 -4.51 5.99 31.79 0.19 -4.32 16 10 C 0.19 9.16 5.37 86.73 0.47 9.63 16 11 N -0.62 -33.51 3.39 -691.99 -2.35 -35.86 16 12 C -0.24 -14.47 10.28 84.03 0.86 -13.61 16 13 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 14 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 15 N -0.95 -57.25 10.31 21.65 0.22 -57.03 16 16 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 17 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 20 C 0.13 5.95 6.10 86.86 0.53 6.48 16 21 C -0.14 -2.59 6.00 -11.54 -0.07 -2.66 16 22 C -0.16 -2.32 9.77 30.62 0.30 -2.02 16 23 C -0.17 -2.72 10.10 30.62 0.31 -2.41 16 24 H 0.08 2.06 8.05 -2.39 -0.02 2.04 16 25 H 0.07 1.60 6.31 -2.39 -0.02 1.58 16 26 H 0.06 2.07 6.12 -2.39 -0.01 2.06 16 27 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 28 H 0.41 11.90 8.47 -92.71 -0.79 11.12 16 29 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.87 6.53 -2.39 -0.02 1.85 16 32 H 0.10 2.77 8.05 -2.39 -0.02 2.75 16 33 H 0.09 2.86 8.01 -2.39 -0.02 2.84 16 34 H 0.01 0.40 7.52 -2.39 -0.02 0.38 16 35 H 0.02 0.91 7.37 -2.39 -0.02 0.89 16 36 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.03 1.62 6.31 -2.38 -0.02 1.60 16 38 H 0.02 0.96 8.04 -2.39 -0.02 0.94 16 39 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.10 1.48 6.42 -2.39 -0.02 1.46 16 41 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -71.52 338.94 2.87 -68.65 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.21 Total: 22.32 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 4.97 Total: 0.74 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -4.30 Total: -118.44 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.04 Total: -22.57 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -71.52 2.87 -68.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716834345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.593 kcal (2) G-P(sol) polarization free energy of solvation -71.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds